CK937979

Overview
NameCK937979
Unique NameCK937979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RL40_CAEEL (60S ribosomal protein L40 OS=Caenorhabditis elegans GN=ubq-2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 2
Query:  170 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 325
            IIEPSL  LA+KYN DK ICRKCYARL PRA NCRKKKCGHS++LR KKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKQICRKCYARLPPRASNCRKKKCGHSSELRIKKKLK 52          
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RL40_TOBAC (60S ribosomal protein L40 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.563e-15
Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  170 IIEPSLMALARKYNQDKMICRKCY--------------------ARLHPRAVNCRKKKCGHSNQLRPKKKIK 325
            IIEPSL ALA K+N DKMICRKCY                    ARL PRA NCRK+KCGH+N +RPKKK+K
Sbjct:    1 IIEPSLKALASKFNCDKMICRKCYVRCPRRTPQRTCRVLTWIPQARLPPRATNCRKRKCGHTNHVRPKKKLK 72          
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RL40_TETPY (60S ribosomal protein L40 OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.462e-14
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  173 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 325
            +EP++ ALA+KYN +K +CR CYARL P+A NCRK+KCGHSN LR KKK K
Sbjct:    2 MEPTIAALAKKYNCEKKVCRDCYARLPPKATNCRKRKCGHSNSLRLKKKPK 52          
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.257e-14
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 2
Query:    5 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169
            TID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   22 TIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.254e-14
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 2
Query:    5 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169
            TID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   22 TIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.254e-14
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 2
Query:    5 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169
            TID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   22 TIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.254e-14
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 2
Query:    5 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169
            TID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:   22 TIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RL40_LEITA (60S ribosomal protein L40 OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.556e-14
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 2
Query:  170 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 325
            ++EP+L+ALA+KYN +K +CR+CYARL  RA NCRKK CGH + LR KKK++
Sbjct:    1 VMEPTLVALAKKYNWEKKVCRRCYARLPVRATNCRKKACGHCSNLRMKKKLR 52          
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RL40_LEIMA (60S ribosomal protein L40 OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.556e-14
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 2
Query:  170 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 325
            ++EP+L+ALA+KYN +K +CR+CYARL  RA NCRKK CGH + LR KKK++
Sbjct:    1 VMEPTLVALAKKYNWEKKVCRRCYARLPVRATNCRKKACGHCSNLRMKKKLR 52          
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.476e-14
Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 2
Query:    8 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169
            +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG
Sbjct:   23 VDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of CK937979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
RL40_CAEEL2.410e-1778.8560S ribosomal protein L40 OS=Caenorhabditis elegan... [more]
RL40_TOBAC6.563e-1556.9460S ribosomal protein L40 OS=Nicotiana tabacum PE=... [more]
RL40_TETPY1.462e-1466.6760S ribosomal protein L40 OS=Tetrahymena pyriformi... [more]
RUB1_DESAN3.257e-1467.27NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB2_ORYSJ4.254e-1465.45NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ4.254e-1465.45NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH4.254e-1465.45NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
RL40_LEITA5.556e-1461.5460S ribosomal protein L40 OS=Leishmania tarentolae... [more]
RL40_LEIMA5.556e-1461.5460S ribosomal protein L40 OS=Leishmania major GN=U... [more]
NEDD8_DROME9.476e-1461.11NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004479_E05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937979 ID=CK937979; Name=CK937979; organism=Citrus sinensis; type=EST; length=577bp
GGGCACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTC
CGCCGGACCAGCAGAGACTTATCTTCGCTGGGAAGCAACTTGAGGATGGC
CGTACTCTAGCCGATTACAATATCCAAAAGGAGTCAACTCTGCATCTGGT
TCTGAGGCTTCGTGGTGGTATTATTGAGCCTTCTTTGATGGCATTGGCAA
GGAAGTATAACCAGGACAAGATGATCTGCCGAAAATGTTATGCACGCCTG
CACCCCCGTGCTGTGAACTGCAGGAAGAAGAAATGTGGGCACAGCAACCA
GCTGAGGCCAAAGAAGAAGATCAAGTAGATATTCTGCAGAGAAATGCTAC
ATTTTATACTGAAACAGGATGTTTTGCCTAGAATATGTAGCATCAACTAT
TGCCTAGTAATAGTTGTCACTTAGTACGTGATTTCTGTTTCAAGATGTTT
CCAGGGTTGAGAGTATTTGTAGACTGATTACTATCGCCTCTATGTGCCGT
GACATTGGGCACTTTATTATAACTTGCCTGAATCTACTATTTTCTTCCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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