CX675406

Overview
NameCX675406
Unique NameCX675406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9880 contig Csv1_Contig9880:201..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.366e-33
Identity = 86/232 (37.07%), Postives = 133/232 (57.33%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ---GETLKSSICTVAVVGAGEPFHILDQETVQKLI 715
            YD  +T +SP GRLFQV YA EAVK+G+ A+G++ K  VVL    +  S L   +  +KIF++DDHI  A +G+ AD RVL    R E   +  TY  P P+  +V ++ D  Q+ TQ    RP+G  LL+AG+++K   LY   PSG YF ++A AIGS    A    E ++ +  + T ++ IK A+ A+ +T++    E ++ ++ TV      + F  L +E ++K +
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCKDGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVNDK-PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEDKYRD--DMTLDEAIKLAIFALAKTMEKPSAENIEVAVITV----KDKKFRKLSKEEIEKFL 234          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.366e-33
Identity = 83/222 (37.39%), Postives = 128/222 (57.66%), Query Frame = 2
Query:   29 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHIL 688
            +QY   +TT+SP+G+L Q+E+A+ AV  G  ++G+++   VV+    K  S L   +  +KI  +  +IGV  +G+  D RVL R  R +   Y   Y+ P+PV +LV + A   Q  TQ    RP+GV LLVAG D+KG  LY   PSG+YF ++A A+G     AKT+LE+R+    E   +D I  A++ ++E  +GE + S    +  +GA + F +L
Sbjct:    4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME--LDDAIHTAILTLKEGFEGE-ISSKNIEIGKIGADKVFRVL 222          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA7B_XENLA (Proteasome subunit alpha type-7-B OS=Xenopus laevis GN=psma7-B PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.090e-33
Identity = 83/232 (35.78%), Postives = 136/232 (58.62%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ--GETLKSSICTVAVVGAGEPFHILDQETVQKLI 715
            YD  +T +SP G LFQVEYA EAVK+GS A+G+R K  VVLG   K+ ++L   +  +KI  +D+++ +A AGLTAD R++    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D  G   LY   PSG Y  ++A AIG  +++ + +LE+ + + +  T +  IK  + A+ E +Q  G+ ++     +AV+   +P  IL+ E +++ +
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKLVIKALLEVVQSGGKNIE-----LAVMRRDQPLKILNPEEIERYV 229          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA7A_XENLA (Proteasome subunit alpha type-7-A OS=Xenopus laevis GN=psma7-A PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.090e-33
Identity = 83/232 (35.78%), Postives = 136/232 (58.62%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ--GETLKSSICTVAVVGAGEPFHILDQETVQKLI 715
            YD  +T +SP G LFQVEYA EAVK+GS A+G+R K  VVLG   K+ ++L   +  +KI  +D+++ +A AGLTAD R++    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D  G   LY   PSG Y  ++A AIG  +++ + +LE+ + + +  T +  IK  + A+ E +Q  G+ ++     +AV+   +P  IL+ E +++ +
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKLVIKALLEVVQSGGKNIE-----LAVMRRDQPLKILNPEEIERYV 229          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_SULSO (Proteasome subunit alpha OS=Sulfolobus solfataricus GN=psmA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.036e-33
Identity = 80/197 (40.61%), Postives = 117/197 (59.39%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVN-KANSELSSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 619
            YD  +T +SP G L+QV+YA EAVK+G  AIG++SK+ VV+     KA S L     +K+F +DDH+G + AGL +DGRVL  Y R+  + +   Y+ P+ +  L   +AD  Q+ TQ    RP+GV L++AG+D+    L+   PSG Y  YQA AIG     A  +LE+ ++   +   E+ I  AL A+  TL+
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSSVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLFMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYK--EDLNVEETILLALKALSATLK 204          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.036e-33
Identity = 81/239 (33.89%), Postives = 131/239 (54.81%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFDIAGTEE 745
            YD  +T +SP GRLFQVEYA EAVK+G+ ++G++SK  +VL    +  S+L   +  +KIF++D+HIG A +GL AD R +    R E      TY  P+ V  L  ++ D  Q+ TQ    RP+G  L++ G++ +G  L+   PSG   EY+A AIG+   AA    E+++ +  +      I+ AL A+ E  +G+T   S+    +  A + +  L  + ++  ++   I   +E
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTSLGVKSKEGIVLVVDKRPTSKLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYTQHGGVRPFGTALIIGGVNGRGCRLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSD--DMNLNQAIELALDAVYEATEGKTTPESVEIAVIEAADKKYRRLPDDEIRDHVEELLIRKEKE 245          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA5_MOUSE (Proteasome subunit alpha type-5 OS=Mus musculus GN=Psma5 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.884e-33
Identity = 84/237 (35.44%), Postives = 138/237 (58.23%), Query Frame = 2
Query:   26 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA-----QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 715
            R++YD  V T+SP GRLFQVEYA+EA+K GS AIG+++   V L    +  S L   S  +KI ++D HIG A++GL AD + L    R E  N+ +TY   + V  +   +++ A     +     +  RP+GV LL  G+DEKG  L++  PSG + +  A AIGS S+ A++ L+  +      T ++ IK +L+ +++ ++ E L ++   +A V  G+ FH+  +E ++++I
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYH--KSMTLKEAIKSSLIILKQVME-EKLNATNIELATVQPGQNFHMFTKEELEEVI 238          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA5_HUMAN (Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 6.884e-33
Identity = 84/237 (35.44%), Postives = 138/237 (58.23%), Query Frame = 2
Query:   26 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA-----QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 715
            R++YD  V T+SP GRLFQVEYA+EA+K GS AIG+++   V L    +  S L   S  +KI ++D HIG A++GL AD + L    R E  N+ +TY   + V  +   +++ A     +     +  RP+GV LL  G+DEKG  L++  PSG + +  A AIGS S+ A++ L+  +      T ++ IK +L+ +++ ++ E L ++   +A V  G+ FH+  +E ++++I
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYH--KSMTLKEAIKSSLIILKQVME-EKLNATNIELATVQPGQNFHMFTKEELEEVI 238          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA5_ENTHI (Proteasome subunit alpha type-5 OS=Entamoeba histolytica PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.884e-33
Identity = 88/239 (36.82%), Postives = 137/239 (57.32%), Query Frame = 2
Query:   20 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSE--LSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWK-----RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 715
            M +N+ D  V T+S  GRLFQVEYA EA+K GS  IG+++K  VVL    + +S   L S  +KI ++DDHIG A++GLTAD R L    R E  N+ + Y+ P+ V  +   ++D +    + S K     RP+GV LL+AG+DE G  L+   PSG + E+ A A G+ ++AA++ L  ++ N S + RE  I  AL  +++ ++ +    ++    V    + F I+D   ++ LI
Sbjct:    3 MTKNENDHGVNTFSSEGRLFQVEYATEAMKLGSTVIGIQTKEGVVLAVEKRISSPLMLGSSIEKIIEIDDHIGAAVSGLTADARTLIDNARLEAQNHRFMYDEPINVEVVAQAISDLSLRFGEGSRKKKVMSRPFGVALLIAGVDETGPRLFQTDPSGMFIEFYAKATGAGTEAAQSILHEKY-NKSMTLREAEIL-ALSTLKQVMEEKLNSKNVEVALVTVEKKKFEIMDTAFIENLI 239          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA5_BOVIN (Proteasome subunit alpha type-5 OS=Bos taurus GN=PSMA5 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.884e-33
Identity = 84/237 (35.44%), Postives = 138/237 (58.23%), Query Frame = 2
Query:   26 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA-----QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 715
            R++YD  V T+SP GRLFQVEYA+EA+K GS AIG+++   V L    +  S L   S  +KI ++D HIG A++GL AD + L    R E  N+ +TY   + V  +   +++ A     +     +  RP+GV LL  G+DEKG  L++  PSG + +  A AIGS S+ A++ L+  +      T ++ IK +L+ +++ ++ E L ++   +A V  G+ FH+  +E ++++I
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYH--KSMTLKEAIKSSLIILKQVME-EKLNATNIELATVQPGQNFHMFTKEELEEVI 238          
The following BLAST results are available for this feature:
BLAST of CX675406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSMA_PYRAB2.366e-3337.07Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSA2A_ARATH2.366e-3337.39Proteasome subunit alpha type-2-A OS=Arabidopsis t... [more]
PSA7B_XENLA3.090e-3335.78Proteasome subunit alpha type-7-B OS=Xenopus laevi... [more]
PSA7A_XENLA3.090e-3335.78Proteasome subunit alpha type-7-A OS=Xenopus laevi... [more]
PSMA_SULSO4.036e-3340.61Proteasome subunit alpha OS=Sulfolobus solfataricu... [more]
PSMA_METTH4.036e-3333.89Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSA5_MOUSE6.884e-3335.44Proteasome subunit alpha type-5 OS=Mus musculus GN... [more]
PSA5_HUMAN6.884e-3335.44Proteasome subunit alpha type-5 OS=Homo sapiens GN... [more]
PSA5_ENTHI6.884e-3336.82Proteasome subunit alpha type-5 OS=Entamoeba histo... [more]
PSA5_BOVIN6.884e-3335.44Proteasome subunit alpha type-5 OS=Bos taurus GN=P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A08-B16-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675406 ID=CX675406; Name=CX675406; organism=Citrus sinensis; type=EST; length=759bp
GAAAGATTAAACCCTAAAAATGTTTAGGAACCAATACGACACCGACGTGA
CAACATGGAGCCCCGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAG
GCCGTCAAGCAAGGCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGT
GGTCTTGGGCTGCGTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGA
AGAAGATCTTCAAGGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTC
ACCGCCGACGGCCGTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAA
CTACAGTTACACTTACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCC
AGCTCGCTGACAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCA
TATGGTGTTGGCCTGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCT
TTATTATAACTGCCCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCA
TTGGGTCCCGATCTCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAG
AACTTTTCAGAATCTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGC
AATAAGGGAAACCTTACAAGGAGAAACACTAAAGAGTTCTATTTGCACAG
TTGCTGTGGTAGGAGCTGGGGAGCCATTTCATATTTTAGATCAAGAAACT
GTACAAAAGTTAATTGATTCATTTGACATTGCTGGCACTGAAGAGGGTCC
TGCTGCTGC
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