CX675404

Overview
NameCX675404
Unique NameCX675404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: YKUU_BACSU (Thioredoxin-like protein ykuU OS=Bacillus subtilis GN=ykuU PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.277e-17
Identity = 46/151 (30.46%), Postives = 81/151 (53.64%), Query Frame = 2
Query:  104 DNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 556
            D WT++F +P DFT VC TE+  M+    EF+  + +++G+S D + +H  WI          ++ YP+ AD N E+ ++  ++  +E       +  R L I+ P+ +++   ++  + GR++DE +R L +LQ         PANWK G
Sbjct:   36 DKWTVLFFYPMDFTFVCPTEITAMSDRYDEFEDLDAEVIGVSTDTIHTHLAWINTDRKENGLGQLKYPLAADTNHEVSREYGVLIEEE------GVALRGLFIINPEGELQYQTVFHNNIGRDVDETLRVLQALQTG----GLCPANWKPG 176          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: TDX1_BRUMA (Thioredoxin peroxidase 1 OS=Brugia malayi GN=TSA1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.123e-16
Identity = 52/162 (32.10%), Postives = 81/162 (50.00%), Query Frame = 2
Query:   74 GNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGC-KVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANW 547
            G+FK   + D+ G  W I+F +P DFT VC TE+   +    EF K   +L+  SCD   SH  WI+   +   G   +  P++AD N++I     ++D +        +  R L ++ P  +++ S +   S GR++DE  R L + Q   KH    PANW
Sbjct:   50 GDFKTISMKDYKG-KWLILFFYPLDFTFVCPTEITAFSDRCAEFQKLNTELIACSCDSHFSHLAWIQTPRSEVGGLGDMKIPVLADFNKDIANAFGVLDHE------TGISYRGLFLIDPSGEIRHSLVNDLSVGRSVDEAFRTLKAFQFVEKHGEVCPANW 204          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: BAS1_SPIOL (2-Cys peroxiredoxin BAS1, chloroplastic OS=Spinacia oleracea GN=BAS1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.772e-16
Identity = 50/159 (31.45%), Postives = 81/159 (50.94%), Query Frame = 2
Query:   83 KLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 559
            KL D+IG  + I+F +P DFT VC TE+   +    EF+K   ++LG+S D V SH  W++          ++YP+I+D  + I K   ++  D+       +  R L I+  +  ++ S +     GR++DE +R L +LQ         PA WK G+
Sbjct:   96 KLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQ------GIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYTGNPDEVCPAGWKPGE 248          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: BAS1B_ARATH (2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Arabidopsis thaliana GN=At5g06290 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.621e-16
Identity = 49/160 (30.63%), Postives = 84/160 (52.50%), Query Frame = 2
Query:   83 KLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKH-KVATPANWKQGD 559
            KL ++IG  + I+F +P DFT VC TE+   +    EF+K   ++LG+S D V SH  W++          ++YP+++D  + I K   ++ PD+       +  R L I+  +  ++ S +     GR++DE +R L +LQ   ++     PA WK G+
Sbjct:  101 KLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRYEEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDITKSISKSFGVLIPDQ------GIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYVQENPDEVCPAGWKPGE 254          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: BAS1A_ARATH (2-Cys peroxiredoxin BAS1, chloroplastic OS=Arabidopsis thaliana GN=BAS1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.797e-15
Identity = 50/160 (31.25%), Postives = 83/160 (51.88%), Query Frame = 2
Query:   83 KLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKH-KVATPANWKQGD 559
            KL D+IG  + I+F +P DFT VC TE+   +    EF+K   ++LG+S D V SH  W++          ++YP+I+D  + I K   ++  D+       +  R L I+  +  ++ S +     GR++DE +R L +LQ   ++     PA WK G+
Sbjct:   96 KLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQ------GIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYIQENPDEVCPAGWKPGE 249          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: TSAA_BUCBP (Probable peroxiredoxin OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=bbp_171 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.003e-15
Identity = 47/161 (29.19%), Postives = 80/161 (49.69%), Query Frame = 2
Query:   77 NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 559
            NF   +F  +  +I+F  P DFT VC +E+      + +F KR VKL+G+S D V  H+ W   +       K+++ +++D  REI +   +  P         +  RA  ++  +  ++   +     GRN+ E +R +D+L    K+    PANWK+GD
Sbjct:   25 NFNFKEFTNNQTSILFFWPMDFTFVCPSEIIAFNQELSKFKKRNVKLIGVSIDSVYVHHAWRNTLSHNGQIDKINFTMVSDLKREIQRSYGIEHPQ------LGVALRATFLIDKNRIIRHQTINDLPFGRNISETLRMIDALHFYEKYGEVCPANWKKGD 179          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: TSAA_BUCAP (Probable peroxiredoxin OS=Buchnera aphidicola subsp. Schizaphis graminum GN=BUsg_176 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 46/160 (28.75%), Postives = 77/160 (48.12%), Query Frame = 2
Query:   77 NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 556
            NF L  +     T++F  P DFT VC +E+ +       F+KR VK++G+S D V  H  W           K+ +P+++D   EI K  ++  P+        +  RA  ++  +  ++   +     GRN+DE++R +D+L    K+    P NWK G
Sbjct:   25 NFDLKKYSNGQITVLFFWPMDFTFVCPSEIIEFNKTFEAFEKRNVKIVGVSIDSVFVHQAWQNTFPENGGIGKIKFPMVSDIKHEIQKSYHIEHPE------LNIALRASFLIDENWIIRHQVVNDLPFGRNIDEMIRMIDALNFHNKYGEVCPVNWKHG 178          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: TDX_TRYBR (Thioredoxin peroxidase OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 51/164 (31.10%), Postives = 81/164 (49.39%), Query Frame = 2
Query:   74 GNFKLHDFIG--DNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGC-KVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 556
            G FK  D       W ++F +P DFT VC TE+ + +  V EF+  + +++  S D   SH  W  ++E    G   ++ PI+AD  + I+K   ++    K+  G  +  R L I+ P   ++   +     GRN+DE +R + + Q   KH    PANWK G
Sbjct:   24 GTFKKVDLASYRGKWVVLFFYPLDFTFVCPTEICQFSDRVKEFNDVDCEVIACSMDSEFSHLAW-TNVERKKGGLGTMNIPILADKTKSIMKAYGVL----KEEDG--VAYRGLFIIDPQQNLRQITINDLPVGRNVDETLRLVKAFQFVEKHGEVCPANWKPG 180          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: R20K_CLOPA (Putative peroxiredoxin in rubredoxin operon OS=Clostridium pasteurianum PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 54/183 (29.51%), Postives = 92/183 (50.27%), Query Frame = 2
Query:   32 IGDSVPNLQVQTNQGN------FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWI-KDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 559
            +G   P  +++  +G+       KL D+ G  W ++F +P DFT VC TE+   +    EF   + +LL +SCD   SH  WI +DI+    G K+++PI +D   E+  +  +   +E       +  R L I+ P+  V+ S ++  + GR++DE +R L    KA +       +W +GD
Sbjct:    5 VGKPAPEFEMKAVKGDGRGFTEVKLGDYKG-KWLVMFFYPLDFTFVCPTEITGFSKRAEEFRDLKAELLAVSCDSQYSHETWINQDIKQGGLG-KINFPIASDKTTEVSTKYGIQIEEE------GISLRGLFIIDPEGIVRYSVVHDLNVGRSVDETLRVL----KAFQTGGMCALDWHEGD 175          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: YCF42_PORPU (Putative peroxiredoxin ycf42 OS=Porphyra purpurea GN=ycf42 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 53/161 (32.92%), Postives = 85/161 (52.80%), Query Frame = 2
Query:   83 KLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIK-DIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKH-KVATPANWKQGD 559
            KL DF  + + I+F +P DFT VC TE+   +    +F +   ++LG+S D   SH  W++ D E+   G  + YP+++D  +EI    N++     +S G  L  R L I+ P   ++ S +     GR+++E +R L ++Q    H     PANWK GD
Sbjct:   31 KLSDF-KNKYVILFFYPLDFTFVCPTEITAFSDKYSDFSELNTEILGVSVDSEYSHLAWLQTDRESGGLG-DLEYPLVSDLKKEISIAYNVL-----NSGGVAL--RGLFIIDPKGIIQYSTVNNLEFGRSVEETLRVLQAIQYVQAHPDEVCPANWKPGD 182          
The following BLAST results are available for this feature:
BLAST of CX675404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
YKUU_BACSU4.277e-1730.46Thioredoxin-like protein ykuU OS=Bacillus subtilis... [more]
TDX1_BRUMA2.123e-1632.10Thioredoxin peroxidase 1 OS=Brugia malayi GN=TSA1 ... [more]
BAS1_SPIOL2.772e-1631.452-Cys peroxiredoxin BAS1, chloroplastic OS=Spinaci... [more]
BAS1B_ARATH3.621e-1630.632-Cys peroxiredoxin BAS1-like, chloroplastic OS=Ar... [more]
BAS1A_ARATH1.797e-1531.252-Cys peroxiredoxin BAS1, chloroplastic OS=Arabido... [more]
TSAA_BUCBP4.003e-1529.19Probable peroxiredoxin OS=Buchnera aphidicola subs... [more]
TSAA_BUCAP1.521e-1428.75Probable peroxiredoxin OS=Buchnera aphidicola subs... [more]
TDX_TRYBR2.595e-1431.10Thioredoxin peroxidase OS=Trypanosoma brucei rhode... [more]
R20K_CLOPA2.595e-1429.51Putative peroxiredoxin in rubredoxin operon OS=Clo... [more]
YCF42_PORPU2.197e-1332.92Putative peroxiredoxin ycf42 OS=Porphyra purpurea ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A07-B14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675404 ID=CX675404; Name=CX675404; organism=Citrus sinensis; type=EST; length=674bp
TCTCTTTGCTTTCAAAATGCCTGGCCTCACAATTGGAGATTCTGTTCCCA
ACCTTCAAGTCCAAACCAATCAAGGAAACTTTAAGCTTCATGACTTCATC
GGTGATAACTGGACCATTATCTTCTCTCACCCAGGTGATTTCACTCCTGT
GTGCACAACTGAACTTGGCAAGATGGCTGCTTATGTTCCAGAGTTTGATA
AGAGAGAAGTGAAGCTTCTGGGTTTGTCCTGTGATGACGTTAAGTCACAC
AATGAGTGGATCAAAGACATTGAAGCCTACACACCTGGTTGCAAGGTCTC
ATATCCAATCATCGCAGATCCCAATCGAGAGATCATCAAGCAACTCAACA
TGGTGGACCCGGATGAAAAAGATTCATCAGGAAAGCAGCTCCCTTCTCGA
GCCCTTCATATCGTGGGCCCTGATCATCAGGTGAAACTGAGCTTTCTTTA
CCCGGCGTCGACTGGCCGGAACATGGATGAAGTAGTAAGGGCATTGGACT
CTCTGCAGAAGGCACTGAAGCATAAGGTTGCAACGCCTGCAAACTGGAAG
CAGGGAGATCCGGTGGTGATATCACCAAGTGTGTCTAGTGATCAAGCCAA
AGAGACGTTCCCTCAAGGTTTTGAGACTGTGGATCTTCCATCCAAGAAAG
AGTACTTGCGTTTCACCAATGTCT
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