CX675406

Overview
NameCX675406
Unique NameCX675406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9880 contig Csv1_Contig9880:201..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA1_DROME (Proteasome subunit alpha type-1 OS=Drosophila melanogaster GN=Pros35 PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 6.169e-66
Identity = 125/234 (53.42%), Postives = 166/234 (70.94%), Query Frame = 2
Query:   20 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETL----QGETLKSSICTVAVVGAGEPFHILDQETVQK 709
            MFRNQYD+DVT WSP GRL QVEYAMEAVK G+A +GL++K + VL  + K  SELS  Q+KI  +DDH+G++IAGLTAD RVLSRY+RSEC+NY ++Y++  PV RL+  L +K Q  TQR  +RPYGVGLLVAG DE+G H+Y   PS  +F  +A +IGSRSQ+A+TYLE+    F +S+++++I+  + AI  TL    QG+       TVA+VG  +PF IL  +   K
Sbjct:    1 MFRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGTATVGLKNKDYAVLVALCKPTSELSDTQRKIIPIDDHLGISIAGLTADARVLSRYLRSECLNYKHSYDTTYPVSRLITNLGNKMQTTTQRYDRRPYGVGLLVAGYDERGPHIYQVTPSATFFNCKANSIGSRSQSARTYLEKNLNKFLDSSKDEIIRHGIRAILGTLPTDEQGKDAGQYDITVAIVGKDQPFTILSNKDSAK 234          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA1_SCHPO (Probable proteasome subunit alpha type-1 OS=Schizosaccharomyces pombe GN=SPAC6G10.04c PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.541e-64
Identity = 124/247 (50.20%), Postives = 169/247 (68.42%), Query Frame = 2
Query:   20 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETL-QGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFDIAGTEEGPAA 757
            MFRNQYD D TTWSP GRL QVEYA+EA+KQGSA +GL SKTH VL  + +   ELSS+QKK+ ++DDHIG+AIAGL  D RVLS YM+ E ++    +  P+PV RL+ ++A+KAQ+ TQ   +RPYGVG LV G DE G HL    PSG   EY   ++GSRSQ+A+TY+ER  + F +S+RE+LI  AL A+R+TL + + L     +++V+G  E + + DQ   ++ +D       ++GPAA
Sbjct:    1 MFRNQYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQKKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSREELILSALRALRDTLSKDQELTEENVSISVIGKDEKYTLYDQNDTKEWLDKLG----DKGPAA 243          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA1_CHICK (Proteasome subunit alpha type-1 OS=Gallus gallus GN=PSMA1 PE=2 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 1.286e-63
Identity = 119/238 (50.00%), Postives = 163/238 (68.49%), Query Frame = 2
Query:   41 TDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFDIAGTEEGP 751
            +DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL  + +A SEL++HQKKI  VD+HIG++IAGLTAD R+L  +MR EC++  + ++ PLPV RLV  +  K Q+ TQR  +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+ YLER    F++    +L+K  L A+RETL  E  L +   ++ +VG    F I D + V   ++     G EE P
Sbjct:    7 SDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILYVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCKAMSIGARSQSARNYLERHMTEFTDCNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDMEFTIYDDDDVAPFLE-----GLEERP 239          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA1_TRYCR (Proteasome subunit alpha type-1 OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.742e-63
Identity = 121/247 (48.99%), Postives = 173/247 (70.04%), Query Frame = 2
Query:   20 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKAN-SELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI-RETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFDIAGTEEGPA 754
            MF+NQYDT+ TTWSP GRLFQVEYA EAV  GSAA+G ++K  VVL  + ++  ++ SS+Q+K+FK+DDH+G+AIAGL ADGR+L+R++R+EC+NY Y ++S  P+  +   + +K Q   Q + KRP+GVGLL+AG D  G HLY+  PSG+ F+++A A+G RSQAA+TYLE+ FE+F +   ++LI  AL A+   T  G  L     T+A+VG G PF +L +E  +K +D F +   +  PA
Sbjct:    1 MFKNQYDTNTTTWSPTGRLFQVEYANEAVNNGSAAVGAKNKDFVVLTALKRSPVAQFSSYQEKVFKLDDHVGMAIAGLVADGRMLARFVRTECMNYRYMHDSDNPLPLIAEIVGEKYQRHIQFAGKRPFGVGLLIAGYDSTGPHLYHTVPSGDVFDFKATAMGLRSQAARTYLEKHFESFPDCGLDELIMHALKALAAATSGGAELNIKNTTIAIVGKGTPFMVLTEEAARKYLDGFKMRPEDIPPA 247          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA1_CAEEL (Proteasome subunit alpha type-1 OS=Caenorhabditis elegans GN=pas-6 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.270e-60
Identity = 110/229 (48.03%), Postives = 161/229 (70.31%), Query Frame = 2
Query:   20 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQG-ETLKSSICTVAVVGAGEPFHILDQETV 703
            MFRNQYD DVT WSP GRL QVEYA+EA+KQGSA +G++S+TH V+  + +A ++LSSHQKK++++D H GV+IAGL +DGR+L+RY+++EC ++ + Y+  +P+ +L   +  K Q  TQ   +RP+GVG+L+AG D+ GAH+    PS         +IG+RSQ+A+TYLER  +NF +ST E LI  AL+A+R+TL   E L +   ++ +VG   PF +L+   V
Sbjct:    1 MFRNQYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDLSSHQKKVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGILIAGYDKDGAHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEKSTPEQLIVHALLALRDTLPAEENLNAQNTSIGIVGKDSPFSLLEDAQV 229          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBR (Proteasome subunit alpha type-1 OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.873e-60
Identity = 120/237 (50.63%), Postives = 161/237 (67.93%), Query Frame = 2
Query:   20 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKAN-SELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI-RETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSF 724
            MF+NQYDTD TTWSP GRLFQVEYA EAV  GSAA+G++   +VVL  + +   S LSS+Q+K FK+D+H+G+AI+GL ADGR LSR++R+EC+NY Y ++S  P+  L   +  K Q   Q + KRP+GVGLL+AG D +G  LY   PSG+ F+++A A+G RSQAA+TYLER F  F     ++L+  AL A+   T  G  L     T+A+VG G PF IL +E  +K +D F
Sbjct:    1 MFKNQYDTDTTTWSPTGRLFQVEYANEAVNNGSAAVGVKGADYVVLTALKRNPVSGLSSYQEKAFKLDEHVGMAISGLVADGRALSRFLRTECMNYRYMHDSDAPLVMLADIVGAKHQRHIQFAGKRPFGVGLLIAGYDRQGPRLYQTVPSGDVFDFKATAMGLRSQAARTYLERHFRGFPACDLDELVMHALRALGAATSGGVELNIKNTTIAIVGKGTPFTILTEEEARKYLDGF 237          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA1_YEAST (Proteasome component PRE5 OS=Saccharomyces cerevisiae GN=PRE5 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.393e-56
Identity = 119/234 (50.85%), Postives = 149/234 (63.68%), Query Frame = 2
Query:   20 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENF--SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 715
            MFRN YD D  T+SP GRLFQVEYA+EA+KQGS  +GLRS TH VL  + +   ELSS+QKKI K D+H+G+++AGL  D RVLS Y+R +C   S  +   L V R    L DKAQ  TQ    RPYGVGLL+ G D+ GAHL    PSGN  E    AIG+RSQ AKTYLER  + F   +   ++LIK  + AI ++L+ E+L     ++A+VG   PF I D E V K I
Sbjct:    1 MFRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 234          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.610e-40
Identity = 99/234 (42.31%), Postives = 140/234 (59.83%), Query Frame = 2
Query:   20 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL-SSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA------QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQE 697
            M R++YD  V T+SP GRLFQVEYA+EA+K GS AIG+++K  VVLG   +  S L  SH  +K+F++D HIG AI+GLTAD R +  + R +  N+ +TY+ P  +      + D A      +   +R   RP+GV LL+AG+DE G  LY++ PSG YF Y+A AIGS S+ AK+ L + F    + T E+     L  +R+ ++ E L S    +A V A   FHI + E
Sbjct:    3 MTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFH--KDMTLEEAEVLILKVLRQVME-EKLDSKNVQLAKVTAEGGFHIYNDE 233          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.607e-37
Identity = 93/239 (38.91%), Postives = 139/239 (58.16%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFDIAGTEE 745
            YD  +T +SP GRLFQVEYA EAVK+G+ A+G++ +  VVLG   +  S+L   +  +K++++D HIG A AGL AD RVL    R E   Y YTY  P+ V  LV  + D  QV TQ    RP+G  LL+AG+D KG  L+   PSG   E++A AIG   Q A    E  +    + T ++ I+ A+ A+ E  + ET   ++  +AVV   + F  L+++ ++++ +   + G+EE
Sbjct:   10 YDRAITVFSPDGRLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLIEPESIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVDTKGCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYR--EDMTLQEAIELAVRALYEASREETTADNL-EIAVVDK-QGFRKLERKKIEEMFER--VVGSEE 242          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.858e-37
Identity = 87/214 (40.65%), Postives = 134/214 (62.62%), Query Frame = 2
Query:   32 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 661
            +YD+  T +SP GRL+QVEYAMEA+    +AIG+ +K  VVL    K  S+L   S+  +K++K+DDH+  A+AG+ +D  +L    R +   Y+++Y+ P+PV +LV  L D  Q  TQ    RP+GV  L AG D+  G  LY + PSGNY  ++A AIG+ +QAA++ L++ +++  + TRED +K AL A+ +T+   +L S    +A V
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILAKDGVVLIGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKATAIGANNQAAQSMLKQDYKD--DVTREDAVKLALKALSKTMDSTSLTSEKLELAEV 215          
The following BLAST results are available for this feature:
BLAST of CX675406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA1_DROME6.169e-6653.42Proteasome subunit alpha type-1 OS=Drosophila mela... [more]
PSA1_SCHPO7.541e-6450.20Probable proteasome subunit alpha type-1 OS=Schizo... [more]
PSA1_CHICK1.286e-6350.00Proteasome subunit alpha type-1 OS=Gallus gallus G... [more]
PSA1_TRYCR3.742e-6348.99Proteasome subunit alpha type-1 OS=Trypanosoma cru... [more]
PSA1_CAEEL2.270e-6048.03Proteasome subunit alpha type-1 OS=Caenorhabditis ... [more]
PSA1_TRYBR3.873e-6050.63Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSA1_YEAST3.393e-5650.85Proteasome component PRE5 OS=Saccharomyces cerevis... [more]
PSA5_SCHPO2.610e-4042.31Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSMA_METKA4.607e-3738.91Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSA4_SPIOL7.858e-3740.65Proteasome subunit alpha type-4 OS=Spinacia olerac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A08-B16-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675406 ID=CX675406; Name=CX675406; organism=Citrus sinensis; type=EST; length=759bp
GAAAGATTAAACCCTAAAAATGTTTAGGAACCAATACGACACCGACGTGA
CAACATGGAGCCCCGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAG
GCCGTCAAGCAAGGCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGT
GGTCTTGGGCTGCGTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGA
AGAAGATCTTCAAGGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTC
ACCGCCGACGGCCGTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAA
CTACAGTTACACTTACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCC
AGCTCGCTGACAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCA
TATGGTGTTGGCCTGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCT
TTATTATAACTGCCCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCA
TTGGGTCCCGATCTCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAG
AACTTTTCAGAATCTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGC
AATAAGGGAAACCTTACAAGGAGAAACACTAAAGAGTTCTATTTGCACAG
TTGCTGTGGTAGGAGCTGGGGAGCCATTTCATATTTTAGATCAAGAAACT
GTACAAAAGTTAATTGATTCATTTGACATTGCTGGCACTGAAGAGGGTCC
TGCTGCTGC
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