CX675404

Overview
NameCX675404
Unique NameCX675404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: REHY_TORRU (Probable 1-Cys peroxiredoxin OS=Tortula ruralis PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.224e-72
Identity = 127/206 (61.65%), Postives = 159/206 (77.18%), Query Frame = 2
Query:   23 GLTIGDSVPNLQVQTNQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXXDQAKETFPQGFETVDLP 640
            G  +GD VP++Q  +  G+ K+ D+  D WTIIFSHPGD+ PVCTTELGK+AAY PEF+KR VKLLGLS D V+ H  WIKDIE+YTP   V YPI+ADP+R+I   LNM+DPDEKD++GK L SRALHI+GPD ++KLS LYP +TGRN DEV+R LDSLQ A KHK+ATPANW++G+          ++AK+ FPQG+ETV+LP
Sbjct:    4 GWALGDLVPDIQADSTMGHIKVRDYCKDGWTIIFSHPGDYPPVCTTELGKIAAYNPEFEKRGVKLLGLSTDTVEDHQGWIKDIESYTPDAPVLYPILADPDRKITVALNMMDPDEKDANGKPLASRALHIIGPDCRLKLSLLYPGTTGRNFDEVLRVLDSLQLASKHKIATPANWQKGEPVVISPSVSDEKAKQMFPQGWETVNLP 209          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: PRDX6_CHICK (Peroxiredoxin-6 OS=Gallus gallus GN=PRDX6 PE=2 SV=3)

HSP 1 Score: 244.588 bits (623), Expect = 3.571e-64
Identity = 117/220 (53.18%), Postives = 148/220 (67.27%), Query Frame = 2
Query:   17 MPGLTIGDSVPNLQVQTNQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT---PGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXXDQAKETFPQGFETVDLPSKKEYLRFT 667
            MPGL +GD  PN +  T QG  + HDF+GD+W I+FSHP DFTPVCTTELG+ A   PEF KR VK++ LS D V  H  W KDI AY    P  K+ +PIIAD +RE+  +L M+DPDE+D  G  L +R + I GPD ++KLS LYPA+TGRN DE++R +DSLQ     KVATP +WK GD          ++AK+ FP+G  T DLPS K+YLR+T
Sbjct:    1 MPGLLLGDEAPNFEADTTQGGIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFSKRNVKMIALSIDSVPDHLAWSKDINAYNGDQPVEKLPFPIIADKDRELAVKLGMLDPDERDKDGMPLTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVVDSLQLTAYKKVATPVDWKCGDSVMVVPTLPDEEAKKLFPKGVFTKDLPSGKKYLRYT 220          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: PRDX6_BOVIN (Peroxiredoxin-6 OS=Bos taurus GN=PRDX6 PE=1 SV=3)

HSP 1 Score: 229.18 bits (583), Expect = 1.552e-59
Identity = 109/218 (50.00%), Postives = 144/218 (66.06%), Query Frame = 2
Query:   23 GLTIGDSVPNLQVQTNQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT---PGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXXDQAKETFPQGFETVDLPSKKEYLRFT 667
            GL +GD  PN +  T  G  + HD++GD+W I+FSHP DFTPVCTTELG+ A   PEF KR VK++ LS D V+ H  W KDI AY    P  K+ +PII D NR++  QL M+DP EKD  G  + +R + I GPD ++KLS LYPA+TGRN DE++R + SLQ   + +VATP +WK GD          ++AK+ FP+G  T +LPS K+YLR+T
Sbjct:    4 GLLLGDEAPNFEANTTIGRIRFHDYLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPTEKLPFPIIDDKNRDLAIQLGMLDPAEKDEKGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDSVMVLPTIPEEEAKKLFPKGVFTKELPSGKKYLRYT 221          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: PRDX6_RAT (Peroxiredoxin-6 OS=Rattus norvegicus GN=Prdx6 PE=1 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 2.648e-59
Identity = 109/218 (50.00%), Postives = 145/218 (66.51%), Query Frame = 2
Query:   23 GLTIGDSVPNLQVQTNQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT---PGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXXDQAKETFPQGFETVDLPSKKEYLRFT 667
            GL +GD  PN +  T  G+ + HDF+GD+W I+FSHP DFTPVCTTELG+ A   PEF KR VKL+ LS D V+ H  W KDI AY    P  K+ +PII D +R++   L M+DP EKD  G  + +R + I GPD ++KLS LYPA+TGRN DE++R +DSLQ    + VATP +WK+G+          ++AK+ FP+G  T +LPS K+YLR+T
Sbjct:    4 GLLLGDEAPNFEANTTIGHIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHFAWSKDINAYNGAAPTEKLPFPIIDDKDRDLAILLGMLDPAEKDEKGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVVDSLQLTASNPVATPVDWKKGESVMVLPTLPEEEAKQLFPKGVFTKELPSGKKYLRYT 221          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: PRDX6_HUMAN (Peroxiredoxin-6 OS=Homo sapiens GN=PRDX6 PE=1 SV=3)

HSP 1 Score: 228.024 bits (580), Expect = 3.459e-59
Identity = 110/218 (50.46%), Postives = 143/218 (65.60%), Query Frame = 2
Query:   23 GLTIGDSVPNLQVQTNQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT---PGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXXDQAKETFPQGFETVDLPSKKEYLRFT 667
            GL +GD  PN +  T  G  + HDF+GD+W I+FSHP DFTPVCTTELG+ A   PEF KR VKL+ LS D V+ H  W KDI AY    P  K+ +PII D NRE+   L M+DP EKD  G  + +R + + GPD ++KLS LYPA+TGRN DE++R + SLQ   + +VATP +WK GD          ++AK+ FP+G  T +LPS K+YLR+T
Sbjct:    4 GLLLGDVAPNFEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNCEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAKKLFPKGVFTKELPSGKKYLRYT 221          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: PRDX6_PIG (Peroxiredoxin-6 OS=Sus scrofa GN=PRDX6 PE=2 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 1.314e-58
Identity = 108/218 (49.54%), Postives = 143/218 (65.60%), Query Frame = 2
Query:   23 GLTIGDSVPNLQVQTNQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT---PGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXXDQAKETFPQGFETVDLPSKKEYLRFT 667
            GL +GD  PN +  T  G  + HDF+GD+W I+FSHP DFTPVCTTELG+ A   PEF KR VK++ LS D V+ H  W KDI AY    P   + +PII D +R++  QL M+DP EKD  G  + +R + I GPD ++KLS LYPA+TGRN DE++R + SLQ   + +VATP +WK GD          ++AK+ FP+G  T +LPS K+YLR+T
Sbjct:    4 GLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDSVMVLPNIPEEEAKKLFPKGVFTKELPSGKKYLRYT 221          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: PRDX6_MACFA (Peroxiredoxin-6 OS=Macaca fascicularis GN=PRDX6 PE=2 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 1.314e-58
Identity = 108/218 (49.54%), Postives = 142/218 (65.14%), Query Frame = 2
Query:   23 GLTIGDSVPNLQVQTNQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT---PGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXXDQAKETFPQGFETVDLPSKKEYLRFT 667
            GL +GD  PN +  T  G  + HDF+GD+W I+FSHP DFTPVCTTELG+ A   PEF KR VKL+ LS D V+ H  W KD  AY    P  K+ +PII D NR++   L M+DP EKD  G  + +R + + GPD ++KLS LYPA+TGRN DE++R + SLQ   + +VATP +WK GD          ++AK+ FP+G  T +LPS K+YLR+T
Sbjct:    4 GLLLGDEAPNFEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDTNAYNCEEPTEKLPFPIIDDKNRDLAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAKKLFPKGVFTKELPSGKKYLRYT 221          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: PRDX6_PONAB (Peroxiredoxin-6 OS=Pongo abelii GN=PRDX6 PE=2 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 2.928e-58
Identity = 109/218 (50.00%), Postives = 142/218 (65.14%), Query Frame = 2
Query:   23 GLTIGDSVPNLQVQTNQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT---PGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXXDQAKETFPQGFETVDLPSKKEYLRFT 667
            GL +GD  PN +  T  G  + HDF+GD+W I+FSHP DFTPVCTTELG+ A   PEF KR VKL+ LS D V+ H  W KDI AY    P  K+ +PII D NRE+   L M+DP EKD  G    +R + + GPD ++KLS LYPA+TGRN DE++R + SLQ   + +VATP +WK GD          ++AK+ FP+G  T +LPS ++YLR+T
Sbjct:    4 GLLLGDVAPNFEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNCEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPGTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAKKLFPKGVFTKELPSGRKYLRYT 221          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: PRDX6_MOUSE (Peroxiredoxin-6 OS=Mus musculus GN=Prdx6 PE=1 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 2.928e-58
Identity = 109/218 (50.00%), Postives = 143/218 (65.60%), Query Frame = 2
Query:   23 GLTIGDSVPNLQVQTNQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY---TPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXXDQAKETFPQGFETVDLPSKKEYLRFT 667
            GL +GD  PN +  T  G  + HDF+GD+W I+FSHP DFTPVCTTELG+ A   PEF KR VKL+ LS D V+ H  W KDI AY   TP  K+ +PII D  R++   L M+DP EKD +   + +R + I GPD ++KLS LYPA+TGRN DE++R +DSLQ      VATP +WK+G+          ++AK+ FP+G  T +LPS K+YLR+T
Sbjct:    4 GLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNGETPTEKLPFPIIDDKGRDLAILLGMLDPVEKDDNNMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVVDSLQLTGTKPVATPVDWKKGESVMVVPTLSEEEAKQCFPKGVFTKELPSGKKYLRYT 221          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: 1CPX_DIRIM (1-Cys peroxiredoxin OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.168e-55
Identity = 105/226 (46.46%), Postives = 144/226 (63.72%), Query Frame = 2
Query:   23 GLTIGDSVPNLQVQTNQGNF-KLHDFIG-DNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTP-----------GCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXXDQAKETFPQGFETVDLPSKKEYLR 661
            G+ +GD  P+ + +TN+G     +D+IG D+W I+FSHP DFTPVCTTEL ++    PEF+KR VKL+GLSCD  +SH +W+ DI A              G K+ +PIIAD NR +  +L M+DPDE+D +G  L +R + I+GP+  +KLS LYPA+TGRN DE++R +DSLQ      VATP +WK GD           +AK+ F +   T++LPS K YLR
Sbjct:    4 GILLGDKFPDFRAETNEGFIPSFYDWIGKDSWAILFSHPRDFTPVCTTELARLVQLAPEFNKRNVKLIGLSCDSAESHRKWVDDIMAVCKMKCNDGDTCCSGNKLPFPIIADENRFLATELGMMDPDERDENGNALTARCVFIIGPEKTLKLSILYPATTGRNFDEILRVVDSLQLTAVKLVATPVDWKDGDDCVVLPTIDDTEAKKLFGEKINTIELPSGKHYLR 229          
The following BLAST results are available for this feature:
BLAST of CX675404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
REHY_TORRU1.224e-7261.65Probable 1-Cys peroxiredoxin OS=Tortula ruralis PE... [more]
PRDX6_CHICK3.571e-6453.18Peroxiredoxin-6 OS=Gallus gallus GN=PRDX6 PE=2 SV=... [more]
PRDX6_BOVIN1.552e-5950.00Peroxiredoxin-6 OS=Bos taurus GN=PRDX6 PE=1 SV=3[more]
PRDX6_RAT2.648e-5950.00Peroxiredoxin-6 OS=Rattus norvegicus GN=Prdx6 PE=1... [more]
PRDX6_HUMAN3.459e-5950.46Peroxiredoxin-6 OS=Homo sapiens GN=PRDX6 PE=1 SV=3[more]
PRDX6_PIG1.314e-5849.54Peroxiredoxin-6 OS=Sus scrofa GN=PRDX6 PE=2 SV=3[more]
PRDX6_MACFA1.314e-5849.54Peroxiredoxin-6 OS=Macaca fascicularis GN=PRDX6 PE... [more]
PRDX6_PONAB2.928e-5850.00Peroxiredoxin-6 OS=Pongo abelii GN=PRDX6 PE=2 SV=3[more]
PRDX6_MOUSE2.928e-5850.00Peroxiredoxin-6 OS=Mus musculus GN=Prdx6 PE=1 SV=3[more]
1CPX_DIRIM5.168e-5546.461-Cys peroxiredoxin OS=Dirofilaria immitis PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A07-B14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675404 ID=CX675404; Name=CX675404; organism=Citrus sinensis; type=EST; length=674bp
TCTCTTTGCTTTCAAAATGCCTGGCCTCACAATTGGAGATTCTGTTCCCA
ACCTTCAAGTCCAAACCAATCAAGGAAACTTTAAGCTTCATGACTTCATC
GGTGATAACTGGACCATTATCTTCTCTCACCCAGGTGATTTCACTCCTGT
GTGCACAACTGAACTTGGCAAGATGGCTGCTTATGTTCCAGAGTTTGATA
AGAGAGAAGTGAAGCTTCTGGGTTTGTCCTGTGATGACGTTAAGTCACAC
AATGAGTGGATCAAAGACATTGAAGCCTACACACCTGGTTGCAAGGTCTC
ATATCCAATCATCGCAGATCCCAATCGAGAGATCATCAAGCAACTCAACA
TGGTGGACCCGGATGAAAAAGATTCATCAGGAAAGCAGCTCCCTTCTCGA
GCCCTTCATATCGTGGGCCCTGATCATCAGGTGAAACTGAGCTTTCTTTA
CCCGGCGTCGACTGGCCGGAACATGGATGAAGTAGTAAGGGCATTGGACT
CTCTGCAGAAGGCACTGAAGCATAAGGTTGCAACGCCTGCAAACTGGAAG
CAGGGAGATCCGGTGGTGATATCACCAAGTGTGTCTAGTGATCAAGCCAA
AGAGACGTTCCCTCAAGGTTTTGAGACTGTGGATCTTCCATCCAAGAAAG
AGTACTTGCGTTTCACCAATGTCT
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