CX675406

Overview
NameCX675406
Unique NameCX675406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9880 contig Csv1_Contig9880:201..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA6_DROME (Proteasome subunit alpha type-6 OS=Drosophila melanogaster GN=Prosalpha1 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.894e-21
Identity = 70/231 (30.30%), Postives = 121/231 (52.38%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGS-AAIGLRSKTHVVLGCVNKANSE--LSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFE-NFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEP-FHILDQETVQK 709
            +D  +T +SP GRL+QVEYA +A+ Q +   + L+S    V+    K   +  +      +F++   IG A+ G  AD R   +  R E  N+ Y Y   +PV  L  ++AD  QV TQ +  RP G  +++   D E G  +Y   P+G +  ++A ++G+++  A +YLE++++ N SE   E  I+ A+  +   L  +  K +   + VV   +P F ILD+  +++
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPETVTHLFRITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAEMRPLGCSMVLIAYDNEIGPSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYKPNLSE---EKAIQLAISCLSSVLAID-FKPNGIEIGVVSKSDPTFRILDEREIEE 235          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA6_YEAST (Proteasome component C7-alpha OS=Saccharomyces cerevisiae GN=SCL1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.317e-19
Identity = 68/234 (29.06%), Postives = 116/234 (49.57%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSA-AIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-----ENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQK 709
            YD  +T +SP GRL+QVEYA +A  Q +  ++ +R K   V+    K   +L   +    IF +   IG+ + G   D R  +   ++E   + Y Y   +P   L  ++A+ +Q+ TQR++ RP GV L    +DE+ G  +Y   P+G Y  Y+A A G + Q   T LE  F     ++ +E + E +++ A+  + + L  E  K+ +     V   + F  L  E +++
Sbjct:   12 YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDL--EVGVATKDKFFTLSAENIEE 243          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBB (Proteasome subunit alpha type-1 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.295e-17
Identity = 69/218 (31.65%), Postives = 110/218 (50.46%), Query Frame = 2
Query:   20 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQ-GSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGL---DEKGA---HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFEN--FSESTREDLIKDALMAIRETLQGETLKSS 640
            M R  +D  +T +SP G L+QVEYA +AV   G   + +R K  V++   +    +L   +    ++ V+D+ GV I G   DG+ L +  R+E   Y Y Y  P+ V  L     D AQV TQ++  R  G  +   G+   DE GA    +Y   P+G      A A+G +   A  +LE++ +N  F   ++++    AL A++  L GE+L++S
Sbjct:    1 MSRAGFDKYITVFSPEGSLYQVEYAFKAVTYAGLLTVAIRCKDAVLVFTQHSVPDKLMRPETITSLYNVNDNTGVCITGRAPDGKALVQKARNEASEYKYRYGMPMLVSVLAKPWQDMAQVRTQQAGMRLMGTIMTFVGMEQNDEDGAWIPQIYCVDPAGG-AAVHACAVGKKQIEACAFLEKKQKNAPFHTLSQKEAAMIALAALQSAL-GESLRAS 216          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.646e-16
Identity = 60/209 (28.71%), Postives = 101/209 (48.33%), Query Frame = 2
Query:  110 QGSAAIGLRSKTHVVLGCVNKAN-SELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFD 727
            +G+  +G+  K  VV     +A+   L +H+   KIFK+D+HI   IAG  AD + L +Y+++E   Y       + +       A+        S   P+ V  L+ G+DE GA +Y   PSG     +  + GS S  A   LE R+ +  E   ++ +  A+ AI+  ++ +T   +   VA V   E F +L +E +QK I++ +
Sbjct:    8 KGTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAAN----ILHSSRFYPFIVQTLLGGVDENGAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSD--ELYVDEAVDVAIRAIKSAMERDTYSGNGILVATVTEEEGFRMLSEEEIQKRIENLN 210          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA6_CAEEL (Proteasome subunit alpha type-6 OS=Caenorhabditis elegans GN=pas-1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.225e-15
Identity = 55/228 (24.12%), Postives = 105/228 (46.05%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGS-AAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQ 706
            +D  +T +SP GR++QVEYA +A+   +  A+ ++     V+    +    L  +     ++++   +G    G+  D +   +  + E  ++ Y     +P   L  ++AD  Q  TQ +  R  G  LL    D EKG  +Y   P+G Y   +  ++G +   A ++LE++ +  SE T  + I+ A+ A++ +L  +     +  V V      F  L  + V+
Sbjct:    9 FDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTSVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAIEALQTSLGIDVRSKDLEVVVVTKDNSKFTKLTSDQVE 236          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA1_ENCCU (Probable proteasome subunit alpha type-1 OS=Encephalitozoon cuniculi GN=PRE5 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 52/214 (24.30%), Postives = 101/214 (47.20%), Query Frame = 2
Query:   56 WSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGV-GLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRET-LQGETLKSSICTVAVVGAGEPFHILD 691
            ++P G + Q+++  +  + G  A+GL++++  VL   N+  S L+  QKK+F +D       +G+T DG  +  Y+  + +         +    +   L       T    +R YGV GL +   D  G  L    P G+  E +   IG R+Q+++T LE   E + +   E+L++  +MA++    + + L      + ++ AG+  + +D
Sbjct:   22 FNPEGCVKQLDFIRQTTELGGTAVGLKNRSVGVLIAHNERRSRLADIQKKVFSIDRKSLFTFSGITNDGLQIVDYLIDKSVREEVIKGRAIHFLDVFEDLLRDVFERTILDGRRLYGVSGLYMTEYD--GIRLVEFNPKGHVREVKGMGIGCRAQSSRTVLEAYCEEYEKMGVEELVRIGIMALKNAHPEDDALTGENVEIWILEAGKAVYNID 233          
The following BLAST results are available for this feature:
BLAST of CX675406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA6_DROME7.894e-2130.30Proteasome subunit alpha type-6 OS=Drosophila mela... [more]
PSA6_YEAST3.317e-1929.06Proteasome component C7-alpha OS=Saccharomyces cer... [more]
PSA1_TRYBB5.295e-1731.65Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSMB_METTH7.646e-1628.71Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSA6_CAEEL2.225e-1524.12Proteasome subunit alpha type-6 OS=Caenorhabditis ... [more]
PSA1_ENCCU3.324e-1124.30Probable proteasome subunit alpha type-1 OS=Enceph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A08-B16-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675406 ID=CX675406; Name=CX675406; organism=Citrus sinensis; type=EST; length=759bp
GAAAGATTAAACCCTAAAAATGTTTAGGAACCAATACGACACCGACGTGA
CAACATGGAGCCCCGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAG
GCCGTCAAGCAAGGCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGT
GGTCTTGGGCTGCGTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGA
AGAAGATCTTCAAGGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTC
ACCGCCGACGGCCGTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAA
CTACAGTTACACTTACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCC
AGCTCGCTGACAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCA
TATGGTGTTGGCCTGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCT
TTATTATAACTGCCCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCA
TTGGGTCCCGATCTCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAG
AACTTTTCAGAATCTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGC
AATAAGGGAAACCTTACAAGGAGAAACACTAAAGAGTTCTATTTGCACAG
TTGCTGTGGTAGGAGCTGGGGAGCCATTTCATATTTTAGATCAAGAAACT
GTACAAAAGTTAATTGATTCATTTGACATTGCTGGCACTGAAGAGGGTCC
TGCTGCTGC
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