CX675406

Overview
NameCX675406
Unique NameCX675406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9880 contig Csv1_Contig9880:201..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA2_NEUCR (Probable proteasome subunit alpha type-2 OS=Neurospora crassa GN=B14D6.510 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.298e-31
Identity = 86/229 (37.55%), Postives = 128/229 (55.90%), Query Frame = 2
Query:   29 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLTADGRVL-SRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQ 706
            ++Y   +TT+SP+G+L Q+EYA+ AV QG  A+G+++   +VL    K++S L+  S   KI  +  +IG+  +G+  D RVL  R  +     Y   Y    P   LV  +A   Q  TQ    RPYGV LL+AG DE G  LY   PSG+YF ++A AIG  +  AKT+LE+R+    E   ED +  AL+ ++ET++GE +      + +VG     H+L  E V+
Sbjct:    3 DRYSFSLTTFSPSGKLVQIEYALNAVNQGVTALGIKATNGIVLATEKKSSSPLADPSSLSKISLITPNIGMVYSGMGPDYRVLVDRARKVSHTGYKRIYNEYPPTRILVQDVARVMQEATQSGGVRPYGVSLLIAGWDEGGPMLYQVDPSGSYFPWKATAIGKNATTAKTFLEKRYTEGLE--LEDAVHIALLTLKETIEGE-MNGDTIEIGIVGPPAD-HLLGVEGVE 227          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_METS5 (Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=psmA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.696e-31
Identity = 79/202 (39.11%), Postives = 119/202 (58.91%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVV-LGCVNKANSELSSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ-GETL 631
            YD  +T +SP G L+QV+YA EAVK+G   +G+++K  VV LG   KA+  L     +K+F +DDH+G + AGL +DGR+L  Y R+  + +   Y+ P+ +  L   ++D  Q+ TQ    RP+GV L+V G+D     L+   PSG +  YQA AIG     A  YLE+ ++   + + E+ I  AL A++ TL+ GE L
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKNAVVILGEKKKASQLLDVDSIEKVFLLDDHVGCSFAGLASDGRILIDYARNSSLQHRLVYDEPISIDYLTKLISDVKQMYTQHGGVRPFGVALIVGGVDRGVTKLFMTEPSGQFMPYQAVAIGQGGYNATDYLEKNYK--EDLSVEETILLALNALKVTLKPGEKL 209          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.696e-31
Identity = 82/230 (35.65%), Postives = 132/230 (57.39%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQ-GSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEP-FHILDQETVQK 709
            YD  +T +SP GRLFQVEYA +AVK  G  +IG+R K  V +    K   +L   +    +F +  ++G+   G+TAD R L +  R+E   + + Y   +PV  L   +ADK+QV TQ ++ RP GV  ++ G+D EKG  L+   P+G++F ++A + GS+ Q A  +LE++ +N    + E+ ++ A+ A++  LQ E  K+S   V VV   +P F +L  E + +
Sbjct:    9 YDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVYTQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNDPAFSYEETVQTAISALQSVLQ-EDFKASEIEVGVVKKEDPIFRVLTTEEIDE 237          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA5_DICDI (Proteasome subunit alpha type-5 OS=Dictyostelium discoideum GN=psmA5 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.696e-31
Identity = 81/242 (33.47%), Postives = 135/242 (55.79%), Query Frame = 2
Query:   26 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA------QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFD 727
            R++YD  V T+SP GRLFQVEYA+EA+K G   IG++ +  VVL    +  S L   S  +K+ ++D H+  A++GL AD R +  + R E  N+ + Y  P+ V   V  + D A      +   +    RP+GV LL+AG+DEKG  LYY+ PSG + ++ A AIG+ S+ A+T L+ ++      T  +  K AL  +++ ++     +++    +  A + F I ++E +  +I + +
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYALEAIKLG---IGVQCEEGVVLAVEKRLTSPLLEPSSIQKVVEIDYHLICALSGLVADARTIIDHARIETQNHRFNYNEPMGVESCVQSICDLALRFGENRNSGEERMSRPFGVALLIAGIDEKGPSLYYSDPSGTFTQFHAKAIGAGSEGAQTTLQEKYS--KTLTIAECQKLALTTLKQVMEEAITTTNVELAVITKADQKFKIYNKEELATVIQTLE 241          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.214e-31
Identity = 84/239 (35.15%), Postives = 128/239 (53.56%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFDIAGTEE 745
            YD  +T +SP GRL+QVEYA EAVK+G+A+IG+R+   VVL    ++ S L   +  +KI K DDHIG+A AG  AD R L  + R +       Y  P+ +  L  ++ D  Q  TQ    RP+GV LL+ G++     LY   PSG  +E++A +IG+     + +LE  F +  + T ++ I+ AL AI  T    T    +    V    E F  L  + ++  +++ D+  TE+
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLAADKRSRSPLMEPTSVEKIHKADDHIGIASAGHVADARQLIDFARHQSQVNRLRYGEPIGIETLTKEVTDHIQQYTQVGGARPFGVALLIGGVENGTPRLYETDPSGTPYEWKAVSIGADRGDHQEHLEENFRD--DLTLDEGIELALEAIASTSDEGTAPDGVDVATVSAETERFVELSNDEIESYLEANDLLATED 246          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA7_CHICK (Proteasome subunit alpha type-7 OS=Gallus gallus GN=PSMA7 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.214e-31
Identity = 84/233 (36.05%), Postives = 132/233 (56.65%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ--GETLKSSICTVAVVGAGEPFHIL-DQETVQKLI 715
            YD  +T +SP G LFQVEYA EAVK+GS A+G+R K  VVLG   K+ ++L   +  +KI  +DD++ +A AGLTAD R++    R EC ++  T E P+ V  +   +A   Q  TQ   +RP+G+  L+ G D  G   LY   PSG Y  ++A AIG  +++ +   E+ + + +  T +  IK  + A+ E +Q  G+ ++     +AV+   +P  IL   E ++K +
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSKRRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVRVEFEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIE-----LAVMRRDQPLKILTSPEEIEKYV 230          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA4_YEAST (Proteasome component Y13 OS=Saccharomyces cerevisiae GN=PRE9 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.214e-31
Identity = 84/241 (34.85%), Postives = 129/241 (53.53%), Query Frame = 2
Query:   20 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFDI 730
            M   +YD+  T +SP GRL+QVEYA+E++     AIG+ +   +VL    K  S L    +  +K++K++D I VA+AGLTAD  +L    R    NY  TY   +PV  LV +L+D  Q  TQ    RP+GV  + AG D++ G  LY + PSGNY  ++A ++G+ + AA+T L+  +++  +   +D I+ AL  + +T     L       A +  G      D E  QK+    +I
Sbjct:    1 MGSRRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKD--DMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGAN----DGEVYQKIFKPQEI 235          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.214e-31
Identity = 76/210 (36.19%), Postives = 118/210 (56.19%), Query Frame = 2
Query:   20 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 643
            M    Y   +TT+SP+G+L Q+EYA+ AV  G+ ++G+++   VVL    K  S L   Q   K+  +  HIG+  +G+  D RVL R  R     Y   Y+ P+P  +LV ++A   Q  TQ    RP+GV LL+AG DE   +L+ + PSG YF ++A A+G      KT+LE+R+    E   ED I  A++ ++E+ +G+  + +I
Sbjct:    1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKATNGVVLATEKKQKSILYDEQSAHKVEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLE--LEDAIHTAILTLKESFEGQMTEDNI 208          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA7_SOLLC (Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.892e-31
Identity = 79/212 (37.26%), Postives = 123/212 (58.02%), Query Frame = 2
Query:   32 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA--HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ--GETLKSSICT 649
            +YD  +T +SP G LFQVEYAMEAV++G+AA+G+R    VVLG   K+  +L   +  +KI  +DDHI +A AGL AD RVL    R EC ++  T E P+ V  +   +A   Q  TQ    RP+G+  L+ G D       LY   PSG +  ++A A G  S + + +LE+   N+ E++ ++ +K A+ A+ E ++  G+ ++ ++ T
Sbjct:    3 RYDRAITVFSPDGHLFQVEYAMEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSVRKIVNLDDHIALACAGLKADARVLVNKARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIIGFDPHTGVPSLYQTDPSGTFSAWKANATGRNSNSTREFLEK---NYKETSGQETVKLAIRALLEVVESGGKNIEVAVMT 211          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.443e-31
Identity = 81/230 (35.22%), Postives = 130/230 (56.52%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQ-GSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGL-DEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEP-FHILDQETVQK 709
            Y+  +T +SP GRLFQVEYA +AVK  G  +IG+R K  + +    K   +L  +     +F +  ++G+   G+TAD R L +  R+E   + +TY   +PV  L   +ADK+QV TQ ++ RP GV  +V G+ DE G  LY   P+G+YF ++A + G + Q A  +LE++ +N    T E+ ++ A+ A++  LQ E  K++   V VV    P F +L  + + +
Sbjct:    9 YNRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKLLDNTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQSVLQ-EDFKATEIEVGVVRKDNPEFRVLTTDEIDE 237          
The following BLAST results are available for this feature:
BLAST of CX675406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA2_NEUCR1.298e-3137.55Probable proteasome subunit alpha type-2 OS=Neuros... [more]
PSMA_METS51.696e-3139.11Proteasome subunit alpha OS=Metallosphaera sedula ... [more]
PSA6_TOBAC1.696e-3135.65Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]
PSA5_DICDI1.696e-3133.47Proteasome subunit alpha type-5 OS=Dictyostelium d... [more]
PSMA1_HALVO2.214e-3135.15Proteasome subunit alpha 1 OS=Halobacterium volcan... [more]
PSA7_CHICK2.214e-3136.05Proteasome subunit alpha type-7 OS=Gallus gallus G... [more]
PSA4_YEAST2.214e-3134.85Proteasome component Y13 OS=Saccharomyces cerevisi... [more]
PSA2_XENLA2.214e-3136.19Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSA7_SOLLC2.892e-3137.26Proteasome subunit alpha type-7 OS=Solanum lycoper... [more]
PSA6_SOYBN6.443e-3135.22Proteasome subunit alpha type-6 OS=Glycine max GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A08-B16-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675406 ID=CX675406; Name=CX675406; organism=Citrus sinensis; type=EST; length=759bp
GAAAGATTAAACCCTAAAAATGTTTAGGAACCAATACGACACCGACGTGA
CAACATGGAGCCCCGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAG
GCCGTCAAGCAAGGCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGT
GGTCTTGGGCTGCGTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGA
AGAAGATCTTCAAGGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTC
ACCGCCGACGGCCGTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAA
CTACAGTTACACTTACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCC
AGCTCGCTGACAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCA
TATGGTGTTGGCCTGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCT
TTATTATAACTGCCCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCA
TTGGGTCCCGATCTCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAG
AACTTTTCAGAATCTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGC
AATAAGGGAAACCTTACAAGGAGAAACACTAAAGAGTTCTATTTGCACAG
TTGCTGTGGTAGGAGCTGGGGAGCCATTTCATATTTTAGATCAAGAAACT
GTACAAAAGTTAATTGATTCATTTGACATTGCTGGCACTGAAGAGGGTCC
TGCTGCTGC
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