CX675406

Overview
NameCX675406
Unique NameCX675406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9880 contig Csv1_Contig9880:201..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA4_ARATH (Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.286e-36
Identity = 88/236 (37.29%), Postives = 142/236 (60.17%), Query Frame = 2
Query:   32 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV----GAGEPFHILDQETVQKLI 715
            +YD+  T +SP GRL+QVEYAMEA+    +AIG+ SK  VVL    K  S+L   S+  +K++K+DDH+  A+AG+ +D  +L    R +   Y++ Y+ P+PV +LV  L D  Q  TQ    RP+GV  L AG D+  G  LY + PSGNY  ++A A+G+ +QAA++ L++ +++  ++TRE+ ++ AL  + +T+   +L S    +A V         +H+   E++ KL+
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYGGWKAAAVGANNQAAQSILKQDYKD--DATREEAVELALKVLTKTMDSTSLTSEKLELAEVYLTPSKTVKYHVHSPESLTKLL 237          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA7_CARAU (Proteasome subunit alpha type-7 OS=Carassius auratus GN=psma7 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.652e-36
Identity = 87/243 (35.80%), Postives = 141/243 (58.02%), Query Frame = 2
Query:   32 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ--GETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFDIAGTEE 745
            +YD  +T +SP G LFQVEYA EAVK+GS A+G+R K  VVLG   K+ ++L   +  +KI  +D+H+ +A AGLTAD R++    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D  G   LY   PSG Y  ++A AIG  ++  + +LE+ + + + ++  D IK A+ A+ E +Q  G+ ++     +AV+   +P  IL+ + ++ L+   +    EE
Sbjct:    4 RYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGKDIVVLGVEKKSVAKLQEERTVRKICALDEHVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIATLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTDEAIASDNDAIKLAIKALLEVVQSGGKNIE-----LAVIRRNQPLKILESKEIETLVAEIEKEKEEE 241          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.688e-36
Identity = 87/221 (39.37%), Postives = 136/221 (61.54%), Query Frame = 2
Query:   29 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS-SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHIL 688
            + Y   +TT+SP+G+L Q+E+A++A   G +AIG+++K  VVL    K +S +  +  +KI  + ++IG+  AG+  D RVL +  R E   Y   Y+  +PV +LV +LA   Q  TQ    RP+GV LLVAG DEKG HLY   PSG+YF ++A AIG    ++KT+LE+R+ +  E   ED I+ AL+ I+E  + +  + ++  +A++G  + F IL
Sbjct:    3 SDYSFSLTTFSPSGKLVQIEHALQAAASGGSAIGIKAKNGVVLITEKKLHSLVDVTSVQKISMITENIGLVYAGMGPDSRVLIKKARKESEKYYKQYKEKIPVLQLVRELASIMQEFTQSGGVRPFGVSLLVAGFDEKGPHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRYSDDLEI--EDAIQTALITIKEGFETQLTEFNM-ELAIIGKNQEFKIL 220          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA4_PETHY (Proteasome subunit alpha type-4 OS=Petunia hybrida GN=PAC1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.312e-35
Identity = 83/214 (38.79%), Postives = 132/214 (61.68%), Query Frame = 2
Query:   32 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 661
            +YD+  T +SP GRL+QVEYAMEA+    +AIG+ SK  VVL    K  S+L   S+  +K++K+DDH+  A+AG+ +D  +L    R +   Y+++Y+ P+PV +LV  L D  Q  TQ     P+GV  L AG D+  G  L+ + PSGNY  ++A AIG+ +QAA++ L++ +++  + TRE+ ++ AL  + +T+   +L S    +A V
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGISSKDGVVLVGEKKVTSKLLQTSTSSEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQYGGLPPFGVSFLFAGWDKNFGFQLFMSDPSGNYAGWKAAAIGANNQAAQSMLKQDYKD--DITREEAVQLALKVLSKTMDSTSLTSEKLELAEV 215          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA7_DICDI (Proteasome subunit alpha type-7 OS=Dictyostelium discoideum GN=psmA7 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.631e-35
Identity = 89/231 (38.53%), Postives = 134/231 (58.01%), Query Frame = 2
Query:   32 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 715
            +YD  +T +SP G LFQVEYAMEAV++G+ A+G+R K  +VLG   KA ++L   +  +KI K+DDHI +  AGLTAD RVL      EC +Y  T E    V  +   +A   Q  TQ    RP+G+  L+ G D  G  +LY   PSG+Y  ++A AIG  S++   +LE+   N+++ + E+ IK A+ A+ E ++       I   AV+   +P  +LD++ + KL+
Sbjct:    5 RYDRAITVFSPDGHLFQVEYAMEAVRKGTVAVGVRGKDVIVLGVEKKATAKLQDARSIRKIVKLDDHICLTFAGLTADSRVLISKALMECQSYRLTVEDSPSVEYISKFIAGIQQRYTQSGGVRPFGISTLIVGFDTDGTPNLYQTDPSGSYSSWKAAAIGRSSKSVGEFLEK---NYTDVSEEESIKLAVRALLEIVESGNKNIEI---AVIRNKQPIVLLDEQEIDKLV 229          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.355e-35
Identity = 92/231 (39.83%), Postives = 136/231 (58.87%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGE-PFHILDQETVQKLID 718
            YD  +T +SP GRLFQV+YA EAVK+G+ A+G++ K  VVL    +  S+L   +  +KIF++DDHI  A +G+ AD RVL    R E   Y  TY  P+P+  LV ++ D  Q+ TQ    RP+G  LL+AG++EK   L+   PSG YFE++A AIGS    A    E ++ +  E T E+ IK A++A+ + ++  + +S    VAV+   E  F  +  E V K ++
Sbjct:   10 YDRAITVFSPDGRLFQVQYAREAVKRGATAVGVKCKDGVVLAVEKRVTSKLIEPESYEKIFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMHTQYGGVRPFGAALLMAGVNEK-PELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEKYRD--EMTLEEAIKLAVLALSKIMEEPSPES--IEVAVISVKEKKFKKITPEEVAKCLE 235          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA5B_ARATH (Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 7.355e-35
Identity = 88/235 (37.45%), Postives = 134/235 (57.02%), Query Frame = 2
Query:   26 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA---QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 715
            R +YD  V T+SP GRLFQVEYA+EA+K GS AIG+++K  VVL    +  S L   S  +KI ++DDHIG A++GL AD R L  + R E  N+ ++Y  P+ V      L D A       + S  RP+GV LL+AG DE G  LYY  PSG +++  A AIGS S+ A + L+ +F    + T ++    A+  +++ ++ +   +++    V  A   +H+   + V+ +I
Sbjct:    5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFN--KDITLQEAETIAVSILKQVMEEKVTPNNVDIAKVAPA---YHLYTPQEVEAVI 234          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.638e-34
Identity = 83/197 (42.13%), Postives = 118/197 (59.90%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVN-KANSELSSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 619
            YD  +T +SP G L+QV+YA EAVK+G  AIG++SK+ VV+     KA S L     +K+F +DDH+G + AGL +DGRVL  Y R+  + +   Y+ P+ +  L   +AD  Q+ TQ    RP+GV L++AG+D+    LY   PSG Y  YQA AIG     A  +LE+ ++   + T ED I  AL A+  TL+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYK--EDLTIEDTILLALKALSATLK 204          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.638e-34
Identity = 83/197 (42.13%), Postives = 118/197 (59.90%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVN-KANSELSSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 619
            YD  +T +SP G L+QV+YA EAVK+G  AIG++SK+ VV+     KA S L     +K+F +DDH+G + AGL +DGRVL  Y R+  + +   Y+ P+ +  L   +AD  Q+ TQ    RP+GV L++AG+D+    LY   PSG Y  YQA AIG     A  +LE+ ++   + T ED I  AL A+  TL+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYK--EDLTIEDTILLALKALSATLK 204          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.638e-34
Identity = 83/197 (42.13%), Postives = 118/197 (59.90%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVN-KANSELSSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 619
            YD  +T +SP G L+QV+YA EAVK+G  AIG++SK+ VV+     KA S L     +K+F +DDH+G + AGL +DGRVL  Y R+  + +   Y+ P+ +  L   +AD  Q+ TQ    RP+GV L++AG+D+    LY   PSG Y  YQA AIG     A  +LE+ ++   + T ED I  AL A+  TL+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYK--EDLTIEDTILLALKALSATLK 204          
The following BLAST results are available for this feature:
BLAST of CX675406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA4_ARATH2.286e-3637.29Proteasome subunit alpha type-4 OS=Arabidopsis tha... [more]
PSA7_CARAU6.652e-3635.80Proteasome subunit alpha type-7 OS=Carassius aurat... [more]
PSA2_DICDI8.688e-3639.37Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]
PSA4_PETHY4.312e-3538.79Proteasome subunit alpha type-4 OS=Petunia hybrida... [more]
PSA7_DICDI5.631e-3538.53Proteasome subunit alpha type-7 OS=Dictyostelium d... [more]
PSMA_THESM7.355e-3539.83Proteasome subunit alpha OS=Thermococcus sibiricus... [more]
PSA5B_ARATH7.355e-3537.45Proteasome subunit alpha type-5-B OS=Arabidopsis t... [more]
PSMA_SULIY1.638e-3442.13Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN1.638e-3442.13Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIM1.638e-3442.13Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A08-B16-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675406 ID=CX675406; Name=CX675406; organism=Citrus sinensis; type=EST; length=759bp
GAAAGATTAAACCCTAAAAATGTTTAGGAACCAATACGACACCGACGTGA
CAACATGGAGCCCCGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAG
GCCGTCAAGCAAGGCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGT
GGTCTTGGGCTGCGTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGA
AGAAGATCTTCAAGGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTC
ACCGCCGACGGCCGTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAA
CTACAGTTACACTTACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCC
AGCTCGCTGACAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCA
TATGGTGTTGGCCTGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCT
TTATTATAACTGCCCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCA
TTGGGTCCCGATCTCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAG
AACTTTTCAGAATCTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGC
AATAAGGGAAACCTTACAAGGAGAAACACTAAAGAGTTCTATTTGCACAG
TTGCTGTGGTAGGAGCTGGGGAGCCATTTCATATTTTAGATCAAGAAACT
GTACAAAAGTTAATTGATTCATTTGACATTGCTGGCACTGAAGAGGGTCC
TGCTGCTGC
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