CX675407 | Citrus Genome Database

Overview


Name	CX675407
Unique Name	CX675407
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	737

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CX675407_ssr198	microsatellite	CX675407_ssr198:198..209.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

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BLAST of CX675407 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.014e-19
Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = -1

Query:  405 QLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIP 713
            +L+G +  E+G L  L +L LYSN + G IP +L N TNLV L LY NSFSG IP+ +G L  L  ++L  N L G+IP+S+ N+T L+ L L +N LSG +P
Sbjct:   80 ELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPMSLTNITTLQVLDLSNNRLSGSVP 182

HSP 2 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 50/159 (31.45%), Postives = 73/159 (45.91%), Query Frame = -1

Query:  261 TILHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEIEXXXXXXXXXXXXXNFRGQVLKSFRNLTDLVKLRLNQNYLTGNIP 737
            T  H++ N  N  I  ++G      HL+             L    NL +L LY+N+ +G IP  +GNL +L  + L +N  +G IP S+G L+ LRFL L +N L+G IP                         S  N+T L  L L+ N L+G++P
Sbjct:   59 TWFHVTCNNENSVIRVDLGNAELSGHLV-----------PELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPM------------------------SLTNITTLQVLDLSNNRLSGSVP 182

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BLAST of CX675407 vs. ExPASy Swiss-Prot
Match: Y5694_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.853e-18
Identity = 43/158 (27.22%), Postives = 74/158 (46.84%), Query Frame = -1

Query:  261 LHISRNQLNGSIPHEVG-QLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEIEXXXXXXXXXXXXXNFRGQVLKSFRNLTDLVKLRLNQNYLTGNIP 731
            L +S N L+G IP  +G  L  L  L +  N L GS P  + +   L+ L L++N F GS+P  IG   SL  +++  N  +G  P+ +  L  ++ +   +N  +G +P+ +              +F G++      +  L K   +QN  +G +P
Sbjct:  249 LDLSLNNLSGEIPRSLGPSLKNLVSLDVSQNKLSGSFPSGICSGKRLINLSLHSNFFEGSLPNSIGECLSLERLQVQNNGFSGEFPVVLWKLPRIKIIRADNNRFTGQVPESVSLASALEQVEIVNNSFSGEIPHGLGLVKSLYKFSASQNRFSGELP 406

HSP 2 Score: 41.2022 bits (95), Expect = 2.853e-18
Identity = 23/59 (38.98%), Postives = 35/59 (59.32%), Query Frame = -3

Query:    7 TGNIPFEIGESPQLQYLDLSSNYIVGEIPTQLGNIIYLNRLSLSGNKLSGRIPGELGSL 183
            +G +P    +SP L  +++S N ++G+IP +L N   L  LSL+GN  +G IP  L  L
Sbjct:  402 SGELPPNFCDSPVLSIVNISHNRLLGKIP-ELKNCKKLVSLSLAGNAFTGEIPPSLADL 459

HSP 3 Score: 69.707 bits (169), Expect = 2.006e-15
Identity = 53/159 (33.33%), Postives = 76/159 (47.80%), Query Frame = -1

Query:  261 ILHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGS-IPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEIEXXXXXXXXXXXXXNFRGQVLKSFRNLTDLVKLRLNQNYLTGNIP 734
            ++  S N + G IP ++G L  L  L L SN L G +P ++   + LV L L  NS+  S IP  +G L  L  + L  +  +G IP S   LT+LR L L  N LSG IP+ +                         +L +LV L ++QN L+G+ P
Sbjct:  151 VIDFSSNHVEGMIPEDLGLLFNLQVLNLGSNLLTGIVPPAIGKLSELVVLDLSENSYLVSEIPSFLGKLDKLEQLLLHRSGFHGEIPTSFVGLTSLRTLDLSLNNLSGEIPRSLGP-----------------------SLKNLVSLDVSQNKLSGSFP 286

HSP 4 Score: 33.4982 bits (75), Expect = 2.006e-15
Identity = 15/52 (28.85%), Postives = 27/52 (51.92%), Query Frame = -3

Query:   25 GNIPFEIGESPQLQYLDLSSNYIVGEIPTQLGNIIYLNRLSLSGNKLSGRIP 180
            G++P  IGE   L+ L + +N   GE P  L  +  +  +    N+ +G++P
Sbjct:  307 GSLPNSIGECLSLERLQVQNNGFSGEFPVVLWKLPRIKIIRADNNRFTGQVP 358

HSP 5 Score: 75.485 bits (184), Expect = 3.372e-13
Identity = 54/161 (33.54%), Postives = 78/161 (48.45%), Query Frame = -1

Query:  258 TILHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNE-LSGIIPQEIEXXXXXXXXXXXXXNFRGQVLKSFRNLTDLVKLRLNQNYLTGNIPK 737
            T L +S N  N  IP ++ +   L  L L SN + G+IP  +S F++L  +   +N   G IP+ +G L +L  + L  N L G +P +IG L+ L  L L  N  L   IP  +               F G++  SF  LT L  L L+ N L+G IP+
Sbjct:  102 THLDLSLNFFNQPIPLQLSRCVTLETLNLSSNLIWGTIPDQISEFSSLKVIDFSSNHVEGMIPEDLGLLFNLQVLNLGSNLLTGIVPPAIGKLSELVVLDLSENSYLVSEIPSFLGKLDKLEQLLLHRSGFHGEIPTSFVGLTSLRTLDLSLNNLSGEIPR 262

HSP 6 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 45/158 (28.48%), Postives = 76/158 (48.10%), Query Frame = -1

Query:  258 LHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEIEXXXXXXXXXXXXXNFRGQVLKSFRNLTDLVKLRLNQNYLTGNIPK 731
            L +S+N+L+GS P  +     L +L L+SNF  GS+P S+    +L  L + NN FSG  P  +  L  +  ++   N+  G +P S+   + L  + + +N  SG IP  +               F G++  +F +   L  + ++ N L G IP+
Sbjct:  274 LDVSQNKLSGSFPSGICSGKRLINLSLHSNFFEGSLPNSIGECLSLERLQVQNNGFSGEFPVVLWKLPRIKIIRADNNRFTGQVPESVSLASALEQVEIVNNSFSGEIPHGLGLVKSLYKFSASQNRFSGELPPNFCDSPVLSIVNISHNRLLGKIPE 431

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BLAST of CX675407 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.947e-17
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = -1

Query:  399 LHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQE 731
            L ++ ++L G +P E+G+L+ L  L+L++N L  SIP SL N T L  +YL NN  +G+IP +IGNL  L ++ L  N LNGAIP S+G L  L    + +N L G IP +
Sbjct:   78 LSLTYHKLRGPLPPELGKLDQLRLLMLHNNALYQSIPASLGNCTALEGIYLQNNYITGTIPSEIGNLSGLKNLDLSNNNLNGAIPASLGQLKRLTKFNVSNNFLVGKIPSD 188

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BLAST of CX675407 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = -1

Query:  405 LNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIP 710
            L+G +  ++GQL  L +L LYSN + G +P  L N TNLV L LY NSF+G IP  +G L  L  ++L  N L G IP+S+ N+  L+ L L +N LSG +P
Sbjct:   84 LSGQLVPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKLRFLRLNNNSLTGPIPMSLTNIMTLQVLDLSNNRLSGSVP 185

HSP 2 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 48/159 (30.19%), Postives = 71/159 (44.65%), Query Frame = -1

Query:  261 TILHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEIEXXXXXXXXXXXXXNFRGQVLKSFRNLTDLVKLRLNQNYLTGNIP 737
            T  H++ N  N  I  ++G  +           L G +   L    NL +L LY+N+ +G +P  +GNL +L  + L +N   G IP S+G L  LRFL L +N L+G IP                         S  N+  L  L L+ N L+G++P
Sbjct:   62 TWFHVTCNNENSVIRVDLGNAD-----------LSGQLVPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKLRFLRLNNNSLTGPIPM------------------------SLTNIMTLQVLDLSNNRLSGSVP 185

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BLAST of CX675407 vs. ExPASy Swiss-Prot
Match: Y4294_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.609e-17
Identity = 46/138 (33.33%), Postives = 73/138 (52.90%), Query Frame = -1

Query:  264 LNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEIEXXXXXXXXXXXXXNFRGQVLKSFRNLTDLVKLRLNQNYLTGNI 677
            L  L  L + +N L G +P  L +F +L FL L +N FS S+P++IG   SL ++ L  N  +G IP S+G L +L+ L +  N LSG +P+ +               F G++ + F  ++ L  L L+ N + GN+
Sbjct:   77 LTKLVKLSMSNNSLSGVLPNDLGSFKSLQFLDLSDNLFSSSLPKEIGRSVSLRNLSLSGNNFSGEIPESMGGLISLQSLDMSSNSLSGPLPKSLTRLNDLLYLNLSSNGFTGKMPRGFELISSLEVLDLHGNSIDGNL 214

HSP 2 Score: 31.187 bits (69), Expect = 8.609e-17
Identity = 17/46 (36.96%), Postives = 25/46 (54.35%), Query Frame = -3

Query:   22 GESPQLQYLDLSSNYIVGEIPTQLGNIIYLNRLSLSGNKLSGRIPG 159
            G S  +++L+LS N + G + +       L  L LS N LSG +PG
Sbjct:  244 GVSESIKHLNLSHNQLEGSLTSGFQLFQNLKVLDLSYNMLSGELPG 289

HSP 3 Score: 70.8626 bits (172), Expect = 2.881e-13
Identity = 42/118 (35.59%), Postives = 59/118 (50.00%), Query Frame = -1

Query:  258 SNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEIEXXXXXXXXXXXXXNFRGQVLKSFRNLTDLVKLRLNQNYLTGNIPK 611
            SN T LV L + NNS SG +P  +G+ KSL  + L  N  + ++P  IG   +LR L L  N  SG IP+ +              +  G + KS   L DL+ L L+ N  TG +P+
Sbjct:   75 SNLTKLVKLSMSNNSLSGVLPNDLGSFKSLQFLDLSDNLFSSSLPKEIGRSVSLRNLSLSGNNFSGEIPESMGGLISLQSLDMSSNSLSGPLPKSLTRLNDLLYLNLSSNGFTGKMPR 192

HSP 4 Score: 25.0238 bits (53), Expect = 2.881e-13
Identity = 18/58 (31.03%), Postives = 29/58 (50.00%), Query Frame = -3

Query:   22 TGNIPFEIGESPQLQYLDLSSNYIVGEIPTQLGNIIYLNRLSLSGNKL---SGR-IPG 183
            TG +P        L+ LDL  N I G +  +   +   + + +SGN+L   SG+ +PG
Sbjct:  187 TGKMPRGFELISSLEVLDLHGNSIDGNLDGEFFLLTNASYVDISGNRLVTTSGKLLPG 244

HSP 5 Score: 64.3142 bits (155), Expect = 3.742e-13
Identity = 48/182 (26.37%), Postives = 79/182 (43.41%), Query Frame = -1

Query:  261 LHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTN-------------------------LRFLFLYHNELSGIIPQEIEXXXXXXXXXXXXXNFRGQVLKSFRNLTDLVKLRLNQNYLTGNIP 731
            L +S N  +G IP  +G L  L  L + SN L G +P+SL+   +L++L L +N F+G +P+    + SL  + L  N ++G +      LTN                         ++ L L HN+L G +    +                G+ L  F  + DL  L+L+ N  +G++P
Sbjct:  131 LSLSGNNFSGEIPESMGGLISLQSLDMSSNSLSGPLPKSLTRLNDLLYLNLSSNGFTGKMPRGFELISSLEVLDLHGNSIDGNLDGEFFLLTNASYVDISGNRLVTTSGKLLPGVSESIKHLNLSHNQLEGSLTSGFQLFQNLKVLDLSYNMLSGE-LPGFNYVYDLEVLKLSNNRFSGSLP 311

HSP 6 Score: 31.187 bits (69), Expect = 3.742e-13
Identity = 17/42 (40.48%), Postives = 23/42 (54.76%), Query Frame = -3

Query:   28 SPQLQYLDLSSNYIVGEIPTQLGNIIYLNRLSLSGNKLSGRI 153
            S  L  LDLSSN + GE+P   G  + L+   LS N+  G +
Sbjct:  341 STTLHTLDLSSNSLTGELPLLTGGCVLLD---LSNNQFEGNL 379

HSP 7 Score: 74.3294 bits (181), Expect = 7.511e-13
Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = -1

Query:  393 LHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEIE 731
            L +S N L+G +P+++G    L  L L  N    S+P+ +    +L  L L  N+FSG IP+ +G L SL  + +  N L+G +P S+  L +L +L L  N  +G +P+  E
Sbjct:   83 LSMSNNSLSGVLPNDLGSFKSLQFLDLSDNLFSSSLPKEIGRSVSLRNLSLSGNNFSGEIPESMGGLISLQSLDMSSNSLSGPLPKSLTRLNDLLYLNLSSNGFTGKMPRGFE 195

[Close]

BLAST of CX675407 vs. ExPASy Swiss-Prot
Match: Y5815_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g58150 OS=Arabidopsis thaliana GN=At5g58150 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.901e-16
Identity = 46/165 (27.88%), Postives = 81/165 (49.09%), Query Frame = -1

Query:  264 LHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGN----LTNLRF-LFLYHNELSGIIPQEIEXXXXXXXXXXXXXNFRGQVLKSF----RNLTDLVKLRLNQNYLTGNI 731
            L++S N+++  +P  +G    L+ L L  N + G IP ++SN  NL  L L+NN F   +P ++ + +SL  + L  N+LN ++P+  G+    L +L     L+   L G++ + +E              F G +L+       N + L+ L L+ N   G+I
Sbjct:  118 LNLSSNRISEPLPSNIGNFMSLHTLDLSFNSISGKIPAAISNLVNLTTLKLHNNDFQFGVPPELVHCRSLLSIDLSSNRLNESLPVGFGSAFPLLKSLNLSRNLFQGSLIGVLHENVE------TVDLSENRFDGHILQLIPGHKHNWSSLIHLDLSDNSFVGHI 276

HSP 2 Score: 38.5058 bits (88), Expect = 1.901e-16
Identity = 18/47 (38.30%), Postives = 27/47 (57.45%), Query Frame = -3

Query:   25 EIGESPQLQYLDLSSNYIVGEIPTQLGNIIYLNRLSLSGNKLSGRIP 165
            EIG+   L YL+LS   +   IP ++  + +L  L LS N L+G +P
Sbjct:  303 EIGKLSALHYLNLSRTNLTNIIPREISRLSHLKVLDLSSNNLTGHVP 349

[Close]

BLAST of CX675407 vs. ExPASy Swiss-Prot
Match: Y2165_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.407e-16
Identity = 51/158 (32.28%), Postives = 73/158 (46.20%), Query Frame = -1

Query:  261 ILHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEIEXXXXXXXXXXXXXNFRGQVLKSFRNLTDLVKLRLNQNYLTGNIP 734
            +L +S   +NG +P  +G L  L  L L  N L   +P SL    NL  L L  NSF+G +PQ   +LK+L  + +  N L G IP  +G L+ L  L    N  S  IP E+              +  G V +  R L+ L  + +  N L+G +P
Sbjct:  132 VLDLSSCSVNGVVPFTLGNLTSLRTLNLSQNSLTSLVPSSLGQLLNLSQLDLSRNSFTGVLPQSFSSLKNLLTLDVSSNYLTGPIPPGLGALSKLIHLNFSSNSFSSPIPSELGDLVNLVDFDLSINSLSGSVPQELRKLSKLQLMAIGDNLLSGTLP 289

HSP 2 Score: 23.8682 bits (50), Expect = 5.407e-16
Identity = 16/75 (21.33%), Postives = 32/75 (42.67%), Query Frame = -3

Query:   25 TGNIPFEIGESPQLQYLDLSSNYIVGEIP------TQLGNIIYLNR----------------LSLSGNKLSGRIP 183
            +G++P      P+L+ LD++ N   G +P       Q+  ++ ++                 + LSGN   G++P
Sbjct:  310 SGSLPDVCWSLPKLRILDIAKNNFTGLLPYSSYDSDQIAEMVDISSNTFYGELTPILRRFRIMDLSGNYFEGKLP 384

HSP 3 Score: 58.151 bits (139), Expect = 2.004e-15
Identity = 42/127 (33.07%), Postives = 59/127 (46.46%), Query Frame = -1

Query:  261 LGGSIPRSLS-NFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEIEXXXXXXXXXXXXXNFRGQVLKSFRNLTDLVKLRLNQNYLTGNIP 638
            L G+IP     +   L  L L + S +G +P  +GNL SL  + L  N L   +P S+G L NL  L L  N  +G++PQ                        SF +L +L+ L ++ NYLTG IP
Sbjct:  115 LPGTIPEWFGVSLLALEVLDLSSCSVNGVVPFTLGNLTSLRTLNLSQNSLTSLVPSSLGQLLNLSQLDLSRNSFTGVLPQ------------------------SFSSLKNLLTLDVSSNYLTGPIP 217

HSP 4 Score: 45.0542 bits (105), Expect = 2.004e-15
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = -3

Query:    7 TGNIPFEIGESPQLQYLDLSSNYIVGEIPTQLGNIIYLNRLSLSGNKLSGRIPGELGSL 183
            TG IP  +G   +L +L+ SSN     IP++LG+++ L    LS N LSG +P EL  L
Sbjct:  213 TGPIPPGLGALSKLIHLNFSSNSFSSPIPSELGDLVNLVDFDLSINSLSGSVPQELRKL 271

HSP 5 Score: 77.7962 bits (190), Expect = 6.794e-14
Identity = 41/112 (36.61%), Postives = 63/112 (56.25%), Query Frame = -1

Query:  396 LHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEI 731
            L +SRN   G +P     L  L  L + SN+L G IP  L   + L+ L   +NSFS  IP ++G+L +L D  L IN L+G++P  +  L+ L+ + +  N LSG +P ++
Sbjct:  181 LDLSRNSFTGVLPQSFSSLKNLLTLDVSSNYLTGPIPPGLGALSKLIHLNFSSNSFSSPIPSELGDLVNLVDFDLSINSLSGSVPQELRKLSKLQLMAIGDNLLSGTLPVDL 292

HSP 6 Score: 74.7146 bits (182), Expect = 5.751e-13
Identity = 49/158 (31.01%), Postives = 76/158 (48.10%), Query Frame = -1

Query:  261 LHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEIEXXXXXXXXXXXXXNFRGQV-LKSFRNLTDLVKLRLNQNYLTGNIP 731
            L++S+N L   +P  +GQL  L+ L L  N   G +P+S S+  NL+ L + +N  +G IP  +G L  L  +    N  +  IP  +G+L NL    L  N LSG +PQE+                 G + +  F   + L  L L +N  +G++P
Sbjct:  157 LNLSQNSLTSLVPSSLGQLLNLSQLDLSRNSFTGVLPQSFSSLKNLLTLDVSSNYLTGPIPPGLGALSKLIHLNFSSNSFSSPIPSELGDLVNLVDFDLSINSLSGSVPQELRKLSKLQLMAIGDNLLSGTLPVDLFSAESQLQTLVLRENGFSGSLP 314

[Close]

BLAST of CX675407 vs. ExPASy Swiss-Prot
Match: Y4372_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 5.427e-16
Identity = 39/119 (32.77%), Postives = 58/119 (48.74%), Query Frame = -1

Query:  261 SLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEIEXXXXXXXXXXXXXNFRGQVLKSFRNLTDLVKLRLNQNYLTGNIP 617
            S +N + ++ L L N+   GSIP  +G+L +L  + L  N  NG +P+S  N   LRFL L  N +SG IP  I                 G++  +  +L +L  + L  NY +G IP
Sbjct:   61 SCNNDSKVLTLSLPNSQLLGSIPSDLGSLLTLQSLDLSNNSFNGPLPVSFFNARELRFLDLSSNMISGEIPSAIGDLHNLLTLNLSDNALAGKLPTNLASLRNLTVVSLENNYFSGEIP 179

HSP 2 Score: 39.2762 bits (90), Expect = 5.427e-16
Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = -3

Query:   13 TGNIPFEIGESPQLQYLDLSSNYIVGEIPTQLGNIIYLNRLSLSGNKLSGRIPGELG 183
            +G IP   G    +++LDLSSN I G +P   G    L  L++S N++SG IP E+G
Sbjct:  175 SGEIP---GGWRVVEFLDLSSNLINGSLPPDFGG-YSLQYLNVSFNQISGEIPPEIG 227

[Close]

BLAST of CX675407 vs. ExPASy Swiss-Prot
Match: PGIP1_ARATH (Polygalacturonase inhibitor 1 OS=Arabidopsis thaliana GN=PGIP1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.198e-16
Identity = 56/163 (34.36%), Postives = 78/163 (47.85%), Query Frame = -1

Query:  261 ILHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLK-SLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEIEXXXXXXXXXXXXXNFRGQVLKSFRNLTDLVK----LRLNQNYLTGNIP 734
            +L +S   L G IP  + QL  L  L L  N L GSIP SLS    ++ L L  N  +GSIP+  G+   ++ D++L  NQL+G IP S+GN+ +   + L  N+L G                     F+  + K      D+ K    L LN N +TGNIP
Sbjct:  123 MLRLSWTNLTGPIPDFISQLKNLEFLELSFNDLSGSIPSSLSTLPKILALELSRNKLTGSIPESFGSFPGTVPDLRLSHNQLSGPIPKSLGNI-DFNRIDLSRNKLQGDASMLFGSNKTTWSIDLSRNMFQFDISK-----VDIPKTLGILDLNHNGITGNIP 279

HSP 2 Score: 30.8018 bits (68), Expect = 7.198e-16
Identity = 15/30 (50.00%), Postives = 21/30 (70.00%), Query Frame = -3

Query:   94 TGNIPFEIGESPQLQYLDLSSNYIVGEIPT 183
            TGNIP +  E+P LQ+ ++S N + G IPT
Sbjct:  275 TGNIPVQWTEAP-LQFFNVSYNKLCGHIPT 303

HSP 3 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 54/161 (33.54%), Postives = 78/161 (48.45%), Query Frame = -1

Query:  258 TILHISRNQLNGSIPHEVGQLNFLNHLILYS-NFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEIEXXXXXXXXXXXXXNFRGQVLKSFRNLTDLVKLRLNQNYLTGNIPK 737
            T L I   Q++G IP EVG L +L  L+    + L G+I  +++   NL  L L   + +G IP  I  LK+L  ++L  N L+G+IP S+  L  +  L L  N+L+G IP+                +F G V            LRL+ N L+G IPK
Sbjct:   73 TALTIFSGQISGQIPAEVGDLPYLETLVFRKLSNLTGTIQPTIAKLKNLRMLRLSWTNLTGPIPDFISQLKNLEFLELSFNDLSGSIPSSLSTLPKILALELSRNKLTGSIPESF-------------GSFPGTV----------PDLRLSHNQLSGPIPK 210

[Close]

BLAST of CX675407 vs. ExPASy Swiss-Prot
Match: PSKR2_ARATH (Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.998e-15
Identity = 49/157 (31.21%), Postives = 71/157 (45.22%), Query Frame = -1

Query:  261 LHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEIEXXXXXXXXXXXXXNFRGQVLKSFRNLTDLVKLRLNQNYLTGNIP 731
            LHI  N+L G +P  +  +  L  L L  N+L G + ++LSN + L  L +  N FS  IP   GNL  L  + +  N+ +G  P S+   + LR L L +N LSG I                  +F G +  S  +   +  L L +N   G IP
Sbjct:  213 LHIDSNRLTGQLPDYLYSIRELEQLSLSGNYLSGELSKNLSNLSGLKSLLISENRFSDVIPDVFGNLTQLEHLDVSSNKFSGRFPPSLSQCSKLRVLDLRNNSLSGSINLNFTGFTDLCVLDLASNHFSGPLPDSLGHCPKMKILSLAKNEFRGKIP 369

HSP 2 Score: 25.409 bits (54), Expect = 1.998e-15
Identity = 17/43 (39.53%), Postives = 21/43 (48.84%), Query Frame = -3

Query:   16 LQYLDLSSNYIVGEIPTQLGNIIYLNRLSLSGNKLSGRIPGEL 144
            L  L LS N+I  EIP  +     L  L+L    L G+IP  L
Sbjct:  404 LSTLILSKNFIGEEIPNNVTGFDNLAILALGNCGLRGQIPSWL 446

HSP 3 Score: 57.3806 bits (137), Expect = 1.382e-12
Identity = 55/206 (26.70%), Postives = 79/206 (38.35%), Query Frame = -1

Query:  261 ILHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSI----------------PRSLSN-------FTNLVFLYLYNNSFSGSIPQQ------------------IGNL-------KSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEIEXXXXXXXXXXXXXNFRGQVLKSFRNLTDLVKLRLNQNYLTGNIP 734
            +L +SRNQL G +P E+ +L  L  L L  N L GS+                  SLS        F  LV L + NN F G I  +                  +GNL       KS+  + +  N+L G +P  + ++  L  L L  N LSG + + +               F   +   F NLT L  L ++ N  +G  P
Sbjct:   92 VLDLSRNQLKGEVPAEISKLEQLQVLDLSHNLLSGSVLGVVSGLKLIQSLNISSNSLSGKLSDVGVFPGLVMLNVSNNLFEGEIHPELCSSSGGIQVLDLSMNRLVGNLDGLYNCSKSIQQLHIDSNRLTGQLPDYLYSIRELEQLSLSGNYLSGELSKNLSNLSGLKSLLISENRFSDVIPDVFGNLTQLEHLDVSSNKFSGRFP 297

HSP 4 Score: 36.1946 bits (82), Expect = 1.382e-12
Identity = 20/59 (33.90%), Postives = 31/59 (52.54%), Query Frame = -3

Query:    7 TGNIPFEIGESPQLQYLDLSSNYIVGEIPTQLGNIIYLNRLSLSGNKLSGRIPGELGSL 183
            +G+I         L  LDL+SN+  G +P  LG+   +  LSL+ N+  G+IP    +L
Sbjct:  317 SGSINLNFTGFTDLCVLDLASNHFSGPLPDSLGHCPKMKILSLAKNEFRGKIPDTFKNL 375

HSP 5 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 51/174 (29.31%), Postives = 77/174 (44.25%), Query Frame = -1

Query:  261 ILHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVF---------------LYLYNNSFSGSIP-QQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEIEXXXXXXXXXXXXXNFRGQVLKSFRNLTDLVKLRLNQNYLTGNIP 734
            +L +S N   G+IPH +G++  L ++   +N L G+IP +++   NL+                LY+  N  S  +P  Q+        + L  N+LNG I   IG L  L  L L  N  +G IP  I              +  G +  SF++LT L +  +  N LTG IP
Sbjct:  454 VLDLSWNHFYGTIPHWIGKMESLFYIDFSNNTLTGAIPVAITELKNLIRLNGTASQMTDSSGIPLYVKRNKSSNGLPYNQVSRFP--PSIYLNNNRLNGTILPEIGRLKELHMLDLSRNNFTGTIPDSISGLDNLEVLDLSYNHLYGSIPLSFQSLTFLSRFSVAYNRLTGAIP 625

The following BLAST results are available for this feature:

BLAST of CX675407 vs. ExPASy Swiss-Prot

BLAST of CX675407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88


Match Name	E-value	Identity	Description
SERK1_ARATH	7.014e-19	48.54	Somatic embryogenesis receptor kinase 1 OS=Arabido...	[more]
Y5694_ARATH	2.853e-18	27.22	Probably inactive leucine-rich repeat receptor-lik...	[more]
FEI2_ARATH	2.947e-17	44.14	LRR receptor-like serine/threonine-protein kinase ...	[more]
SERK2_ARATH	3.849e-17	46.08	Somatic embryogenesis receptor kinase 2 OS=Arabido...	[more]
Y4294_ARATH	8.609e-17	33.33	Probable LRR receptor-like serine/threonine-protei...	[more]
Y5815_ARATH	1.901e-16	27.88	Probably inactive leucine-rich repeat receptor-lik...	[more]
Y2165_ARATH	5.407e-16	32.28	Probable LRR receptor-like serine/threonine-protei...	[more]
Y4372_ARATH	5.427e-16	32.77	Probable LRR receptor-like serine/threonine-protei...	[more]
PGIP1_ARATH	7.198e-16	34.36	Polygalacturonase inhibitor 1 OS=Arabidopsis thali...	[more]
PSKR2_ARATH	1.998e-15	31.21	Phytosulfokine receptor 2 OS=Arabidopsis thaliana ...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_62A10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A10-B20-1-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX675407 ID=CX675407; Name=CX675407; organism=Citrus sinensis; type=EST; length=737bp
ATTAATGAGTGACCCAAGCTCTCCAGGTATACGTCCAGAGAGTTTATTCC
CACTCAAACTAAGCCTGTTGAGATAAATTATATTTCCAAGTTGTGTTGGA
ATCTCACCAACAATATAATTTGAAGAAAGATCAAGATATTGTAACTGAGG
TGATTCTCCAATCTCAAACGGTATGTTTCCAGTAATATTATTTATTGAAA
TAAATAAATTGTTATTGCTGAGATCAATGAAAGTGAGGTTTGGATAAGTA
TCAAAAGTTTCGGTATATTTCCTGTTAAATAGTTTTGGTTAAGACGTAGT
TTGACTAGGTCGGTCAAATTTCTGAAGCTTTTGAGAACTTGACCTCGAAA
ATTGTTTTTAGTTAGCAGTAAAGAATTTAACTTCTTGAGATTTTCGATTT
CTTGAGGAATGATACCAGAAAGCTCATTATGATAAAGGAATAAGAATCTC
AAATTGGTTAAATTACCAATTGAAAGAGGTATAGCACCGTTAAGTTGATT
TATGCACAACTTCATATCAGAAAGTGACTTTAAGTTTCCTATTTGTTGAG
GAATGGAACCAGAAAATGAATTATTATAAAGATACAAAAAAACTAAGTTG
GTGAAATTGCTAAGAGAACGAGGGATTGAACCGCCCAAAAAATTAGAATA
TAAGATAAGGTGATTAAGAAAATTCAATTGGCCTACCTCATGTGGAATTG
AACCATTCAATTGATTTCTAGAAATGTGAAGGATCGT