CX675403

Overview
NameCX675403
Unique NameCX675403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4345 contig Csv1_Contig4345:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: REHY_TORRU (Probable 1-Cys peroxiredoxin OS=Tortula ruralis PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.516e-72
Identity = 128/206 (62.14%), Postives = 158/206 (76.70%), Query Frame = -3
Query:  130 GLTIGDCVPNFQVQTTQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXSDQAKETFPQGFETVDLP 747
            G  +GD VP+ Q  +T G+ K+ D+  D WTIIFSHPGD+ PVCTTELGK AAY PEF+KR VKLLGLS D V+ H  WIKDIE+YTP   V YPI+ADP+R+I   LNM+DPDEKD++GK L SRALHI+GPD ++KLS LYP +TGRN DEV+R LDSLQ A KHK+ATPANW++G+          ++AK+ FPQG+ETV+LP
Sbjct:    4 GWALGDLVPDIQADSTMGHIKVRDYCKDGWTIIFSHPGDYPPVCTTELGKIAAYNPEFEKRGVKLLGLSTDTVEDHQGWIKDIESYTPDAPVLYPILADPDRKITVALNMMDPDEKDANGKPLASRALHIIGPDCRLKLSLLYPGTTGRNFDEVLRVLDSLQLASKHKIATPANWQKGEPVVISPSVSDEKAKQMFPQGWETVNLP 209          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: PRDX6_CHICK (Peroxiredoxin-6 OS=Gallus gallus GN=PRDX6 PE=2 SV=3)

HSP 1 Score: 247.284 bits (630), Expect = 6.820e-65
Identity = 119/220 (54.09%), Postives = 150/220 (68.18%), Query Frame = -3
Query:  103 MPGLTIGDCVPNFQVQTTQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT---PGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXSDQAKETFPQGFETVDLPSKKEYLRFT 753
            MPGL +GD  PNF+  TTQG  + HDF+GD+W I+FSHP DFTPVCTTELG+ A   PEF KR VK++ LS D V  H  W KDI AY    P  K+ +PIIAD +RE+  +L M+DPDE+D  G  L +R + I GPD ++KLS LYPA+TGRN DE++R +DSLQ     KVATP +WK GD          ++AK+ FP+G  T DLPS K+YLR+T
Sbjct:    1 MPGLLLGDEAPNFEADTTQGGIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFSKRNVKMIALSIDSVPDHLAWSKDINAYNGDQPVEKLPFPIIADKDRELAVKLGMLDPDERDKDGMPLTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVVDSLQLTAYKKVATPVDWKCGDSVMVVPTLPDEEAKKLFPKGVFTKDLPSGKKYLRYT 220          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: PRDX6_HUMAN (Peroxiredoxin-6 OS=Homo sapiens GN=PRDX6 PE=1 SV=3)

HSP 1 Score: 232.646 bits (592), Expect = 1.738e-60
Identity = 112/218 (51.38%), Postives = 145/218 (66.51%), Query Frame = -3
Query:  103 GLTIGDCVPNFQVQTTQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT---PGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXSDQAKETFPQGFETVDLPSKKEYLRFT 747
            GL +GD  PNF+  TT G  + HDF+GD+W I+FSHP DFTPVCTTELG+ A   PEF KR VKL+ LS D V+ H  W KDI AY    P  K+ +PII D NRE+   L M+DP EKD  G  + +R + + GPD ++KLS LYPA+TGRN DE++R + SLQ   + +VATP +WK GD          ++AK+ FP+G  T +LPS K+YLR+T
Sbjct:    4 GLLLGDVAPNFEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNCEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAKKLFPKGVFTKELPSGKKYLRYT 221          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: PRDX6_BOVIN (Peroxiredoxin-6 OS=Bos taurus GN=PRDX6 PE=1 SV=3)

HSP 1 Score: 231.876 bits (590), Expect = 2.965e-60
Identity = 111/218 (50.92%), Postives = 146/218 (66.97%), Query Frame = -3
Query:  103 GLTIGDCVPNFQVQTTQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT---PGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXSDQAKETFPQGFETVDLPSKKEYLRFT 747
            GL +GD  PNF+  TT G  + HD++GD+W I+FSHP DFTPVCTTELG+ A   PEF KR VK++ LS D V+ H  W KDI AY    P  K+ +PII D NR++  QL M+DP EKD  G  + +R + I GPD ++KLS LYPA+TGRN DE++R + SLQ   + +VATP +WK GD          ++AK+ FP+G  T +LPS K+YLR+T
Sbjct:    4 GLLLGDEAPNFEANTTIGRIRFHDYLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPTEKLPFPIIDDKNRDLAIQLGMLDPAEKDEKGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDSVMVLPTIPEEEAKKLFPKGVFTKELPSGKKYLRYT 221          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: PRDX6_RAT (Peroxiredoxin-6 OS=Rattus norvegicus GN=Prdx6 PE=1 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 5.058e-60
Identity = 111/218 (50.92%), Postives = 147/218 (67.43%), Query Frame = -3
Query:  103 GLTIGDCVPNFQVQTTQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT---PGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXSDQAKETFPQGFETVDLPSKKEYLRFT 747
            GL +GD  PNF+  TT G+ + HDF+GD+W I+FSHP DFTPVCTTELG+ A   PEF KR VKL+ LS D V+ H  W KDI AY    P  K+ +PII D +R++   L M+DP EKD  G  + +R + I GPD ++KLS LYPA+TGRN DE++R +DSLQ    + VATP +WK+G+          ++AK+ FP+G  T +LPS K+YLR+T
Sbjct:    4 GLLLGDEAPNFEANTTIGHIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHFAWSKDINAYNGAAPTEKLPFPIIDDKDRDLAILLGMLDPAEKDEKGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVVDSLQLTASNPVATPVDWKKGESVMVLPTLPEEEAKQLFPKGVFTKELPSGKKYLRYT 221          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: PRDX6_PONAB (Peroxiredoxin-6 OS=Pongo abelii GN=PRDX6 PE=2 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 1.472e-59
Identity = 111/218 (50.92%), Postives = 144/218 (66.06%), Query Frame = -3
Query:  103 GLTIGDCVPNFQVQTTQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT---PGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXSDQAKETFPQGFETVDLPSKKEYLRFT 747
            GL +GD  PNF+  TT G  + HDF+GD+W I+FSHP DFTPVCTTELG+ A   PEF KR VKL+ LS D V+ H  W KDI AY    P  K+ +PII D NRE+   L M+DP EKD  G    +R + + GPD ++KLS LYPA+TGRN DE++R + SLQ   + +VATP +WK GD          ++AK+ FP+G  T +LPS ++YLR+T
Sbjct:    4 GLLLGDVAPNFEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNCEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPGTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAKKLFPKGVFTKELPSGRKYLRYT 221          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: PRDX6_PIG (Peroxiredoxin-6 OS=Sus scrofa GN=PRDX6 PE=2 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 2.510e-59
Identity = 110/218 (50.46%), Postives = 145/218 (66.51%), Query Frame = -3
Query:  103 GLTIGDCVPNFQVQTTQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT---PGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXSDQAKETFPQGFETVDLPSKKEYLRFT 747
            GL +GD  PNF+  TT G  + HDF+GD+W I+FSHP DFTPVCTTELG+ A   PEF KR VK++ LS D V+ H  W KDI AY    P   + +PII D +R++  QL M+DP EKD  G  + +R + I GPD ++KLS LYPA+TGRN DE++R + SLQ   + +VATP +WK GD          ++AK+ FP+G  T +LPS K+YLR+T
Sbjct:    4 GLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPKETLPFPIIDDKSRDLAIQLGMLDPAEKDEQGMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVIISLQLTAEKRVATPVDWKNGDSVMVLPNIPEEEAKKLFPKGVFTKELPSGKKYLRYT 221          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: PRDX6_MACFA (Peroxiredoxin-6 OS=Macaca fascicularis GN=PRDX6 PE=2 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 2.510e-59
Identity = 110/218 (50.46%), Postives = 144/218 (66.06%), Query Frame = -3
Query:  103 GLTIGDCVPNFQVQTTQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYT---PGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXSDQAKETFPQGFETVDLPSKKEYLRFT 747
            GL +GD  PNF+  TT G  + HDF+GD+W I+FSHP DFTPVCTTELG+ A   PEF KR VKL+ LS D V+ H  W KD  AY    P  K+ +PII D NR++   L M+DP EKD  G  + +R + + GPD ++KLS LYPA+TGRN DE++R + SLQ   + +VATP +WK GD          ++AK+ FP+G  T +LPS K+YLR+T
Sbjct:    4 GLLLGDEAPNFEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDTNAYNCEEPTEKLPFPIIDDKNRDLAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDWKDGDSVMVLPTIPEEEAKKLFPKGVFTKELPSGKKYLRYT 221          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: PRDX6_MOUSE (Peroxiredoxin-6 OS=Mus musculus GN=Prdx6 PE=1 SV=3)

HSP 1 Score: 227.639 bits (579), Expect = 5.592e-59
Identity = 111/218 (50.92%), Postives = 145/218 (66.51%), Query Frame = -3
Query:  103 GLTIGDCVPNFQVQTTQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAY---TPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXSDQAKETFPQGFETVDLPSKKEYLRFT 747
            GL +GD  PNF+  TT G  + HDF+GD+W I+FSHP DFTPVCTTELG+ A   PEF KR VKL+ LS D V+ H  W KDI AY   TP  K+ +PII D  R++   L M+DP EKD +   + +R + I GPD ++KLS LYPA+TGRN DE++R +DSLQ      VATP +WK+G+          ++AK+ FP+G  T +LPS K+YLR+T
Sbjct:    4 GLLLGDEAPNFEANTTIGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNGETPTEKLPFPIIDDKGRDLAILLGMLDPVEKDDNNMPVTARVVFIFGPDKKLKLSILYPATTGRNFDEILRVVDSLQLTGTKPVATPVDWKKGESVMVVPTLSEEEAKQCFPKGVFTKELPSGKKYLRYT 221          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: 1CPX_DIRIM (1-Cys peroxiredoxin OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.147e-54
Identity = 105/226 (46.46%), Postives = 143/226 (63.27%), Query Frame = -3
Query:  109 GLTIGDCVPNFQVQTTQGNF-KLHDFIG-DNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTP-----------GCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGDXXXXXXXXXSDQAKETFPQGFETVDLPSKKEYLR 747
            G+ +GD  P+F+ +T +G     +D+IG D+W I+FSHP DFTPVCTTEL +     PEF+KR VKL+GLSCD  +SH +W+ DI A              G K+ +PIIAD NR +  +L M+DPDE+D +G  L +R + I+GP+  +KLS LYPA+TGRN DE++R +DSLQ      VATP +WK GD           +AK+ F +   T++LPS K YLR
Sbjct:    4 GILLGDKFPDFRAETNEGFIPSFYDWIGKDSWAILFSHPRDFTPVCTTELARLVQLAPEFNKRNVKLIGLSCDSAESHRKWVDDIMAVCKMKCNDGDTCCSGNKLPFPIIADENRFLATELGMMDPDERDENGNALTARCVFIIGPEKTLKLSILYPATTGRNFDEILRVVDSLQLTAVKLVATPVDWKDGDDCVVLPTIDDTEAKKLFGEKINTIELPSGKHYLR 229          
The following BLAST results are available for this feature:
BLAST of CX675403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
REHY_TORRU1.516e-7262.14Probable 1-Cys peroxiredoxin OS=Tortula ruralis PE... [more]
PRDX6_CHICK6.820e-6554.09Peroxiredoxin-6 OS=Gallus gallus GN=PRDX6 PE=2 SV=... [more]
PRDX6_HUMAN1.738e-6051.38Peroxiredoxin-6 OS=Homo sapiens GN=PRDX6 PE=1 SV=3[more]
PRDX6_BOVIN2.965e-6050.92Peroxiredoxin-6 OS=Bos taurus GN=PRDX6 PE=1 SV=3[more]
PRDX6_RAT5.058e-6050.92Peroxiredoxin-6 OS=Rattus norvegicus GN=Prdx6 PE=1... [more]
PRDX6_PONAB1.472e-5950.92Peroxiredoxin-6 OS=Pongo abelii GN=PRDX6 PE=2 SV=3[more]
PRDX6_PIG2.510e-5950.46Peroxiredoxin-6 OS=Sus scrofa GN=PRDX6 PE=2 SV=3[more]
PRDX6_MACFA2.510e-5950.46Peroxiredoxin-6 OS=Macaca fascicularis GN=PRDX6 PE... [more]
PRDX6_MOUSE5.592e-5950.92Peroxiredoxin-6 OS=Mus musculus GN=Prdx6 PE=1 SV=3[more]
1CPX_DIRIM4.147e-5446.461-Cys peroxiredoxin OS=Dirofilaria immitis PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A07-B14-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675403 ID=CX675403; Name=CX675403; organism=Citrus sinensis; type=EST; length=758bp
TTTTTTTTTATTGTATAATATATCAACGAACGTATATGACATGCATGGTC
AACTATTTATCTATTGCTTAGCTAAATGGAAACTGGTGAAGCTTTAGACA
TTGGTGAAACGCAAGTACTCTTTCTTGGATGGAAGATCCACAGTCTCAAA
ACCTTGAGGGAACGTCTCTTTGGCTTGATCACTAGACACACTTGGTGATA
TCACCACCGGATCTCCCTGCTTCCAGTTTGCAGGCGTTGCAACCTTATGC
TTCAGTGCCTTCTGCAGAGAGTCCAATGCCCTTACTACTTCATCCATGTT
CCGGCCAGTCGACGCCGGGTAAAGAAAGCTCAGTTTCACCTGATGATCAG
GGCCCACGATATGAAGGGCTCGAGAAGGGAGCTGCTTTCCTGATGAATCT
TTTTCATCCGGGTCCACCATGTTGAGTTGCTTGATGATCTCTCGATTGGG
ATCTGCGATGATCGGATATGAGACCTTGCAACCAGGTGTGTAGGCTTCAA
TGTCTTTGATCCACTCATTGTGTGACTTAACGTCATCACAGGACAAACCC
AGAAGCTTCACTTCTCTCTTATCAAACTCTGGAACATAAGCTGCCCTCTT
GCCAAGTTCAGTTGTGCACACAGGAGTGAAATCACCTGGGTGAGAGAAGA
TAATGGTCCAGTTATCACCGATGAAGTCATGAAGCTTAAAGTTTCCTTGA
GTGGTTTGGACTTGAAAGTTGGGAACACAATCTCCAATTGTGAGGCCAGG
CATTTTGA
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