CX675404

Overview
NameCX675404
Unique NameCX675404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: TDX_ENCCU (Putative thioredoxin peroxidase OS=Encephalitozoon cuniculi GN=ECU03_1190 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 48/175 (27.43%), Postives = 82/175 (46.86%), Query Frame = 2
Query:   29 TIGDSVPNLQVQTNQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVK-LSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWK 550
            T+ DS     V        L D+IG  + ++  +P DFT VC TE+ + +     F +R   +L +SCD V +H  W             ++P++ D  RE+  Q  + D +         P R+  I+  D  V+ +S  Y A  GR++DE++R +D++    ++    PA W+
Sbjct:    5 TLTDSKYKAFVDGEIKEISLQDYIG-KYVVLAFYPLDFTFVCPTEINRFSDLKGAFLRRNAVVLLISCDSVYTHKAWASIPREQNGVLGTAWPMVWDAKRELCNQFGLYDEENGH------PMRSTVILAKDLSVRHISSNYHA-IGRSVDEIIRLIDAITFNDENGDICPAEWR 171          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: PRXU_EUBAC (Selenocysteine-containing peroxiredoxin prxU OS=Eubacterium acidaminophilum GN=prxU PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 43/161 (26.71%), Postives = 78/161 (48.45%), Query Frame = 2
Query:   80 FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVA--TPANWKQG 556
            F+L +++G  W ++  +PGDFT V  TE+  +A   PEF K  V++L +S D V  H  W  +  +      + +P+++D    +     + DP+        + +R   ++ PD  ++   +     GRN+ E +R + + Q   + K A   P+ WK G
Sbjct:   24 FRLSEYLG-KWVVLCFYPGDFTFVUATEVSAVAEKYPEFQKLGVEVLSVSVDSVFVHKMWNDNELSKMVEGGIPFPMLSDGGGNVGTLYGVYDPE------AGVENRGRFLIDPDGIIQGYEVLILPVGRNVSETLRQIQAFQLVRETKGAEVAPSGWKPG 177          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: TDX_FASHE (Thioredoxin peroxidase OS=Fasciola hepatica PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 45/172 (26.16%), Postives = 82/172 (47.67%), Query Frame = 2
Query:   47 PNLQVQTNQGN----FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWK 550
            PN   Q   G       L D+ G  W I+  +P DFT VC TE+  ++  + +F +R   ++  S D V SH +W K         ++++P++AD N  + +   ++D ++ ++       R   ++ P   ++   +     GR+++E +R LD+     +H    PANWK
Sbjct:    9 PNFSGQAVVGKEFETISLSDYKG-KWVILAFYPLDFTFVCPTEIIAISDQMEQFAQRNCAVIFCSTDSVYSHLQWTKMDRKVGGIGQLNFPLLADKNMSVSRAFGVLDEEQGNT------YRGNFLIDPKGVLRQITVNDDPVGRSVEEALRLLDAFIFHEEHGEVCPANWK 173          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: TDX_ECHGR (Thioredoxin peroxidase OS=Echinococcus granulosus GN=TPX PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 48/159 (30.19%), Postives = 75/159 (47.17%), Query Frame = 2
Query:   86 LHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEW--IKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 556
            L D+ G  + I+F +P DFT VC TE+        EF +R  +LL  S D    H  W  +   E    G ++  P++AD N +I +   ++  D+       +  R L I+     ++   +     GR++DE +R LD+ Q   KH    PANW+ G
Sbjct:   27 LSDYRG-KYVILFFYPMDFTFVCPTEIIAFNDRADEFHQRGCQLLACSTDSGYCHLAWNNVSRKEGGVQGMRI--PMLADTNHKISRDYGVLIEDQ------GIALRGLFIIDDKGVLRQITINDLPVGRSVDEALRLLDAFQFTDKHGEVCPANWQPG 176          
BLAST of CX675404 vs. ExPASy Swiss-Prot
Match: PRDX1_CHICK (Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 45/160 (28.12%), Postives = 72/160 (45.00%), Query Frame = 2
Query:   77 NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKMAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 556
            + KL D+ G  + + F +P DFT VC TE+   +    EF K   +++G S D    H  WI   +       +  P+++D  R I K   ++  DE       +  R L I+     ++   +     GR++DE +R + + Q   KH    PA WK G
Sbjct:   28 DIKLSDYRG-KYVVFFFYPLDFTFVCPTEIIAYSDRADEFKKINCEIIGASVDSHFCHLAWINTPKKQGGLGTMKIPLVSDTKRVIAKDYGVLKEDE------GIAYRGLFIIDEKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 180          
The following BLAST results are available for this feature:
BLAST of CX675404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
TDX_ENCCU2.685e-1127.43Putative thioredoxin peroxidase OS=Encephalitozoon... [more]
PRXU_EUBAC2.685e-1126.71Selenocysteine-containing peroxiredoxin prxU OS=Eu... [more]
TDX_FASHE3.507e-1126.16Thioredoxin peroxidase OS=Fasciola hepatica PE=2 S... [more]
TDX_ECHGR4.580e-1130.19Thioredoxin peroxidase OS=Echinococcus granulosus ... [more]
PRDX1_CHICK5.982e-1128.13Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A07-B14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675404 ID=CX675404; Name=CX675404; organism=Citrus sinensis; type=EST; length=674bp
TCTCTTTGCTTTCAAAATGCCTGGCCTCACAATTGGAGATTCTGTTCCCA
ACCTTCAAGTCCAAACCAATCAAGGAAACTTTAAGCTTCATGACTTCATC
GGTGATAACTGGACCATTATCTTCTCTCACCCAGGTGATTTCACTCCTGT
GTGCACAACTGAACTTGGCAAGATGGCTGCTTATGTTCCAGAGTTTGATA
AGAGAGAAGTGAAGCTTCTGGGTTTGTCCTGTGATGACGTTAAGTCACAC
AATGAGTGGATCAAAGACATTGAAGCCTACACACCTGGTTGCAAGGTCTC
ATATCCAATCATCGCAGATCCCAATCGAGAGATCATCAAGCAACTCAACA
TGGTGGACCCGGATGAAAAAGATTCATCAGGAAAGCAGCTCCCTTCTCGA
GCCCTTCATATCGTGGGCCCTGATCATCAGGTGAAACTGAGCTTTCTTTA
CCCGGCGTCGACTGGCCGGAACATGGATGAAGTAGTAAGGGCATTGGACT
CTCTGCAGAAGGCACTGAAGCATAAGGTTGCAACGCCTGCAAACTGGAAG
CAGGGAGATCCGGTGGTGATATCACCAAGTGTGTCTAGTGATCAAGCCAA
AGAGACGTTCCCTCAAGGTTTTGAGACTGTGGATCTTCCATCCAAGAAAG
AGTACTTGCGTTTCACCAATGTCT
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