CX675407

Overview
NameCX675407
Unique NameCX675407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675407_ssr198 microsatellite CX675407_ssr198:198..209. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX675407 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 39/110 (35.45%), Postives = 64/110 (58.18%), Query Frame = -1
Query:  396 ISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEI 725
            +S NQ  GSIP  +G L+FLN + L  N L G +P    N   L+ L + +N+ SG++P  + NL +L+ +++  NQL+G + +  G    L+ L + +N  SG IP ++
Sbjct:  127 LSANQFTGSIPESLGTLSFLNDMSLNDNLLSGELPDVFQNLVGLINLDISSNNISGTLPPSMENLLTLTTLRVQNNQLSGTLDVLQG--LPLQDLNIENNLFSGPIPDKL 234          
BLAST of CX675407 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 40/112 (35.71%), Postives = 59/112 (52.68%), Query Frame = -1
Query:  402 TILHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQ 737
            T L +    L+G +P  +G L  L  L    N L G +P   +N T L +LYL  N+FSG IP  +  L ++  + L  N   G IP ++ + T L  L+L  N+L+G IP+
Sbjct:   66 TALRLPGVGLSGPLPIAIGNLTKLETLSFRFNALNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTLPNIIRINLAQNNFLGRIPDNVNSATRLATLYLQDNQLTGPIPE 177          
BLAST of CX675407 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 41/109 (37.61%), Postives = 59/109 (54.13%), Query Frame = -1
Query:  405 LHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIP 731
            L ++   L+G +   +G+L  L+ L+L +N L G IP  L   + L  L L  N FSG IP  +G L  L+ ++L  N L+G +P  +  L+ L FL L  N LSG  P
Sbjct:   84 LEMASKGLSGILSTSIGELTHLHTLLLQNNQLTGPIPSELGQLSELETLDLSGNRFSGEIPASLGFLTHLNYLRLSRNLLSGQVPHLVAGLSGLSFLDLSFNNLSGPTP 192          
BLAST of CX675407 vs. ExPASy Swiss-Prot
Match: RLK90_ARATH (Probable inactive receptor kinase RLK902 OS=Arabidopsis thaliana GN=RLK902 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = -1
Query:  414 TILHISRNQLNGSIPHEV-GQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSG 737
            T L +    L+G IP  + G L  L  L L  N L GS+P  L + ++L  LYL  N FSG IP+ + +L +L  + L  N+ +G I     NLT L+ L+L +N+LSG
Sbjct:   73 TALRLPGETLSGHIPEGIFGNLTQLRTLSLRLNGLTGSLPLDLGSCSDLRRLYLQGNRFSGEIPEVLFSLSNLVRLNLAENEFSGEISSGFKNLTRLKTLYLENNKLSG 181          
BLAST of CX675407 vs. ExPASy Swiss-Prot
Match: PGIP_PYRCO (Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 42/103 (40.78%), Postives = 58/103 (56.31%), Query Frame = -1
Query:  405 LNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGN-LTNLRFLFLYHNELSGIIP 710
            L G I   + +L  L  L L    L GS+P  LS   NL FL L  N+ +G+IP  +  L +L  ++L  N+L G IP+S G  + N+  L+L HN+LSG IP
Sbjct:  107 LTGPIQPAIAKLKGLKSLRLSWTNLSGSVPDFLSQLKNLTFLDLSFNNLTGAIPSSLSELPNLGALRLDRNKLTGHIPISFGQFIGNVPDLYLSHNQLSGNIP 209          
BLAST of CX675407 vs. ExPASy Swiss-Prot
Match: Y1719_ARATH (Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 46/113 (40.71%), Postives = 59/113 (52.21%), Query Frame = -1
Query:  396 LHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTN-LVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEI 731
            L +   QL G IP  +     L  L L  N L GSIP  + ++   LV L L  N   GSIP QI   K L+ + L  N+L+G+IP  +  L  LR L L  N+LSG IP E+
Sbjct:   77 LQLQSMQLAGEIPESLKLCRSLQSLDLSGNDLSGSIPSQICSWLPYLVTLDLSGNKLGGSIPTQIVECKFLNALILSDNKLSGSIPSQLSRLDRLRRLSLAGNDLSGTIPSEL 189          
BLAST of CX675407 vs. ExPASy Swiss-Prot
Match: Y2242_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Arabidopsis thaliana GN=At2g24230 PE=2 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 6.954e-11
Identity = 45/159 (28.30%), Postives = 70/159 (44.03%), Query Frame = -1
Query:  264 ILHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGN-LKSLSDMKLCINQLNGAIPLSIGNLTNLRFLFLYHNELSGIIPQEIEXXXXXXXXXXXXXNFRGQVLKSF-RNLTDLVKLRLNQNYLTGNI 734
            +L IS N  +G+IP  V  L  L  L L  N    SIPR L    +LV + L +N   GS+P   G+    L  + L  N+++G       ++ ++ FL +  N+  G +    +              F+G +      N   LV L L++N L+G I
Sbjct:  143 LLDISYNNFSGAIPEAVDSLVSLRVLKLDHNGFQMSIPRGLLGCQSLVSIDLSSNQLEGSLPDGFGSAFPKLETLSLAGNKIHGR-DTDFADMKSISFLNISGNQFDGSVTGVFK--ETLEVADLSKNRFQGHISSQVDSNWFSLVYLDLSENELSGVI 298          

HSP 2 Score: 38.5058 bits (88), Expect = 6.954e-11
Identity = 17/40 (42.50%), Postives = 27/40 (67.50%), Query Frame = -3
Query:   25 LQYLDLSSNYIVGEIPTQLGNIIYLNRLSLSGNKLSGRIP 144
            L+YL+LS+  + G IP ++  +  L+ L +SGN L+G IP
Sbjct:  331 LEYLNLSNTNLSGHIPREISKLSDLSTLDVSGNHLAGHIP 370          
BLAST of CX675407 vs. ExPASy Swiss-Prot
Match: GEFL_DICDI (Ras guanine nucleotide exchange factor L OS=Dictyostelium discoideum GN=gefL PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 8.785e-11
Identity = 54/154 (35.06%), Postives = 72/154 (46.75%), Query Frame = -1
Query:  273 LHISRNQLNGSIPHEVGQLNFLNHLILYSNFLGGSIPRSLSNFTNLVFLYLYNNSFSGSIPQQIGNLKSLSDMKLCINQLNGAIPLSIGN-LTNLRFLFLYHNELSGIIPQEIEXXXXXXXXXXXXXNFRGQVLKSFRNLTDLVKLRLNQNYLT 731
            L++  NQ + + P  + +L  L  L  +SN L  SIP  +     L  L L  N    SIP +I NLKSL+ +  C + +  +IP  +GN L+ L FLFL HN+L   IP EI                 GQ          LV LRLN N +T
Sbjct:  144 LYLDENQFS-NFPSHLCELQKLTTLG-FSNNLLKSIPTQIGQMIGLKKLILSGNQME-SIPMEISNLKSLTHLD-CSSNILSSIPNELGNKLSQLSFLFLQHNKLRS-IPDEI-----------------GQ-------CQSLVSLRLNNNSIT 268          

HSP 2 Score: 31.9574 bits (71), Expect = 8.785e-11
Identity = 19/45 (42.22%), Postives = 25/45 (55.56%), Query Frame = -3
Query:   40 IPFEIGESPQLQYLDLSSNYIVGEIPTQLGNIIYLNRLSLSGNKL 174
            +P  IGE   LQ L L  N +   +P++LGN   L +L L  NKL
Sbjct:  270 LPQSIGELENLQELYLQENRL-NTLPSELGNCCSLKKLYLEFNKL 313          
The following BLAST results are available for this feature:
BLAST of CX675407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
SRF3_ARATH8.305e-1235.45Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]
Y5659_ARATH1.085e-1135.71Probable inactive receptor kinase At5g16590 OS=Ara... [more]
Y5457_ARATH1.085e-1137.61Probable LRR receptor-like serine/threonine-protei... [more]
RLK90_ARATH1.850e-1139.45Probable inactive receptor kinase RLK902 OS=Arabid... [more]
PGIP_PYRCO2.416e-1140.78Polygalacturonase inhibitor OS=Pyrus communis GN=P... [more]
Y1719_ARATH3.156e-1140.71Probable inactive receptor kinase At1g27190 OS=Ara... [more]
Y2242_ARATH6.954e-1128.30Probable LRR receptor-like serine/threonine-protei... [more]
GEFL_DICDI8.785e-1135.06Ras guanine nucleotide exchange factor L OS=Dictyo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A10-B20-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675407 ID=CX675407; Name=CX675407; organism=Citrus sinensis; type=EST; length=737bp
ATTAATGAGTGACCCAAGCTCTCCAGGTATACGTCCAGAGAGTTTATTCC
CACTCAAACTAAGCCTGTTGAGATAAATTATATTTCCAAGTTGTGTTGGA
ATCTCACCAACAATATAATTTGAAGAAAGATCAAGATATTGTAACTGAGG
TGATTCTCCAATCTCAAACGGTATGTTTCCAGTAATATTATTTATTGAAA
TAAATAAATTGTTATTGCTGAGATCAATGAAAGTGAGGTTTGGATAAGTA
TCAAAAGTTTCGGTATATTTCCTGTTAAATAGTTTTGGTTAAGACGTAGT
TTGACTAGGTCGGTCAAATTTCTGAAGCTTTTGAGAACTTGACCTCGAAA
ATTGTTTTTAGTTAGCAGTAAAGAATTTAACTTCTTGAGATTTTCGATTT
CTTGAGGAATGATACCAGAAAGCTCATTATGATAAAGGAATAAGAATCTC
AAATTGGTTAAATTACCAATTGAAAGAGGTATAGCACCGTTAAGTTGATT
TATGCACAACTTCATATCAGAAAGTGACTTTAAGTTTCCTATTTGTTGAG
GAATGGAACCAGAAAATGAATTATTATAAAGATACAAAAAAACTAAGTTG
GTGAAATTGCTAAGAGAACGAGGGATTGAACCGCCCAAAAAATTAGAATA
TAAGATAAGGTGATTAAGAAAATTCAATTGGCCTACCTCATGTGGAATTG
AACCATTCAATTGATTTCTAGAAATGTGAAGGATCGT
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