CX675404

Overview
NameCX675404
Unique NameCX675404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: PRDX1_MOUSE (Peroxiredoxin-1 OS=Mus musculus GN=Prdx1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 51/180 (28.33%), Postives = 81/180 (45.00%), Query Frame = 2
Query:   32 IGDSVPNLQVQT--NQGNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 556
            IG   PN +       G FK   L ++ G  + + F +P DFT VC TE+   +    EF K   +++G S D    H  WI   +       ++ P+I+DP R I +   ++  DE       +  R L I+     ++   +     GR++DE++R + + Q   KH    PA WK G
Sbjct:    8 IGYPAPNFKATAVMPDGQFKDISLSEYKG-KYVVFFFYPLDFTFVCPTEIIAFSDRADEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADE------GISFRGLFIIDDKGILRQITINDLPVGRSVDEIIRLVQAFQFTDKHGEVCPAGWKPG 180          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: AHPC_SALTY (Alkyl hydroperoxide reductase subunit C OS=Salmonella typhimurium GN=ahpC PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 43/151 (28.48%), Postives = 69/151 (45.70%), Query Frame = 2
Query:  110 WTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHK-VATPANWKQGD 559
            W++ F +P DFT VC TELG +A +  E  K  V +  +S D   +H  W    E      K+ Y +I DP   + +  + +  DE       L  RA  +V P   ++   +     GR+  +++R + + Q    H     PA WK+G+
Sbjct:   33 WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETI---AKIKYAMIGDPTGALTRNFDNMREDE------GLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGE 174          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: AHPC_SALTI (Alkyl hydroperoxide reductase subunit C OS=Salmonella typhi GN=ahpC PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 43/151 (28.48%), Postives = 69/151 (45.70%), Query Frame = 2
Query:  110 WTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHK-VATPANWKQGD 559
            W++ F +P DFT VC TELG +A +  E  K  V +  +S D   +H  W    E      K+ Y +I DP   + +  + +  DE       L  RA  +V P   ++   +     GR+  +++R + + Q    H     PA WK+G+
Sbjct:   33 WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETI---AKIKYAMIGDPTGALTRNFDNMREDE------GLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGE 174          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: TDX1_CAEEL (Probable peroxiredoxin prdx-3 OS=Caenorhabditis elegans GN=prdx-3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 48/163 (29.45%), Postives = 78/163 (47.85%), Query Frame = 2
Query:   74 GNFKL---HDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQ 553
            G+FK+    D+ G  W ++F +P DFT VC TE+        EF     +++  SCD   SH  W+           +  P++AD N++I     ++D   K+S    L  R L ++ P   V+ +       GR++DE +R L + Q + KH    PA+W +
Sbjct:   50 GDFKVISDQDYKG-KWLVMFFYPLDFTFVCPTEIIAYGDRANEFRSLGAEVVACSCDSHFSHLAWVNTPRKDGGLGDMDIPLLADFNKKIADSFGVLD---KESG---LSYRGLFLIDPSGTVRHTTCNDLPVGRSVDETLRVLKAFQFSDKHGEVCPADWHE 205          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: PRDX1_RAT (Peroxiredoxin-1 OS=Rattus norvegicus GN=Prdx1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 50/180 (27.78%), Postives = 81/180 (45.00%), Query Frame = 2
Query:   32 IGDSVPNLQVQT--NQGNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 556
            IG   P+ +       G FK   L D+ G  + + F +P DFT VC TE+   +    EF K   +++G S D    H  WI   +       ++ P+++DP R I +   ++  DE       +  R L I+     ++   +     GR++DE++R + + Q   KH    PA WK G
Sbjct:    8 IGHPAPSFKATAVMPDGQFKDISLSDYKG-KYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADE------GISFRGLFIIDDKGILRQITINDLPVGRSVDEILRLVQAFQFTDKHGEVCPAGWKPG 180          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: PRDX1_MYOLU (Peroxiredoxin-1 OS=Myotis lucifugus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 51/180 (28.33%), Postives = 80/180 (44.44%), Query Frame = 2
Query:   32 IGDSVPNLQVQT--NQGNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 556
            IG   PN +       G FK   L D+ G  + + F +P DFT VC TE+   +    EF K   +++G S D    H  WI   +       ++ P+++DP R I +   ++  DE       +  R L I+     ++   +     GR++DE +R + + Q   KH    PA WK G
Sbjct:    8 IGHPAPNFKATAVMPDGQFKDISLSDYKG-KYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKINCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADE------GISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 180          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: PRDX1_HUMAN (Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 50/180 (27.78%), Postives = 80/180 (44.44%), Query Frame = 2
Query:   32 IGDSVPNLQVQT--NQGNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 556
            IG   PN +       G FK   L D+ G  + + F +P DFT VC TE+   +    EF K   +++G S D    H  W+   +       ++ P+++DP R I +   ++  DE       +  R L I+     ++   +     GR++DE +R + + Q   KH    PA WK G
Sbjct:    8 IGHPAPNFKATAVMPDGQFKDISLSDYKG-KYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADE------GISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 180          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: PRDX1_DROME (Peroxiredoxin 1 OS=Drosophila melanogaster GN=Jafrac1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 42/160 (26.25%), Postives = 76/160 (47.50%), Query Frame = 2
Query:   77 NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 556
            + KL D+ G  + ++F +P DFT VC TE+   +    EF K   +++G S D   +H  WI           +  P++AD + ++ +   ++D +        +P R L I+     ++   +     GR+++E +R + + Q   K+    PANWK G
Sbjct:   23 DIKLSDYKG-KYLVLFFYPLDFTFVCPTEIIAFSESAAEFRKINCEVIGCSTDSQFTHLAWINTPRKQGGLGSMDIPLLADKSMKVARDYGVLDEE------TGIPFRGLFIIDDKQNLRQITVNDLPVGRSVEETLRLVQAFQYTDKYGEVCPANWKPG 175          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: PRDX1_CRIGR (Peroxiredoxin-1 OS=Cricetulus griseus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 49/180 (27.22%), Postives = 81/180 (45.00%), Query Frame = 2
Query:   32 IGDSVPNLQVQT--NQGNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 556
            IG   PN +       G F+   L ++ G  + + F +P DFT VC TE+   +    EF K   +++G S D    H  WI   +       ++ P+++DP R I +   ++  DE       +  R L I+     ++   +     GR++DE++R + + Q   KH    PA WK G
Sbjct:    8 IGYPAPNFKATAVMPDGQFRDICLSEYRG-KYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADE------GISFRGLFIIDDKGILRQITINDLPVGRSVDEILRLVQAFQFTDKHGEVCPAGWKPG 180          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: PRDX1_BOVIN (Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 48/164 (29.27%), Postives = 75/164 (45.73%), Query Frame = 2
Query:   74 GNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 556
            G FK   L D+ G  + + F +P DFT VC TE+   +    EF K   +++G S D    H  WI   +       ++ P+I+DP R I +   ++  DE       +  R L I+     ++   +     GR++DE +R + + Q   KH    PA WK G
Sbjct:   24 GQFKDISLADYKG-KYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADE------GISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 180          
The following BLAST results are available for this feature:
BLAST of CX675404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
PRDX1_MOUSE4.143e-1228.33Peroxiredoxin-1 OS=Mus musculus GN=Prdx1 PE=1 SV=1[more]
AHPC_SALTY4.143e-1228.48Alkyl hydroperoxide reductase subunit C OS=Salmone... [more]
AHPC_SALTI4.143e-1228.48Alkyl hydroperoxide reductase subunit C OS=Salmone... [more]
TDX1_CAEEL7.066e-1229.45Probable peroxiredoxin prdx-3 OS=Caenorhabditis el... [more]
PRDX1_RAT7.066e-1227.78Peroxiredoxin-1 OS=Rattus norvegicus GN=Prdx1 PE=1... [more]
PRDX1_MYOLU7.066e-1228.33Peroxiredoxin-1 OS=Myotis lucifugus GN=PRDX1 PE=1 ... [more]
PRDX1_HUMAN7.066e-1227.78Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1[more]
PRDX1_DROME1.205e-1126.25Peroxiredoxin 1 OS=Drosophila melanogaster GN=Jafr... [more]
PRDX1_CRIGR2.056e-1127.22Peroxiredoxin-1 OS=Cricetulus griseus GN=PRDX1 PE=... [more]
PRDX1_BOVIN2.056e-1129.27Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A07-B14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675404 ID=CX675404; Name=CX675404; organism=Citrus sinensis; type=EST; length=674bp
TCTCTTTGCTTTCAAAATGCCTGGCCTCACAATTGGAGATTCTGTTCCCA
ACCTTCAAGTCCAAACCAATCAAGGAAACTTTAAGCTTCATGACTTCATC
GGTGATAACTGGACCATTATCTTCTCTCACCCAGGTGATTTCACTCCTGT
GTGCACAACTGAACTTGGCAAGATGGCTGCTTATGTTCCAGAGTTTGATA
AGAGAGAAGTGAAGCTTCTGGGTTTGTCCTGTGATGACGTTAAGTCACAC
AATGAGTGGATCAAAGACATTGAAGCCTACACACCTGGTTGCAAGGTCTC
ATATCCAATCATCGCAGATCCCAATCGAGAGATCATCAAGCAACTCAACA
TGGTGGACCCGGATGAAAAAGATTCATCAGGAAAGCAGCTCCCTTCTCGA
GCCCTTCATATCGTGGGCCCTGATCATCAGGTGAAACTGAGCTTTCTTTA
CCCGGCGTCGACTGGCCGGAACATGGATGAAGTAGTAAGGGCATTGGACT
CTCTGCAGAAGGCACTGAAGCATAAGGTTGCAACGCCTGCAAACTGGAAG
CAGGGAGATCCGGTGGTGATATCACCAAGTGTGTCTAGTGATCAAGCCAA
AGAGACGTTCCCTCAAGGTTTTGAGACTGTGGATCTTCCATCCAAGAAAG
AGTACTTGCGTTTCACCAATGTCT
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