CX675406

Overview
NameCX675406
Unique NameCX675406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9880 contig Csv1_Contig9880:201..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.443e-31
Identity = 77/235 (32.77%), Postives = 131/235 (55.74%), Query Frame = 2
Query:   29 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFD 727
            +QY   +TT+SP+G+L Q+E+A+ AV  G  ++G+++   VV+    K  S L   +  +KI  +  +IGV  +G+  D RVL R  R +   Y   Y+  +PV +LV + A   Q  TQ    RP+GV LL+AG D+ G  LY   PSG+YF ++A A+G     AKT+LE+R+    E   +D I  A++ ++E  +G+   ++I  + ++ +   F +L    ++  ++  +
Sbjct:    4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME--LDDAIHTAILTLKEGYEGQISANNI-EIGIIRSDREFKVLSPAEIKDFLEEVE 235          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.443e-31
Identity = 77/235 (32.77%), Postives = 131/235 (55.74%), Query Frame = 2
Query:   29 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFD 727
            +QY   +TT+SP+G+L Q+E+A+ AV  G  ++G+++   VV+    K  S L   +  +KI  +  +IGV  +G+  D RVL R  R +   Y   Y+  +PV +LV + A   Q  TQ    RP+GV LL+AG D+ G  LY   PSG+YF ++A A+G     AKT+LE+R+    E   +D I  A++ ++E  +G+   ++I  + ++ +   F +L    ++  ++  +
Sbjct:    4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME--LDDAIHTAILTLKEGYEGQISANNI-EIGIIRSDREFKVLSPAEIKDFLEEVE 235          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.415e-31
Identity = 84/230 (36.52%), Postives = 125/230 (54.35%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 715
            YD  +T +SP GRL+QVEYA EAV++G+ A+G++ K  VVL    +  S+L   S  +KIF++DDHI  A +GL AD RVL    R E      +Y   + V  L  ++ D  Q  TQ    RP+G+ LL+ G+D   A L+   PSG   EY+A AIGS    A   LE ++ EN + S   +L   AL    E L+ E +  +I    +  +G+    +  + ++K++
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVSEGMELALYALSKTTEELKPENIDMAI----IKDSGKLVEKISVDEIEKIV 235          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA7_RAT (Proteasome subunit alpha type-7 OS=Rattus norvegicus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.415e-31
Identity = 82/238 (34.45%), Postives = 135/238 (56.72%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVA------IAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ--GETLKSSICTVAVVGAGEPFHILDQETVQKLI 715
            YD  +T +SP G LFQVEYA EAVK+GS A+G+R +  VVLG   K+ ++L   +  +KI  +DD++ +A      ++GLTAD R++    R EC ++  T   P+ V  +   +A   Q  TQ + +RP+G+  L+ G D  G   LY   PSG Y  ++A AIG  +++ + +LE+ + + +  T +  IK  + A+ E +Q  G+ ++     +AV+   +P  IL  E ++K +
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAVVASVSGLTADARIVINRARVECQSHRLTVGDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQSGGKNIE-----LAVMRRDQPLKILSPEEIEKYV 235          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.099e-30
Identity = 81/230 (35.22%), Postives = 129/230 (56.09%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQ-GSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNC-PSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEP-FHILDQETVQK 709
            YD  +T +SP GRLFQVEYA +AVK  G  +IG+R K  V +    K   +L   S    +F V  ++G+   G+TAD R L +  R+E   + + Y   +P   L   +ADK+QV TQ ++ RP GV  +V G+DE+   L Y C P+G+++ ++A + G + Q A  +LE++ +     T ++ ++ A+ A++  LQ E  K++   V VV A +P F  L  E + +
Sbjct:    9 YDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSHLFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAYMRPLGVVAMVLGIDEERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPAFTYDETVQTAISALQSVLQ-EDFKATEIEVGVVRADDPLFRSLRTEEIDE 237          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_METVS (Proteasome subunit alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.435e-30
Identity = 90/241 (37.34%), Postives = 127/241 (52.70%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRETLQGETLKSSIC--TVAVVGAGEPFHILDQETVQKLIDSFDIAGTE 742
            YD  +T +SP GRL+QVEYA EAV++G+ A+G++ K  VVL    +  S+L   S  +KIF++DDHI  A +GL AD RVL    R E      +Y   + V  L  ++ D  Q  T     RP+G+ LL+ G+D   A L+   PSG   EY+A AIGS    A   LE ++ EN S S   +L   AL    E L+ E +  +I   T  +V     F I  ++ V+K+ D   +   E
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARVEAQVNRISYGEAITVEALAKKICDIKQAYTHHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPVAMEILEEKYDENMSVSEGMELAIYALSKTTEELKPENIDMAIVKDTGKLVEKITVFEI--EKIVKKVYDKIKVENEE 248          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.435e-30
Identity = 84/230 (36.52%), Postives = 125/230 (54.35%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 715
            YD  +T +SP GRL+QVEYA EAV++G+ A+G++ K  VVL    +  S+L   S  +KIF++DDHI  A +GL AD RVL    R E      +Y   + V  L  ++ D  Q  TQ    RP+G+ LL+ G+D   A L+   PSG   EY+A AIGS    A   LE ++ EN + +   +L   AL    E L+ E +  +I    V  +G+    +  + ++K++
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMTVNEGMELALYALSKTTEELKPENIDMAI----VKDSGKLVEKISVDEIEKIV 235          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA2_HALMA (Proteasome subunit alpha 2 OS=Haloarcula marismortui GN=psmA2 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.435e-30
Identity = 83/239 (34.73%), Postives = 128/239 (53.56%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSES-TREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFDIAGTE 742
            YD  +T +SP GRL+QVEYA EAVK+G+A++G+R++  VV+     A S L      +KI ++D H+GVA AG  AD R L    R +       Y+ P  V  L  ++ D  Q  TQ    RP+GV LLVAG+++    L+   PSG  +E+QA AIG   +  +T+LE   E ++E    E  I+ AL A+    +     + +    +    E F  L ++ + + ++ F++ G E
Sbjct:    9 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGVRTEDGVVIAADRHARSPLIERDSIEKIHEIDSHVGVASAGHVADARQLIDVARRQSQVNRLRYDEPASVESLTKEITDYIQQYTQTGGARPFGVALLVAGIEDGEPRLFETDPSGTPYEWQAVAIGGSREDIQTFLE---EEYAEGMDLEGGIELALRALASVNEDGLDATGVDIATIDVESEQFEKLAEDDIAERLEEFELGGEE 244          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.875e-30
Identity = 83/232 (35.78%), Postives = 122/232 (52.59%), Query Frame = 2
Query:   35 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSF 724
            YD  +T +SP GRL+QVEYA EAVK+G+ A+G+++   VVL    + +S+L  SS  +KIFK+D+HIGVA +GL  D R L    R EC     +Y+  + V  L  +L D  Q  TQ    RPYG  LL+AG+ +  + L+   PSG   EY+A  IG    AA    E  +   ++   +D I   L A+    +G+    ++    V  +   F  + +E V   +  F
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKAHDGVVLIVDKRVSSKLLESSSIEKIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAKKLCDHMQTLTQYGGIRPYGTALLIAGVSDGESRLFETDPSGTLLEYKATGIGIGRPAAMKVFEEEYT--ADLALKDAILLGLKALHSATEGKFDVDTVEMGIVESSTAQFKKMTKEEVASYVGQF 238          
BLAST of CX675406 vs. ExPASy Swiss-Prot
Match: PSA71_DROVI (Proteasome subunit alpha type-7-1 OS=Drosophila virilis GN=Pros28.1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.875e-30
Identity = 82/242 (33.88%), Postives = 135/242 (55.79%), Query Frame = 2
Query:   29 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFDIAGTEE 745
            ++YD  VT +SP GRL QVEYA EAV++GS A+G+R    VVLG   K+ ++L   +  +KI  V DH+ +A AGLT D R+L    + EC ++    E P+ +  +   +A   Q  TQ + +RP+G+  L+ G D  G+ +L+   PSG ++EY+A A G  ++  + + E+++     ST    +K A+ A+ E  Q          VA++  G+P  +LD++ + + +D  +    EE
Sbjct:    3 SRYDRAVTIFSPDGRLLQVEYAQEAVRKGSTAVGVRGGNCVVLGVEKKSVAKLQEDRTVRKIC-VLDHVVMAFAGLT-DARILINRAQVECQSHRLNVEDPVTLEYITRYIAQLKQKYTQSNGRRPFGISCLIGGFDADGSPYLFQTEPSGIFYEYKANATGCSAKTVREFFEKQYREEEVSTERGAVKLAIRALLEVAQS---GQHNLEVAIMENGKPLKMLDRKVILEYLDIIEKEKEEE 239          
The following BLAST results are available for this feature:
BLAST of CX675406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA2_ORYSJ6.443e-3132.77Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_ORYSI6.443e-3132.77Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSMA_METMP8.415e-3136.52Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSA7_RAT8.415e-3134.45Proteasome subunit alpha type-7 OS=Rattus norvegic... [more]
PSA6B_ARATH1.099e-3035.22Proteasome subunit alpha type-6-B OS=Arabidopsis t... [more]
PSMA_METVS1.435e-3037.34Proteasome subunit alpha OS=Methanococcus vannieli... [more]
PSMA_METM71.435e-3036.52Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA2_HALMA1.435e-3034.73Proteasome subunit alpha 2 OS=Haloarcula marismort... [more]
PSMA_METB61.875e-3035.78Proteasome subunit alpha OS=Methanoregula boonei (... [more]
PSA71_DROVI1.875e-3033.88Proteasome subunit alpha type-7-1 OS=Drosophila vi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A08-B16-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675406 ID=CX675406; Name=CX675406; organism=Citrus sinensis; type=EST; length=759bp
GAAAGATTAAACCCTAAAAATGTTTAGGAACCAATACGACACCGACGTGA
CAACATGGAGCCCCGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAG
GCCGTCAAGCAAGGCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGT
GGTCTTGGGCTGCGTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGA
AGAAGATCTTCAAGGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTC
ACCGCCGACGGCCGTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAA
CTACAGTTACACTTACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCC
AGCTCGCTGACAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCA
TATGGTGTTGGCCTGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCT
TTATTATAACTGCCCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCA
TTGGGTCCCGATCTCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAG
AACTTTTCAGAATCTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGC
AATAAGGGAAACCTTACAAGGAGAAACACTAAAGAGTTCTATTTGCACAG
TTGCTGTGGTAGGAGCTGGGGAGCCATTTCATATTTTAGATCAAGAAACT
GTACAAAAGTTAATTGATTCATTTGACATTGCTGGCACTGAAGAGGGTCC
TGCTGCTGC
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