CX675404

Overview
NameCX675404
Unique NameCX675404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: TDXH_PYRAB (Probable peroxiredoxin OS=Pyrococcus abyssi GN=PYRAB10420 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.502e-25
Identity = 65/180 (36.11%), Postives = 101/180 (56.11%), Query Frame = 2
Query:   26 LTIGDSVPNLQVQTNQGNFKLHDFIGDN--WTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 559
            + IG+  P ++V+T  G  KL D       W I+FSHP DFTPVCTTE   M   + EF K  V+ +GLS D V +H +W++ I+    G ++ +PIIAD   E+ ++L M+       SG  + +RA+ IV     ++    YPA  GR+ DE++R + +L+ + ++ VA P  W   +
Sbjct:    2 VVIGEKFPEVEVKTTHGVIKLPDHFTKQGKWFILFSHPADFTPVCTTEFYGMQKRLEEFRKLGVEPIGLSVDQVFAHIKWMEWIKE-NLGVEIEFPIIADDRGELAEKLGMI------PSGATITARAVFIVDDKGIIRAIVYYPAEVGRDWDEILRLVKALKISTENGVALPHKWPNNE 174          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: TDXH_PYRKO (Probable peroxiredoxin OS=Pyrococcus kodakaraensis GN=TK0537 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.267e-25
Identity = 63/180 (35.00%), Postives = 102/180 (56.67%), Query Frame = 2
Query:   26 LTIGDSVPNLQVQTNQGNFKLHDFIGDN--WTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 559
            + IG+  P ++V+T  G  KL D+  +   W ++FSHP DFTPVCTTE   M   V +F +  V+ +GLS D V SH +W++ I+    G ++++P+IAD   E+  +L M+       SG  + +RA+ IV     ++    YPA  GR+ DE++R + +L+ + +  VA P  W   +
Sbjct:    2 VVIGEKFPEVEVKTTHGVIKLPDYFAEQGKWFVLFSHPADFTPVCTTEFYAMQKRVDQFRELGVEPIGLSVDQVFSHIKWMEWIKE-NLGEEITFPVIADDRGELADKLGMI------PSGATITARAVFIVDDKGIIRAIVYYPAEVGRDWDEILRLVKALKVSDEKGVALPHKWPNNE 174          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: TDXH_METTM (Probable peroxiredoxin OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.267e-25
Identity = 64/172 (37.21%), Postives = 92/172 (53.49%), Query Frame = 2
Query:   32 IGDSVPNLQVQTNQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANW 547
            IGD  P ++VQT  G  KL       W I+FSHP DFTPVCTTE        PE  + + +L+GLS D V SH +WI+ IE      ++ +P+IAD  R +   L ++ P    ++      RA+ +V P+  ++    YP   GRN+ E+VR + + +      VA PANW
Sbjct:    4 IGDKFPEMEVQTTHGLMKLPAEFKGRWFILFSHPADFTPVCTTEFVAFQEVYPELRELDCELVGLSVDQVFSHIKWIEWIEE-NLDTEIEFPVIADTGR-VADTLGLIHPARPTNT-----VRAVFVVDPEGIIRAILYYPQELGRNIPEIVRMIRAFRVIDAEGVAAPANW 168          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: TDXH1_SULME (Probable peroxiredoxin 1 OS=Sulfolobus metallicus PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.267e-25
Identity = 65/188 (34.57%), Postives = 104/188 (55.32%), Query Frame = 2
Query:   47 PNLQVQTNQG--NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDI-EAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXXDQAK 601
            P  QV T +G  +F    F    W  +F+HP DFTPVCTTE    +    EF +  V+L+G+S D + SH EW+KDI E Y  G +V +P+IADP++ + + L+++D    ++SG  +  RA+ +V P+  ++    YP   GR ++E++R   +     K KV+ P +W+ G           D+A+
Sbjct:    8 PETQVITTKGPLDFYRDVFEKGKWLFLFAHPADFTPVCTTEFVGFSKVYEEFKRLNVELVGMSVDSIYSHIEWLKDIQERY--GIQVPFPLIADPDKRLARLLDIID----EASGVTI--RAVFLVNPEGIIRFMAYYPIEYGRKIEELLRITKAALVNYKAKVSLPVDWEPGQEVIVPAPSTIDEAQ 187          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: TDXH_METVS (Probable peroxiredoxin OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0492 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.573e-25
Identity = 65/178 (36.52%), Postives = 97/178 (54.49%), Query Frame = 2
Query:   32 IGDSVPNLQVQTNQGNFKL--HDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 559
            IG+  P++++ T  G  KL  H      W ++FSHPGDFTPVCTTE         +F +   +L+GLS D V SH +W++ I+       + +PIIAD   ++  +L M+ P +  ++      RA+ +V     ++    YP   GRNMDEVVR + +LQ A K   ATPA+W   +
Sbjct:    4 IGEKFPDVELLTTHGKLKLPEHFIEAGKWFVLFSHPGDFTPVCTTEFVAFQKRYDQFRELNTELIGLSIDQVFSHIKWVEWIKEKL-DVDIEFPIIADERGDLAVKLGMISPFKGSNT-----VRAVFVVDATGTIRAIIYYPQEVGRNMDEVVRLVKALQTADK-GYATPADWPNNE 174          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: TDXH_PYRFU (Probable peroxiredoxin OS=Pyrococcus furiosus GN=PF1033 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.051e-23
Identity = 65/199 (32.66%), Postives = 105/199 (52.76%), Query Frame = 2
Query:   26 LTIGDSVPNLQVQTNQGNFKLHDFIGDN--WTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQ----GDXXXXXXXXXXDQAKE 604
            + IG+  P ++V+T  G  KL D       W ++FSHP DFTPVCTTE   +   + +F +  V+ +GLS D V SH +W++ I+    G ++ +P+IAD   ++ ++L M+       SG  + +RA+ IV     ++    YPA  GR+ DE++R + +L+ + +  VA P  W      GD          +Q KE
Sbjct:    2 IVIGEKFPEVEVKTTHGVIKLPDHFTKQGKWFMLFSHPADFTPVCTTEFYGLQIRLEKFRELGVEPIGLSVDQVFSHLKWMEWIKEKL-GVEIEFPVIADDRGDLAEKLGMI------PSGSTITARAVFIVDDKGIIRAIVYYPAEVGRDWDEILRLVKALKISTEKGVALPHKWPNNELIGDKVIVPPASSVEQIKE 193          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: TDXH_AERPE (Probable peroxiredoxin OS=Aeropyrum pernix GN=APE_2278 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.793e-23
Identity = 69/209 (33.01%), Postives = 103/209 (49.28%), Query Frame = 2
Query:   17 MPGLT--IGDSVPNLQVQTNQGNFKLHDFIGDN--WTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQ----GDXXXXXXXXXXDQAKETFPQG 619
            MPG    IG+  P ++V T+ G  KL D       W ++FSHP DFTPVCTTE    A    +F +  V L+GLS D V SH +W + IE +  G ++ +PIIADP   + ++L ++  +    +      R + IV     ++    YP   GR +DE++R + +L+     K A PA+W      G+          DQA+     G
Sbjct:    1 MPGSIPLIGERFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHI-GVRIPFPIIADPQGTVARRLGLLHAESATHT-----VRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNNEIIGEGLIVPPPTTEDQARARMESG 203          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: BAS1_HORVU (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Hordeum vulgare GN=BAS1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.736e-18
Identity = 52/161 (32.30%), Postives = 83/161 (51.55%), Query Frame = 2
Query:   77 NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 559
            N KL D+IG  + I+F +P DFT VC TE+   +    EF+K   ++LG+S D V SH  W++          + YP+++D  + I K   ++ PD+       +  R L I+  +  ++ S +     GR++DE +R L +LQ   K     PA WK G+
Sbjct:   39 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHEEFEKINTEILGVSVDSVFSHLAWVQTERKSGGLGDLKYPLVSDVTKSISKSFGVLIPDQ------GIALRGLFIIDKEGVIQHSTINNLGIGRSVDETLRTLQALQYVKKPDEVCPAGWKPGE 193          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: BAS1_WHEAT (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Triticum aestivum GN=TSA PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.962e-18
Identity = 52/161 (32.30%), Postives = 83/161 (51.55%), Query Frame = 2
Query:   77 NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 559
            N KL D+IG  + I+F +P DFT VC TE+   +    EF+K   ++LG+S D V SH  W++          + YP+++D  + I K   ++ PD+       +  R L I+  +  ++ S +     GR++DE +R L +LQ   K     PA WK G+
Sbjct:   39 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHEEFEKINTEILGVSVDSVFSHLAWVQTERKSGGLGDLKYPLVSDVTKSISKSFGVLIPDQ------GIALRGLFIIDKEGVIQHSTINNLGIGRSVDETLRTLRALQYVKKPDEVCPAGWKPGE 193          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: BAS1_ORYSJ (2-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BAS1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.618e-18
Identity = 53/162 (32.72%), Postives = 84/162 (51.85%), Query Frame = 2
Query:   77 NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKH-KVATPANWKQGD 559
            N KL D+IG  + I+F +P DFT VC TE+   +    EF+K   ++LG+S D V SH  W++          + YP+I+D  + I K   ++ PD+       +  R L I+  +  ++ S +   + GR++DE +R L +LQ    +     PA WK GD
Sbjct:   89 NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEFEKLNTEILGVSIDSVFSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQ------GIALRGLFIIDKEGVIQHSTINNLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPGD 244          
The following BLAST results are available for this feature:
BLAST of CX675404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
TDXH_PYRAB2.502e-2536.11Probable peroxiredoxin OS=Pyrococcus abyssi GN=PYR... [more]
TDXH_PYRKO3.267e-2535.00Probable peroxiredoxin OS=Pyrococcus kodakaraensis... [more]
TDXH_METTM4.267e-2537.21Probable peroxiredoxin OS=Methanobacterium thermoa... [more]
TDXH1_SULME4.267e-2534.57Probable peroxiredoxin 1 OS=Sulfolobus metallicus ... [more]
TDXH_METVS5.573e-2536.52Probable peroxiredoxin OS=Methanococcus vannielii ... [more]
TDXH_PYRFU1.051e-2332.66Probable peroxiredoxin OS=Pyrococcus furiosus GN=P... [more]
TDXH_AERPE1.793e-2333.01Probable peroxiredoxin OS=Aeropyrum pernix GN=APE_... [more]
BAS1_HORVU1.736e-1832.302-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
BAS1_WHEAT2.962e-1832.302-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
BAS1_ORYSJ8.618e-1832.722-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A07-B14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675404 ID=CX675404; Name=CX675404; organism=Citrus sinensis; type=EST; length=674bp
TCTCTTTGCTTTCAAAATGCCTGGCCTCACAATTGGAGATTCTGTTCCCA
ACCTTCAAGTCCAAACCAATCAAGGAAACTTTAAGCTTCATGACTTCATC
GGTGATAACTGGACCATTATCTTCTCTCACCCAGGTGATTTCACTCCTGT
GTGCACAACTGAACTTGGCAAGATGGCTGCTTATGTTCCAGAGTTTGATA
AGAGAGAAGTGAAGCTTCTGGGTTTGTCCTGTGATGACGTTAAGTCACAC
AATGAGTGGATCAAAGACATTGAAGCCTACACACCTGGTTGCAAGGTCTC
ATATCCAATCATCGCAGATCCCAATCGAGAGATCATCAAGCAACTCAACA
TGGTGGACCCGGATGAAAAAGATTCATCAGGAAAGCAGCTCCCTTCTCGA
GCCCTTCATATCGTGGGCCCTGATCATCAGGTGAAACTGAGCTTTCTTTA
CCCGGCGTCGACTGGCCGGAACATGGATGAAGTAGTAAGGGCATTGGACT
CTCTGCAGAAGGCACTGAAGCATAAGGTTGCAACGCCTGCAAACTGGAAG
CAGGGAGATCCGGTGGTGATATCACCAAGTGTGTCTAGTGATCAAGCCAA
AGAGACGTTCCCTCAAGGTTTTGAGACTGTGGATCTTCCATCCAAGAAAG
AGTACTTGCGTTTCACCAATGTCT
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