CX675404

Overview
NameCX675404
Unique NameCX675404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: YCF42_PORYE (Putative peroxiredoxin ycf42 OS=Porphyra yezoensis GN=ycf42 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.747e-13
Identity = 50/161 (31.06%), Postives = 84/161 (52.17%), Query Frame = 2
Query:   83 KLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIK-DIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKH-KVATPANWKQGD 559
            KL D + + + ++F +P DFT VC TE+   +     F +   ++LG+S D   SH  W++ D E+   G  +SYP+++D  +EI    N+++ D        +  R L I+ P   ++ S +     GR+++E +R L ++Q    H     PANWK GD
Sbjct:   31 KLSD-LKNKYIVLFFYPLDFTFVCPTEITAFSDKYNAFSELNTEVLGVSVDSEYSHLAWLQTDRESGGLG-DLSYPLVSDLKKEISAAYNVLNSD-------GVALRGLFIIDPKGIIQYSTINNLEFGRSVEETLRVLQAIQYVQSHPDEVCPANWKPGD 182          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: TSAA_BUCAI (Probable peroxiredoxin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=BU182 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 44/160 (27.50%), Postives = 78/160 (48.75%), Query Frame = 2
Query:   80 FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 559
            F L  +     T++F  P DFT VC +E+ +      EF KR VK++G+S D V  H  W   +       K+++P+++D   +I K   +  P+        +  RA  ++  +  ++   +     GRN+ +++R +D+L    K     PANWK+G+
Sbjct:   26 FDLKKYSNGQSTVLFFWPMDFTFVCPSEIIEFNKLHSEFKKRNVKIVGVSIDSVYVHQAWQNTLPKNGGIGKINFPMVSDVKHDIQKSYGIQHPN------LGIALRASFLIDSNWIIRHQVVNDLPFGRNITDMIRMVDALDFHNKFGEVCPANWKKGE 179          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: Y755_SYNY3 (Putative peroxiredoxin sll0755 OS=Synechocystis sp. (strain PCC 6803) GN=sll0755 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.424e-12
Identity = 48/183 (26.23%), Postives = 90/183 (49.18%), Query Frame = 2
Query:   26 LTIGDSVPNLQ----VQTNQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKH-KVATPANWKQGD 559
            L +G   P+      V  +    KL  + G  + ++F +P DFT VC TE+   +    EF   + +++G+S D   SH  WI+          ++YP+++D  +EI +  N+++PD        +  R L I+  +  ++ + +   S GR++DE +R L +++    H     P +W++GD
Sbjct:    5 LRVGQPAPDFTATAIVDQSFQTVKLSTYRG-KYLVLFFYPLDFTFVCPTEIIAFSDRHSEFTALDTEVVGISVDSEFSHLAWIQTERKMGGIGNINYPLVSDLKKEISQAYNVLEPD------AGIALRGLFIIDREGILQYATVNNLSFGRSVDETLRVLKAIRHVQSHPNEVCPVDWQEGD 180          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: TSAA_HELPJ (Probable peroxiredoxin OS=Helicobacter pylori J99 GN=tsaA PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.424e-12
Identity = 45/162 (27.78%), Postives = 83/162 (51.23%), Query Frame = 2
Query:   77 NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGC-KVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 559
            +F+L   +G N  I+F  P DFT VC TE+      V +F ++   ++G+S D  + H  W K+      G  +VS+P++AD  + I +  +++  +        +  R   ++  + +V+ + +     GRN DE++R +D+L    +H    PA W++GD
Sbjct:   24 HFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAW-KNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEE-------AIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGD 177          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: TSAA_HELPY (Probable peroxiredoxin OS=Helicobacter pylori GN=tsaA PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.429e-12
Identity = 44/162 (27.16%), Postives = 83/162 (51.23%), Query Frame = 2
Query:   77 NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGC-KVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 559
            +F+L   +G N  I+F  P DFT VC TE+      V +F ++   ++G+S D  + H  W K+      G  +V++P++AD  + I +  +++  +        +  R   ++  + +V+ + +     GRN DE++R +D+L    +H    PA W++GD
Sbjct:   24 HFELSKNLGKNGAILFFWPKDFTFVCPTEIIAFDKRVKDFQEKGFNVIGVSIDSEQVHFAW-KNTPVEKGGIGQVTFPMVADITKSISRDYDVLFEE-------AIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGD 177          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: AHPC_SHIFL (Alkyl hydroperoxide reductase subunit C OS=Shigella flexneri GN=ahpC PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 43/151 (28.48%), Postives = 69/151 (45.70%), Query Frame = 2
Query:  110 WTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHK-VATPANWKQGD 559
            W++ F +P DFT VC TELG +A +  E  K  V +  +S D   +H  W    E      K+ Y +I DP   + +  + +  DE       L  RA  +V P   ++   +     GR+  +++R + + Q    H     PA WK+G+
Sbjct:   33 WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETI---AKIKYAMIGDPTGALTRNFDNMREDE------GLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGE 174          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: AHPC_ECOLI (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli (strain K12) GN=ahpC PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 43/151 (28.48%), Postives = 69/151 (45.70%), Query Frame = 2
Query:  110 WTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHK-VATPANWKQGD 559
            W++ F +P DFT VC TELG +A +  E  K  V +  +S D   +H  W    E      K+ Y +I DP   + +  + +  DE       L  RA  +V P   ++   +     GR+  +++R + + Q    H     PA WK+G+
Sbjct:   33 WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETI---AKIKYAMIGDPTGALTRNFDNMREDE------GLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGE 174          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: AHPC_ECOL6 (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli O6 GN=ahpC PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 43/151 (28.48%), Postives = 69/151 (45.70%), Query Frame = 2
Query:  110 WTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHK-VATPANWKQGD 559
            W++ F +P DFT VC TELG +A +  E  K  V +  +S D   +H  W    E      K+ Y +I DP   + +  + +  DE       L  RA  +V P   ++   +     GR+  +++R + + Q    H     PA WK+G+
Sbjct:   33 WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETI---AKIKYAMIGDPTGALTRNFDNMREDE------GLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGE 174          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: AHPC_ECO57 (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli O157:H7 GN=ahpC PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 43/151 (28.48%), Postives = 69/151 (45.70%), Query Frame = 2
Query:  110 WTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHK-VATPANWKQGD 559
            W++ F +P DFT VC TELG +A +  E  K  V +  +S D   +H  W    E      K+ Y +I DP   + +  + +  DE       L  RA  +V P   ++   +     GR+  +++R + + Q    H     PA WK+G+
Sbjct:   33 WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETI---AKIKYAMIGDPTGALTRNFDNMREDE------GLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGE 174          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: PRDX_ASCSU (Peroxiredoxin OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 49/164 (29.88%), Postives = 78/164 (47.56%), Query Frame = 2
Query:   74 GNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 556
            G+FK   L D+ G  + ++F +P DFT VC TE+   + +V EF K  V++L  S D   SH  WI          ++  PII+D N +I +   ++  D+       +  R L I+ P   ++   +     GR++ E +R + + Q   KH    PA W  G
Sbjct:   21 GDFKSISLSDYKG-KYVVLFFYPMDFTFVCPTEIIAFSEHVGEFKKLGVEVLAASTDSQFSHLAWINTPRKQGGLGEMKIPIISDNNHQISRDYGVLKEDD------GIAYRGLFIIDPKGILRQITVNDLPVGRSVTETLRLVQAFQFVDKHGEVCPAGWTPG 177          
The following BLAST results are available for this feature:
BLAST of CX675404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
YCF42_PORYE3.747e-1331.06Putative peroxiredoxin ycf42 OS=Porphyra yezoensis... [more]
TSAA_BUCAI4.894e-1327.50Probable peroxiredoxin OS=Buchnera aphidicola subs... [more]
Y755_SYNY31.424e-1226.23Putative peroxiredoxin sll0755 OS=Synechocystis sp... [more]
TSAA_HELPJ1.424e-1227.78Probable peroxiredoxin OS=Helicobacter pylori J99 ... [more]
TSAA_HELPY2.429e-1227.16Probable peroxiredoxin OS=Helicobacter pylori GN=t... [more]
AHPC_SHIFL3.172e-1228.48Alkyl hydroperoxide reductase subunit C OS=Shigell... [more]
AHPC_ECOLI3.172e-1228.48Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
AHPC_ECOL63.172e-1228.48Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
AHPC_ECO573.172e-1228.48Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
PRDX_ASCSU4.143e-1229.88Peroxiredoxin OS=Ascaris suum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A07-B14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675404 ID=CX675404; Name=CX675404; organism=Citrus sinensis; type=EST; length=674bp
TCTCTTTGCTTTCAAAATGCCTGGCCTCACAATTGGAGATTCTGTTCCCA
ACCTTCAAGTCCAAACCAATCAAGGAAACTTTAAGCTTCATGACTTCATC
GGTGATAACTGGACCATTATCTTCTCTCACCCAGGTGATTTCACTCCTGT
GTGCACAACTGAACTTGGCAAGATGGCTGCTTATGTTCCAGAGTTTGATA
AGAGAGAAGTGAAGCTTCTGGGTTTGTCCTGTGATGACGTTAAGTCACAC
AATGAGTGGATCAAAGACATTGAAGCCTACACACCTGGTTGCAAGGTCTC
ATATCCAATCATCGCAGATCCCAATCGAGAGATCATCAAGCAACTCAACA
TGGTGGACCCGGATGAAAAAGATTCATCAGGAAAGCAGCTCCCTTCTCGA
GCCCTTCATATCGTGGGCCCTGATCATCAGGTGAAACTGAGCTTTCTTTA
CCCGGCGTCGACTGGCCGGAACATGGATGAAGTAGTAAGGGCATTGGACT
CTCTGCAGAAGGCACTGAAGCATAAGGTTGCAACGCCTGCAAACTGGAAG
CAGGGAGATCCGGTGGTGATATCACCAAGTGTGTCTAGTGATCAAGCCAA
AGAGACGTTCCCTCAAGGTTTTGAGACTGTGGATCTTCCATCCAAGAAAG
AGTACTTGCGTTTCACCAATGTCT
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