CX675406

Overview
NameCX675406
Unique NameCX675406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9880 contig Csv1_Contig9880:201..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.767e-34
Identity = 87/235 (37.02%), Postives = 131/235 (55.74%), Query Frame = 2
Query:   26 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA---QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 715
            R +YD  V T+SP GRLFQVEYA+EA+K GS AIGL++K  VVL    +  S L   S  +KI ++D+HIG A++GL AD R L  + R E  N+ ++Y  P+ V      L D A       + S  RP+GV LL+AG DE G  LYY  PSG +++    AIGS S+ A + L+ +F    + T ++    AL  +++ ++ +   ++   V +      +H+     V+ +I
Sbjct:    5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQEQFN--KDLTLQEAETIALSILKQVMEEKVTPNN---VDIAKVAPTYHLYTPSEVEAVI 234          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA2_TRYBB (Proteasome subunit alpha type-2 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.226e-34
Identity = 83/226 (36.73%), Postives = 125/226 (55.31%), Query Frame = 2
Query:   47 VTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLID 718
            +TT+SP+GRL Q+EYA  A  +G+ A+G+++   VV+    K  S L+      K+F +DDH+G   +G+  D RVL    R  C  Y  TY  P+P+ +LV Q++   Q  TQ    RP+G  LLVAG D +G HLY   PSG ++ ++A +IG  S  A+T+LE+R+ N  E   ED +  AL+ ++E   G     +     VV     F +L  E ++  +D
Sbjct:    8 LTTFSPSGRLVQIEYATTAASKGTTALGVKATDGVVIAAEKKTTSPLADSLTLHKVFALDDHVGCTYSGIGPDCRVLVDAARRACQRYRLTYHEPMPISQLVRQISFLFQEFTQSGGVRPFGCSLLVAGADSRGNHLYQLDPSGTFWTWKATSIGKGSPDARTFLEKRYTN--EMEIEDAVHTALLTLKEGFDGRMTAENTQVGRVVEG--RFELLTVEQLKDYLD 229          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA7L_MACFA (Proteasome subunit alpha type-7-like OS=Macaca fascicularis GN=PSMA7L PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.132e-34
Identity = 82/238 (34.45%), Postives = 136/238 (57.14%), Query Frame = 2
Query:   29 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKG-AHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ--GETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFD 727
            ++YD  +T +SP G LFQVEYA EAVK+GS A+G+R    VVLG   K+ ++L   +  +KI  +DDH+ +A AGLTAD RV+    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D+ G   LY   PSG Y  ++A AIG  ++  + +LE+ +   + ++  + IK A+ A+ E +Q  G+ ++     +A++   +P  +   + V+  +   +
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDNEAIKLAIKALLEVVQSGGKNIE-----LAIIRRNQPLKMFSAKEVELYVTEIE 235          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.062e-33
Identity = 91/229 (39.74%), Postives = 130/229 (56.77%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 715
            YD  +T +SP GRLFQV YA EAVK+G+ A+G++ K  VVL    +  S+L   S  +KIF++DDHI  A +G+ AD RVL    R E   Y  TY  P+P+  LV ++ D  Q  TQ    RP+G  LL+AG+++K   LY   PSG YFE++A AIGS    A    E  + +  +   E  IK A++A+ +TL+ E    SI    +    + +  +D+E V K +
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKEGVVLAVEKRITSKLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNDK-PELYETDPSGAYFEWRAVAIGSGRNTAMAIFEDHYSD--DLDMEGAIKLAILALAKTLE-EPSPESIEVAYITMKDKRWKKMDKEEVAKYL 234          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.062e-33
Identity = 86/229 (37.55%), Postives = 128/229 (55.90%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 715
            YD  +T +SP GRLFQV YA EAVK+G+ A+G++    VVL    +  S L      +KIF++DDHI  A +G+ AD RVL    R E   Y  TY  P PV  +V ++ D  Q+ TQ    RP+G  LL+AG++++   LY   PSG YF ++A AIGS    A    E ++ +  +   ED IK ALMA+ +T++  +   +I    +    + F  L ++ ++K +
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCGEGVVLAVEKRITSRLIEPDSYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMHTQYGGVRPFGAALLMAGINDR-PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRD--DMNLEDAIKLALMALAKTMENPS-ADNIEVAVITVKDKKFRKLTRDEIEKYL 234          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA7L_MOUSE (Proteasome subunit alpha type-7-like OS=Mus musculus GN=Psma8 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.062e-33
Identity = 82/231 (35.50%), Postives = 134/231 (58.01%), Query Frame = 2
Query:   29 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKG-AHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ--GETLKSSICTVAVVGAGEPFHILDQETVQ 706
            ++YD  +T +SP G LFQVEYA EAVK+GS A+G+R    VVLG   K+ ++L   +  +KI  +DDH+ +A AGLTAD RV+    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D+ G   LY   PSG Y  ++A AIG  ++  + +LE+ +   + S  ++ IK A+ A+ E +Q  G+ ++     +A++   +P  +   + ++
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDKEAIKLAIKALLEVVQSGGKNIE-----LAIIRRDQPLKMFSAKEIE 228          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_THEK1 (Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.387e-33
Identity = 85/200 (42.50%), Postives = 119/200 (59.50%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGET 628
            YD  +T +SP GRLFQV YA EAVK+G+ A+G++ K  VVL    +  S+L   S  +KIF +DDHI  A +G+ AD RVL    R E   Y  TY  P+P+  LV ++ D  Q  TQ    RP+G  LL+AG++EK   L+   PSG YFE++A AIGS    A    E  + +  +  ++D IK A++A+ +TL+  T
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNEK-PELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRD--DIGKDDAIKLAILALAKTLEEPT 206          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_PYRKO (Proteasome subunit alpha OS=Pyrococcus kodakaraensis GN=psmA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.387e-33
Identity = 85/200 (42.50%), Postives = 119/200 (59.50%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGET 628
            YD  +T +SP GRLFQV YA EAVK+G+ A+G++ K  VVL    +  S+L   S  +KIF +DDHI  A +G+ AD RVL    R E   Y  TY  P+P+  LV ++ D  Q  TQ    RP+G  LL+AG++EK   L+   PSG YFE++A AIGS    A    E  + +  +  ++D IK A++A+ +TL+  T
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNEK-PELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRD--DIGKDDAIKLAILALAKTLEEPT 206          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_THEAC (Proteasome subunit alpha OS=Thermoplasma acidophilum GN=psmA PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.812e-33
Identity = 90/231 (38.96%), Postives = 131/231 (56.71%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRETL-QGETLKSSICTVAVVGAGEPFHILDQETVQKLI 715
            YD  +T +SP GRLFQVEYA EAVK+GS A+G++    V+L    K  S L      +KI  +DD++    +GL AD RVL  + R        TY S + +  LV ++AD+ Q  TQ    RPYGV L+ AG+D+ G  L+   P+G   EY+A AIGS   A  ++LER + EN  E   ++ +   + A++ +L +GE LK+    +A +  G  + I DQE V+K +
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPE---KEAVTLGIKALKSSLEEGEELKAP--EIASITVGNKYRIYDQEEVKKFL 233          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.812e-33
Identity = 87/233 (37.34%), Postives = 134/233 (57.51%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ---GETLKSSICTVAVVGAGEPFHILDQETVQKLID 718
            YD  +T +SP GRLFQV YA EAVK+G+ A+G++    VVL    +  S L   +  +KIF++DDHI  A +G+ AD RVL    R E   +  TY  P P+  +V ++ D  Q+ TQ    RP+G  LL+AG++EK   LY   PSG YF ++A AIGS    A    E ++++  + + E+ IK A+ A+ +T++    E ++ +I TV      + F  L +E ++K ++
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCNEGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVNEK-PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYKD--DMSLEEAIKLAIFALAKTMEKPSAENIEVAIITV----KDKKFRKLSREEIEKYLN 235          
The following BLAST results are available for this feature:
BLAST of CX675406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA5_SOYBN4.767e-3437.02Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]
PSA2_TRYBB6.226e-3436.73Proteasome subunit alpha type-2 OS=Trypanosoma bru... [more]
PSA7L_MACFA8.132e-3434.45Proteasome subunit alpha type-7-like OS=Macaca fas... [more]
PSMA_THEON1.062e-3339.74Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSMA_PYRFU1.062e-3337.55Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]
PSA7L_MOUSE1.062e-3335.50Proteasome subunit alpha type-7-like OS=Mus muscul... [more]
PSMA_THEK11.387e-3342.50Proteasome subunit alpha OS=Thermococcus sp. (stra... [more]
PSMA_PYRKO1.387e-3342.50Proteasome subunit alpha OS=Pyrococcus kodakaraens... [more]
PSMA_THEAC1.812e-3338.96Proteasome subunit alpha OS=Thermoplasma acidophil... [more]
PSMA_PYRHO1.812e-3337.34Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A08-B16-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675406 ID=CX675406; Name=CX675406; organism=Citrus sinensis; type=EST; length=759bp
GAAAGATTAAACCCTAAAAATGTTTAGGAACCAATACGACACCGACGTGA
CAACATGGAGCCCCGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAG
GCCGTCAAGCAAGGCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGT
GGTCTTGGGCTGCGTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGA
AGAAGATCTTCAAGGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTC
ACCGCCGACGGCCGTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAA
CTACAGTTACACTTACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCC
AGCTCGCTGACAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCA
TATGGTGTTGGCCTGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCT
TTATTATAACTGCCCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCA
TTGGGTCCCGATCTCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAG
AACTTTTCAGAATCTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGC
AATAAGGGAAACCTTACAAGGAGAAACACTAAAGAGTTCTATTTGCACAG
TTGCTGTGGTAGGAGCTGGGGAGCCATTTCATATTTTAGATCAAGAAACT
GTACAAAAGTTAATTGATTCATTTGACATTGCTGGCACTGAAGAGGGTCC
TGCTGCTGC
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