CX675409

Overview
NameCX675409
Unique NameCX675409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YM13B_YEAST (Transposon Ty1-MR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-MR1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1 
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901
[Close]
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YM12B_YEAST (Transposon Ty1-ML2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-ML2 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1 
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901
[Close]
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YM11B_YEAST (Transposon Ty1-ML1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-ML1 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1 
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901
[Close]
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YL11B_YEAST (Transposon Ty1-LR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-LR1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1 
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901
[Close]
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YJ12B_YEAST (Transposon Ty1-JR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-JR2 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1 
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901
[Close]
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YJ11B_YEAST (Transposon Ty1-JR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-JR1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1 
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901
[Close]
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YH11B_YEAST (Transposon Ty1-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-H PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1 
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  706 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 939
[Close]
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YG13B_YEAST (Transposon Ty1-GR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-GR3 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1 
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901
[Close]
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YG11B_YEAST (Transposon Ty1-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-GR1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1 
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901
[Close]
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YE12B_YEAST (Transposon Ty1-ER2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-ER2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1 
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901
The following BLAST results are available for this feature:
BLAST of CX675409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
YM13B_YEAST5.260e-1125.82Transposon Ty1-MR1 Gag-Pol polyprotein OS=Saccharo... [more]
YM12B_YEAST5.260e-1125.82Transposon Ty1-ML2 Gag-Pol polyprotein OS=Saccharo... [more]
YM11B_YEAST5.260e-1125.82Transposon Ty1-ML1 Gag-Pol polyprotein OS=Saccharo... [more]
YL11B_YEAST5.260e-1125.82Transposon Ty1-LR1 Gag-Pol polyprotein OS=Saccharo... [more]
YJ12B_YEAST5.260e-1125.82Transposon Ty1-JR2 Gag-Pol polyprotein OS=Saccharo... [more]
YJ11B_YEAST5.260e-1125.82Transposon Ty1-JR1 Gag-Pol polyprotein OS=Saccharo... [more]
YH11B_YEAST5.260e-1125.82Transposon Ty1-H Gag-Pol polyprotein OS=Saccharomy... [more]
YG13B_YEAST5.260e-1125.82Transposon Ty1-GR3 Gag-Pol polyprotein OS=Saccharo... [more]
YG11B_YEAST5.260e-1125.82Transposon Ty1-GR1 Gag-Pol polyprotein OS=Saccharo... [more]
YE12B_YEAST5.260e-1125.82Transposon Ty1-ER2 Gag-Pol polyprotein OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A11-B22-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675409 ID=CX675409; Name=CX675409; organism=Citrus sinensis; type=EST; length=726bp
CTCATTCATACTGATGTGTGCGGTCCATTCAAGCTAAACTCCCTTGGTAA
AAATAATTATTTCCTTCTCTTCATAGATGATTTTTTAAGAAAAACTTGGG
TGTATTTTTTAAAGCAGAAATCAGAAGTCTTTGAAGCTTTCAAGAAGTTT
AAAGCTGCAATGGAAAAAGAAAGTGGATACCCAATTAAAGCCACAAGATC
TAATCGAGGTGGAGAGTTCACTTCCAAAGAATTTTTAGAGTTTTGTGAAG
CAAATGGAATTCGACGCCCTTTGACAGTTCTAAGATCCCCTCAGCAAAAT
GGTGTTGTAGAAAGGAAGAACAGAACCATCCGCAACATGGCAAGAAGCAT
GCTCAAGAGTAAGAGGCTACCTAAAGAATTTTGGGCTGAAGCTGTTGCAT
GTGCAGTCTACTTATCCTATCGATCTCCATCAAGAAGCGTGTGAGGCAAG
ATGCCACAAGAAGCTTGGAGTGGAAGAAAACTCGGCATCACCCATCTTAG
AGTTTTCGGAAGCATTGCCCATGTACATGTACCGGACGAGAGTAGAAGCA
AACTGGATGATAAAAGTGAGAAGTTCATCTTCATCGGCTATGACAACAAC
TCCAAAGGATACAAACTTTACAATTCAGACAACAGGAGGATCGTGATCAG
TCGAGATGTAGTTTTTAATGAAGAAGGAGAATGGGATTTTGGCTCTGGTA
TGGATGACTTCTACTTCTTTCCCATT
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