CK937979

Overview
NameCK937979
Unique NameCK937979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RL40_ACACA (60S ribosomal protein L40 OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.365e-20
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  170 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 325
            +IEPSL  LARKYN DK++CRKCYARLHPRAVNCRKKKCGHSN  RPKKK+K
Sbjct:    1 VIEPSLQVLARKYNCDKVVCRKCYARLHPRAVNCRKKKCGHSNHWRPKKKLK 52          
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RL40_DROME (60S ribosomal protein L40 OS=Drosophila melanogaster GN=RpL40 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.783e-20
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  170 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 325
            IIEPSL  LA+KYN DKMICRKCYARLHPRA NCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNNLRPKKKLK 52          
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RL40_DICDI (60S ribosomal protein L40 OS=Dictyostelium discoideum GN=ubqB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.041e-20
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 2
Query:  173 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKI 322
            IEPSL+ LARKY  DKMICRKCYARLHPRAVNCRKKKCGHSN LRPKKK+
Sbjct:    1 IEPSLVILARKYKCDKMICRKCYARLHPRAVNCRKKKCGHSNNLRPKKKL 50          
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RL40_NEUCR (60S ribosomal protein L40 OS=Neurospora crassa GN=ubi-1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.971e-19
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  170 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 325
            IIEPSL ALA K+N DKMICRKCYARL PRA NCRK+KCGH+NQLRPKKK+K
Sbjct:    1 IIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 52          
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RL40_SCHPO (60S ribosomal protein L40 OS=Schizosaccharomyces pombe GN=ubi1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.363e-19
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 2
Query:  170 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 325
            IIEPSL ALA KYN +K ICRKCYARL PRA NCRKKKCGH+NQLRPKKK+K
Sbjct:    1 IIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQLRPKKKLK 52          
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RL40_YEAST (60S ribosomal protein L40 OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.392e-19
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 2
Query:  170 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 325
            IIEPSL ALA KYN DK +CRKCYARL PRA NCRK+KCGH+NQLRPKKK+K
Sbjct:    1 IIEPSLKALASKYNCDKSVCRKCYARLPPRATNCRKRKCGHTNQLRPKKKLK 52          
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.278e-18
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 2
Query:    5 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169
            T+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:   22 TVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.669e-18
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 2
Query:    5 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 169
            T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   22 TVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RL40_CRYNE (60S ribosomal protein L40 OS=Cryptococcus neoformans GN=UBI1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.082e-17
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 2
Query:  170 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 325
            IIEPSL ALA KYN +K ICRKCYARL PRA NCRK+KCGHS+Q+RPKK +K
Sbjct:    1 IIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKRKCGHSSQIRPKKALK 52          
BLAST of CK937979 vs. ExPASy Swiss-Prot
Match: RL40_EIMBO (60S ribosomal protein L40 OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  170 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 325
            IIEPSL  LA KYN +K ICRKCYARL PRA NCRKKKCGH++QLRPKKK K
Sbjct:    1 IIEPSLALLASKYNCEKKICRKCYARLPPRATNCRKKKCGHTSQLRPKKKPK 52          
The following BLAST results are available for this feature:
BLAST of CK937979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
RL40_ACACA1.365e-2082.6960S ribosomal protein L40 OS=Acanthamoeba castella... [more]
RL40_DROME1.783e-2084.6260S ribosomal protein L40 OS=Drosophila melanogast... [more]
RL40_DICDI3.041e-2088.0060S ribosomal protein L40 OS=Dictyostelium discoid... [more]
RL40_NEUCR1.971e-1982.6960S ribosomal protein L40 OS=Neurospora crassa GN=... [more]
RL40_SCHPO3.363e-1982.6960S ribosomal protein L40 OS=Schizosaccharomyces p... [more]
RL40_YEAST4.392e-1980.7760S ribosomal protein L40 OS=Saccharomyces cerevis... [more]
UBIL_NPVOP1.278e-1880.00Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC1.669e-1878.18Ubiquitin-like protein OS=Autographa californica n... [more]
RL40_CRYNE1.082e-1776.9260S ribosomal protein L40 OS=Cryptococcus neoforma... [more]
RL40_EIMBO2.410e-1778.8560S ribosomal protein L40 OS=Eimeria bovis PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004479_E05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937979 ID=CK937979; Name=CK937979; organism=Citrus sinensis; type=EST; length=577bp
GGGCACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTC
CGCCGGACCAGCAGAGACTTATCTTCGCTGGGAAGCAACTTGAGGATGGC
CGTACTCTAGCCGATTACAATATCCAAAAGGAGTCAACTCTGCATCTGGT
TCTGAGGCTTCGTGGTGGTATTATTGAGCCTTCTTTGATGGCATTGGCAA
GGAAGTATAACCAGGACAAGATGATCTGCCGAAAATGTTATGCACGCCTG
CACCCCCGTGCTGTGAACTGCAGGAAGAAGAAATGTGGGCACAGCAACCA
GCTGAGGCCAAAGAAGAAGATCAAGTAGATATTCTGCAGAGAAATGCTAC
ATTTTATACTGAAACAGGATGTTTTGCCTAGAATATGTAGCATCAACTAT
TGCCTAGTAATAGTTGTCACTTAGTACGTGATTTCTGTTTCAAGATGTTT
CCAGGGTTGAGAGTATTTGTAGACTGATTACTATCGCCTCTATGTGCCGT
GACATTGGGCACTTTATTATAACTTGCCTGAATCTACTATTTTCTTCCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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