CX675409

Overview
NameCX675409
Unique NameCX675409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YE11B_YEAST (Transposon Ty1-ER1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-ER1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1 
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901
[Close]
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YB11B_YEAST (Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-BL PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1 
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901
[Close]
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YP14B_YEAST (Transposon Ty1-PR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-PR3 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 63/244 (25.82%), Postives = 102/244 (41.80%), Query Frame = 1 
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K   +      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSASQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901
[Close]
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YP11B_YEAST (Transposon Ty1-PL Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-PL PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1 
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPNSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901
[Close]
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YL14B_YEAST (Transposon Ty1-LR4 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-LR4 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1 
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPNSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901
[Close]
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YL13B_YEAST (Transposon Ty1-LR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-LR3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 63/244 (25.82%), Postives = 102/244 (41.80%), Query Frame = 1 
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K   +      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSASQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901
[Close]
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YL12B_YEAST (Transposon Ty1-LR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-LR2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1 
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPNSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901
[Close]
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YG12B_YEAST (Transposon Ty1-GR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-GR2 PE=3 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1 
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPNSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901
[Close]
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YD14B_YEAST (Transposon Ty1-DR5 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-DR5 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1 
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPNSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901
[Close]
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YD13B_YEAST (Transposon Ty1-DR4 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-DR4 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1 
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPNSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901
The following BLAST results are available for this feature:
BLAST of CX675409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
YE11B_YEAST5.260e-1125.82Transposon Ty1-ER1 Gag-Pol polyprotein OS=Saccharo... [more]
YB11B_YEAST5.260e-1125.82Transposon Ty1-BL Gag-Pol polyprotein OS=Saccharom... [more]
YP14B_YEAST6.869e-1125.82Transposon Ty1-PR3 Gag-Pol polyprotein OS=Saccharo... [more]
YP11B_YEAST6.869e-1125.82Transposon Ty1-PL Gag-Pol polyprotein OS=Saccharom... [more]
YL14B_YEAST6.869e-1125.82Transposon Ty1-LR4 Gag-Pol polyprotein OS=Saccharo... [more]
YL13B_YEAST6.869e-1125.82Transposon Ty1-LR3 Gag-Pol polyprotein OS=Saccharo... [more]
YL12B_YEAST6.869e-1125.82Transposon Ty1-LR2 Gag-Pol polyprotein OS=Saccharo... [more]
YG12B_YEAST6.869e-1125.82Transposon Ty1-GR2 Gag-Pol polyprotein OS=Saccharo... [more]
YD14B_YEAST6.869e-1125.82Transposon Ty1-DR5 Gag-Pol polyprotein OS=Saccharo... [more]
YD13B_YEAST6.869e-1125.82Transposon Ty1-DR4 Gag-Pol polyprotein OS=Saccharo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_62A11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A11-B22-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675409 ID=CX675409; Name=CX675409; organism=Citrus sinensis; type=EST; length=726bp
CTCATTCATACTGATGTGTGCGGTCCATTCAAGCTAAACTCCCTTGGTAA
AAATAATTATTTCCTTCTCTTCATAGATGATTTTTTAAGAAAAACTTGGG
TGTATTTTTTAAAGCAGAAATCAGAAGTCTTTGAAGCTTTCAAGAAGTTT
AAAGCTGCAATGGAAAAAGAAAGTGGATACCCAATTAAAGCCACAAGATC
TAATCGAGGTGGAGAGTTCACTTCCAAAGAATTTTTAGAGTTTTGTGAAG
CAAATGGAATTCGACGCCCTTTGACAGTTCTAAGATCCCCTCAGCAAAAT
GGTGTTGTAGAAAGGAAGAACAGAACCATCCGCAACATGGCAAGAAGCAT
GCTCAAGAGTAAGAGGCTACCTAAAGAATTTTGGGCTGAAGCTGTTGCAT
GTGCAGTCTACTTATCCTATCGATCTCCATCAAGAAGCGTGTGAGGCAAG
ATGCCACAAGAAGCTTGGAGTGGAAGAAAACTCGGCATCACCCATCTTAG
AGTTTTCGGAAGCATTGCCCATGTACATGTACCGGACGAGAGTAGAAGCA
AACTGGATGATAAAAGTGAGAAGTTCATCTTCATCGGCTATGACAACAAC
TCCAAAGGATACAAACTTTACAATTCAGACAACAGGAGGATCGTGATCAG
TCGAGATGTAGTTTTTAATGAAGAAGGAGAATGGGATTTTGGCTCTGGTA
TGGATGACTTCTACTTCTTTCCCATT
back to top