CX675406

Overview
NameCX675406
Unique NameCX675406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9880 contig Csv1_Contig9880:201..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_THEVO (Proteasome subunit alpha OS=Thermoplasma volcanium GN=psmA PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 4.462e-32
Identity = 91/230 (39.57%), Postives = 126/230 (54.78%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 715
            YD  +T +SP GRLFQVEYA EAVK+GS A+GL+    V+L    K  S+L      +KI  +DD++    +GL AD RVL  + R        TY S + +  LV ++AD+ Q  TQ    RPYGV L+ AG+D+ G  L+   P+G   EY+A AIGS   A  ++LE+ + E  SE     L   AL A  E  +GE LK+    +A +  G  + I   E V+K +
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGLKFSNGVLLISDKKIRSKLIEQNSLEKIQLIDDYVAAVTSGLVADARVLIDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEKEYKEGLSEKEAVTLGIKALKASLE--EGEELKAP--EIASITVGSKYRIYGAEEVKKFL 233          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA7L_HUMAN (Proteasome subunit alpha type-7-like OS=Homo sapiens GN=PSMA8 PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 4.462e-32
Identity = 82/244 (33.61%), Postives = 137/244 (56.15%), Query Frame = 2
Query:   29 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIA------GLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKG-AHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ--GETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFD 727
            ++YD  +T +SP G LFQVEYA EAVK+GS A+G+R    VVLG   K+ ++L   +  +KI  +DDH+ +A A      GLTAD RV+    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D+ G + LY   PSG Y  ++A AIG  ++  + +LE+ +   + ++  + IK A+ A+ E +Q  G+ ++     +A++   +P  +   + V+  +   +
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDSEAIKLAIKALLEVVQSGGKNIE-----LAIIRRNQPLKMFSAKEVELYVTEIE 241          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA72_DROME (Proteasome subunit alpha type-7-1A OS=Drosophila melanogaster GN=Pros28.1A PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 4.462e-32
Identity = 79/232 (34.05%), Postives = 132/232 (56.90%), Query Frame = 2
Query:   29 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKG-AHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 715
            ++Y   +T +SP G L QVEYA EAV++GS A+G+R    VVLG    + SE+   +  +KI  +D H+ +A AGLTAD R+L    + EC ++   +E+ + +  +   LA   Q  TQ + +RP+G+  L+ G+D  G A L++  PSG + EY+A A G  +   + + E+ + +   +T+ D IK A+ A+ E  Q   ++     VAV+  G+P  +LD   + +++
Sbjct:    3 SRYGRALTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKSSVSEMQEDRTVRKISMLDRHVALAFAGLTADARILINRGQVECQSHRLNFENQVTLEYITRYLAQLKQKYTQCNGRRPFGISCLIGGIDADGSARLFHTEPSGIFHEYKATATGRWANTVREFFEKAYSDHEVTTKCDAIKLAMRALLEVTQMSQMR---LEVAVLENGKPMKMLDSVVISEIV 231          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.462e-32
Identity = 84/214 (39.25%), Postives = 124/214 (57.94%), Query Frame = 2
Query:   29 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSEC-INYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 661
            ++Y   +TT+SP G+L Q+EYA+ AV  G  ++G+++   VVL    K  SEL+  +  +K+  +   IG+  +G+  D RVL    R      Y   Y    P   LV ++A   Q  TQ    RP+GV LLVAG+DEKG  LY   PSG YF ++A AIG  S AAKT+LE+R+ +  E   +D +  A++A++ET +GE  + +I  +AVV
Sbjct:    3 DKYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLEKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGGVRPFGVSLLVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYND--ELELDDAVHTAILALKETFEGELTEDNI-EIAVV 213          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.828e-32
Identity = 86/231 (37.23%), Postives = 126/231 (54.55%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLID 718
            YD  +T +SP GRL+QVEYA EAV++G+ AIG+  K  VVL    +  S+L   +  +KIF++DDH+  A +GL AD RVL    R E   Y  TY   + +  L  ++ D  Q  TQ    RP+GV LL+AG+D+  A L+   PSG   EY+A AIGS        LE+ + ++ +     +L   AL    E ++ E +   +C + V  A   F  +  E ++KLI+
Sbjct:    9 YDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANEDIKPENV--DVCIITVKDA--QFKKIPVEEIKKLIE 235          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA5_RAT (Proteasome subunit alpha type-5 OS=Rattus norvegicus GN=Psma5 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.828e-32
Identity = 83/237 (35.02%), Postives = 137/237 (57.81%), Query Frame = 2
Query:   26 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA-----QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 715
            R++YD  V T+SP GRLFQVEYA+E  K GS AIG+++   V L    +  S L   S  +KI ++D HIG A++GL AD + L    R E  N+ +TY   + V  +   +++ A     +     +  RP+GV LL  G+DEKG  L++  PSG + +  A AIGS S+ A++ L+  +     +T ++ IK +L+ +++ ++ E L ++   +A V  G+ FH+  +E ++++I
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYAIEGHKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYH--KSTTLKEAIKSSLIILKQVME-EKLNATNIELATVQPGQNFHMFTKEELEEVI 238          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 7.611e-32
Identity = 82/230 (35.65%), Postives = 131/230 (56.96%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQ-GSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNC-PSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEP-FHILDQETVQK 709
            YD  +T +SP GRLFQVEYA +AVK  G  +IG+R K  V +    K   +L   S    +F +  +IG+   G+TAD R L +  R++   + +TY   +PV  L   +ADK+QV TQ ++ RP GV  +V G+DE+   L Y C P+G+++ ++A + G + Q A  +LE++ +     T ++ ++ A+ A++  LQ E  K++   V VV A  P F  L  E +++
Sbjct:    9 YDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTHLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETVQTAISALQSVLQ-EDFKATEIEVGVVRAENPEFRALTTEEIEE 237          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.940e-32
Identity = 85/231 (36.80%), Postives = 124/231 (53.68%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLID 718
            YD  +T +SP GRLFQVEYA EAVK+GS A+G++ K  V L    K  S L   +  +KI  +DD +    +GL AD RVL  + R        TY S + +  LV ++AD+ Q  TQ    RPYGV ++ AGLD  G  L+   P+G   EY+  +IG+       YLE+ + EN SE   ++ I+  + A++  +  E+       +A +  GE FH+   E V K ++
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGIKFKDGVALISEKKVRSRLVEKTSLEKIQLIDDRVAAVTSGLVADARVLIDFARISDQQEKVTYGSLMNIENLVKRVADQMQQYTQYGGVRPYGVSIIFAGLDSIGPRLFDCDPAGTINEYKCVSIGAGKDQVTAYLEKEYKENLSE---DEAIRMGIAALKSAVADESSMKE-PEIASIKMGETFHVFTSEEVSKYLN 234          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA7_CICAR (Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.940e-32
Identity = 79/212 (37.26%), Postives = 125/212 (58.96%), Query Frame = 2
Query:   32 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD--EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ--GETLKSSICT 649
            +YD  +T +SP G LFQVEYA+EAV++G+AA+G+R   +VVLG   K+ ++L   +  +KI  +DDHI +A AGL AD RVL    R EC ++  T E P+ V  +   +A   Q  TQ    RP+G+  L+ G D       LY   PSG +  ++A A G  S + + +LE+   NF E++ ++ +K A+ A+ E ++  G+ ++ ++ T
Sbjct:    3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDNVVLGVEKKSTAKLQDTRSVRKIVNLDDHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGTFSAWKANATGRNSNSIREFLEK---NFKETSGQETVKLAIRALLEVVESGGKNIEVAVMT 211          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA5_YEAST (Proteasome component PUP2 OS=Saccharomyces cerevisiae GN=PUP2 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 9.940e-32
Identity = 87/251 (34.66%), Postives = 135/251 (53.78%), Query Frame = 2
Query:   26 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA------QVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFDIAGTEEGP 751
            R++YD  V+T+SP GRLFQVEY++EA+K GS AIG+ +K  VVLG   +A S L  S   +KI ++D HIG A++GLTAD R +  + R+  + ++  Y+  + V  L   + D A          +R   RP+GV LL+AG D + G  L++  PSG ++ Y A AIGS S+ A+  L   + +       +L+   ++ I + +  E L  +   ++ +   + F I D E   +LI         E P
Sbjct:    5 RSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELL---VLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELIKELKEKEAAESP 252          
The following BLAST results are available for this feature:
BLAST of CX675406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSMA_THEVO4.462e-3239.57Proteasome subunit alpha OS=Thermoplasma volcanium... [more]
PSA7L_HUMAN4.462e-3233.61Proteasome subunit alpha type-7-like OS=Homo sapie... [more]
PSA72_DROME4.462e-3234.05Proteasome subunit alpha type-7-1A OS=Drosophila m... [more]
PSA2_SCHPO4.462e-3239.25Probable proteasome subunit alpha type-2 OS=Schizo... [more]
PSMA_METJA5.828e-3237.23Proteasome subunit alpha OS=Methanocaldococcus jan... [more]
PSA5_RAT5.828e-3235.02Proteasome subunit alpha type-5 OS=Rattus norvegic... [more]
PSA6A_ARATH7.611e-3235.65Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSMA_PICTO9.940e-3236.80Proteasome subunit alpha OS=Picrophilus torridus G... [more]
PSA7_CICAR9.940e-3237.26Proteasome subunit alpha type-7 OS=Cicer arietinum... [more]
PSA5_YEAST9.940e-3234.66Proteasome component PUP2 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A08-B16-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675406 ID=CX675406; Name=CX675406; organism=Citrus sinensis; type=EST; length=759bp
GAAAGATTAAACCCTAAAAATGTTTAGGAACCAATACGACACCGACGTGA
CAACATGGAGCCCCGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAG
GCCGTCAAGCAAGGCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGT
GGTCTTGGGCTGCGTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGA
AGAAGATCTTCAAGGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTC
ACCGCCGACGGCCGTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAA
CTACAGTTACACTTACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCC
AGCTCGCTGACAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCA
TATGGTGTTGGCCTGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCT
TTATTATAACTGCCCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCA
TTGGGTCCCGATCTCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAG
AACTTTTCAGAATCTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGC
AATAAGGGAAACCTTACAAGGAGAAACACTAAAGAGTTCTATTTGCACAG
TTGCTGTGGTAGGAGCTGGGGAGCCATTTCATATTTTAGATCAAGAAACT
GTACAAAAGTTAATTGATTCATTTGACATTGCTGGCACTGAAGAGGGTCC
TGCTGCTGC
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