CX675409

Overview
NameCX675409
Unique NameCX675409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YD11B_YEAST (Transposon Ty1-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-DR1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPNSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901          
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: TY1AB_YEAST (Transposon TyH3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPNSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901          
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YB12B_YEAST (Transposon Ty1-BR Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-BR PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 59/226 (26.11%), Postives = 96/226 (42.48%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVV 663
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYV 887          
The following BLAST results are available for this feature:
BLAST of CX675409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
YD11B_YEAST6.869e-1125.82Transposon Ty1-DR1 Gag-Pol polyprotein OS=Saccharo... [more]
TY1AB_YEAST6.869e-1125.82Transposon TyH3 Gag-Pol polyprotein OS=Saccharomyc... [more]
YB12B_YEAST8.972e-1126.11Transposon Ty1-BR Gag-Pol polyprotein OS=Saccharom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A11-B22-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675409 ID=CX675409; Name=CX675409; organism=Citrus sinensis; type=EST; length=726bp
CTCATTCATACTGATGTGTGCGGTCCATTCAAGCTAAACTCCCTTGGTAA
AAATAATTATTTCCTTCTCTTCATAGATGATTTTTTAAGAAAAACTTGGG
TGTATTTTTTAAAGCAGAAATCAGAAGTCTTTGAAGCTTTCAAGAAGTTT
AAAGCTGCAATGGAAAAAGAAAGTGGATACCCAATTAAAGCCACAAGATC
TAATCGAGGTGGAGAGTTCACTTCCAAAGAATTTTTAGAGTTTTGTGAAG
CAAATGGAATTCGACGCCCTTTGACAGTTCTAAGATCCCCTCAGCAAAAT
GGTGTTGTAGAAAGGAAGAACAGAACCATCCGCAACATGGCAAGAAGCAT
GCTCAAGAGTAAGAGGCTACCTAAAGAATTTTGGGCTGAAGCTGTTGCAT
GTGCAGTCTACTTATCCTATCGATCTCCATCAAGAAGCGTGTGAGGCAAG
ATGCCACAAGAAGCTTGGAGTGGAAGAAAACTCGGCATCACCCATCTTAG
AGTTTTCGGAAGCATTGCCCATGTACATGTACCGGACGAGAGTAGAAGCA
AACTGGATGATAAAAGTGAGAAGTTCATCTTCATCGGCTATGACAACAAC
TCCAAAGGATACAAACTTTACAATTCAGACAACAGGAGGATCGTGATCAG
TCGAGATGTAGTTTTTAATGAAGAAGGAGAATGGGATTTTGGCTCTGGTA
TGGATGACTTCTACTTCTTTCCCATT
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