CK937979

Overview
NameCK937979
Unique NameCK937979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.319e-23
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    5 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169
            TI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   22 TIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.319e-23
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    5 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169
            TI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   22 TIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.319e-23
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    5 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169
            TI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   22 TIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.319e-23
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    5 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169
            TI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   22 TIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.723e-23
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    5 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169
            TI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct:   22 TIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.723e-23
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 2 
Query:    5 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169
            TIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   22 TIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.723e-23
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    5 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169
            T++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   22 TVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.250e-23
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    5 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169
            TI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:   22 TIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRMRGG 76
[Close]
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.250e-23
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 2 
Query:    5 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169
            TI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   22 TIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.838e-23
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    5 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169
            +I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   22 SIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CK937979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
UBIQ_CANFA1.319e-2396.36Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR1.319e-2396.36Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_CAEEL1.319e-2396.36Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_BOVIN1.319e-2396.36Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_TRYBB1.723e-2396.36Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_NEUCR1.723e-2396.36Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBIQ_ACECL1.723e-2394.55Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_SHEEP2.250e-2394.55Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2[more]
UBIQ_ACACA2.250e-2396.36Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_STRPU3.838e-2394.55Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004479_E05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937979 ID=CK937979; Name=CK937979; organism=Citrus sinensis; type=EST; length=577bp
GGGCACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTC
CGCCGGACCAGCAGAGACTTATCTTCGCTGGGAAGCAACTTGAGGATGGC
CGTACTCTAGCCGATTACAATATCCAAAAGGAGTCAACTCTGCATCTGGT
TCTGAGGCTTCGTGGTGGTATTATTGAGCCTTCTTTGATGGCATTGGCAA
GGAAGTATAACCAGGACAAGATGATCTGCCGAAAATGTTATGCACGCCTG
CACCCCCGTGCTGTGAACTGCAGGAAGAAGAAATGTGGGCACAGCAACCA
GCTGAGGCCAAAGAAGAAGATCAAGTAGATATTCTGCAGAGAAATGCTAC
ATTTTATACTGAAACAGGATGTTTTGCCTAGAATATGTAGCATCAACTAT
TGCCTAGTAATAGTTGTCACTTAGTACGTGATTTCTGTTTCAAGATGTTT
CCAGGGTTGAGAGTATTTGTAGACTGATTACTATCGCCTCTATGTGCCGT
GACATTGGGCACTTTATTATAACTTGCCTGAATCTACTATTTTCTTCCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top