CK937979
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RL40_CAEEL (60S ribosomal protein L40 OS=Caenorhabditis elegans GN=ubq-2 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17 Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 2 Query: 170 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 325 IIEPSL LA+KYN DK ICRKCYARL PRA NCRKKKCGHS++LR KKK+K Sbjct: 1 IIEPSLRQLAQKYNCDKQICRKCYARLPPRASNCRKKKCGHSSELRIKKKLK 52
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RL40_TOBAC (60S ribosomal protein L40 OS=Nicotiana tabacum PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 6.563e-15 Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 2 Query: 170 IIEPSLMALARKYNQDKMICRKCY--------------------ARLHPRAVNCRKKKCGHSNQLRPKKKIK 325 IIEPSL ALA K+N DKMICRKCY ARL PRA NCRK+KCGH+N +RPKKK+K Sbjct: 1 IIEPSLKALASKFNCDKMICRKCYVRCPRRTPQRTCRVLTWIPQARLPPRATNCRKRKCGHTNHVRPKKKLK 72
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RL40_TETPY (60S ribosomal protein L40 OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.462e-14 Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 2 Query: 173 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 325 +EP++ ALA+KYN +K +CR CYARL P+A NCRK+KCGHSN LR KKK K Sbjct: 2 MEPTIAALAKKYNCEKKVCRDCYARLPPKATNCRKRKCGHSNSLRLKKKPK 52
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.257e-14 Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 2 Query: 5 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169 TID VK ++++KEGIPP QQRLI+AGKQL D +T DYNI+ S LHLVL LRGG Sbjct: 22 TIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 4.254e-14 Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 2 Query: 5 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169 TID +K ++++KEGIPP QQRLI+AGKQL D +T DYNI+ S LHLVL LRGG Sbjct: 22 TIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 4.254e-14 Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 2 Query: 5 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169 TID +K ++++KEGIPP QQRLI+AGKQL D +T DYNI+ S LHLVL LRGG Sbjct: 22 TIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 4.254e-14 Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 2 Query: 5 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169 TID +K ++++KEGIPP QQRLI+AGKQL D +T DYNI+ S LHLVL LRGG Sbjct: 22 TIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RL40_LEITA (60S ribosomal protein L40 OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 5.556e-14 Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 2 Query: 170 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 325 ++EP+L+ALA+KYN +K +CR+CYARL RA NCRKK CGH + LR KKK++ Sbjct: 1 VMEPTLVALAKKYNWEKKVCRRCYARLPVRATNCRKKACGHCSNLRMKKKLR 52
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RL40_LEIMA (60S ribosomal protein L40 OS=Leishmania major GN=UB-EP52 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 5.556e-14 Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 2 Query: 170 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 325 ++EP+L+ALA+KYN +K +CR+CYARL RA NCRKK CGH + LR KKK++ Sbjct: 1 VMEPTLVALAKKYNWEKKVCRRCYARLPVRATNCRKKACGHCSNLRMKKKLR 52
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 9.476e-14 Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 2 Query: 8 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169 +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q S LHLVL LRGG Sbjct: 23 VDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGG 76 The following BLAST results are available for this feature:
BLAST of CK937979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 123
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937979 ID=CK937979; Name=CK937979; organism=Citrus sinensis; type=EST; length=577bpback to top |