CX675403

Overview
NameCX675403
Unique NameCX675403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4345 contig Csv1_Contig4345:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: TDXH_PYRHO (Probable peroxiredoxin OS=Pyrococcus horikoshii GN=PH1217 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.011e-25
Identity = 65/180 (36.11%), Postives = 99/180 (55.00%), Query Frame = -3
Query:  211 LTIGDCVPNFQVQTTQGNFKLHDFIGDN--WTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 744
            + IG+  P  +V+TT G  KL D+      W I+FSHP DFTPVCTTE       V EF K  V+ +GLS D V SH +WI+ I+      ++ +P+IAD   E+ ++L M+       SG  + +RA+ +V     ++    YPA  GR+ DE++R + +L+ + +  VA P  W   +
Sbjct:    2 VVIGEKFPEVEVKTTHGVIKLPDYFTKQGKWFILFSHPADFTPVCTTEFYGMQKRVEEFRKLGVEPIGLSVDQVFSHIKWIEWIKD-NLSVEIDFPVIADDRGELAEKLGMI------PSGATITARAVFVVDDKGIIRAIVYYPAEVGRDWDEILRLVKALKISTEKGVALPHKWPNNE 174          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: TDXH_METTM (Probable peroxiredoxin OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.177e-24
Identity = 65/172 (37.79%), Postives = 92/172 (53.49%), Query Frame = -3
Query:  223 IGDCVPNFQVQTTQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANW 738
            IGD  P  +VQTT G  KL       W I+FSHP DFTPVCTTE        PE  + + +L+GLS D V SH +WI+ IE      ++ +P+IAD  R +   L ++ P    ++      RA+ +V P+  ++    YP   GRN+ E+VR + + +      VA PANW
Sbjct:    4 IGDKFPEMEVQTTHGLMKLPAEFKGRWFILFSHPADFTPVCTTEFVAFQEVYPELRELDCELVGLSVDQVFSHIKWIEWIEE-NLDTEIEFPVIADTGR-VADTLGLIHPARPTNT-----VRAVFVVDPEGIIRAILYYPQELGRNIPEIVRMIRAFRVIDAEGVAAPANW 168          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: TDXH_PYRAB (Probable peroxiredoxin OS=Pyrococcus abyssi GN=PYRAB10420 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.537e-24
Identity = 65/180 (36.11%), Postives = 100/180 (55.56%), Query Frame = -3
Query:  211 LTIGDCVPNFQVQTTQGNFKLHDFIGDN--WTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 744
            + IG+  P  +V+TT G  KL D       W I+FSHP DFTPVCTTE       + EF K  V+ +GLS D V +H +W++ I+    G ++ +PIIAD   E+ ++L M+       SG  + +RA+ IV     ++    YPA  GR+ DE++R + +L+ + ++ VA P  W   +
Sbjct:    2 VVIGEKFPEVEVKTTHGVIKLPDHFTKQGKWFILFSHPADFTPVCTTEFYGMQKRLEEFRKLGVEPIGLSVDQVFAHIKWMEWIKE-NLGVEIEFPIIADDRGELAEKLGMI------PSGATITARAVFIVDDKGIIRAIVYYPAEVGRDWDEILRLVKALKISTENGVALPHKWPNNE 174          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: TDXH_METVS (Probable peroxiredoxin OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0492 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.537e-24
Identity = 66/178 (37.08%), Postives = 97/178 (54.49%), Query Frame = -3
Query:  211 IGDCVPNFQVQTTQGNFKL--HDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 738
            IG+  P+ ++ TT G  KL  H      W ++FSHPGDFTPVCTTE         +F +   +L+GLS D V SH +W++ I+       + +PIIAD   ++  +L M+ P +  ++      RA+ +V     ++    YP   GRNMDEVVR + +LQ A K   ATPA+W   +
Sbjct:    4 IGEKFPDVELLTTHGKLKLPEHFIEAGKWFVLFSHPGDFTPVCTTEFVAFQKRYDQFRELNTELIGLSIDQVFSHIKWVEWIKEKL-DVDIEFPIIADERGDLAVKLGMISPFKGSNT-----VRAVFVVDATGTIRAIIYYPQEVGRNMDEVVRLVKALQTADK-GYATPADWPNNE 174          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: TDXH_PYRKO (Probable peroxiredoxin OS=Pyrococcus kodakaraensis GN=TK0537 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.008e-24
Identity = 63/180 (35.00%), Postives = 101/180 (56.11%), Query Frame = -3
Query:  211 LTIGDCVPNFQVQTTQGNFKLHDFIGDN--WTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 744
            + IG+  P  +V+TT G  KL D+  +   W ++FSHP DFTPVCTTE       V +F +  V+ +GLS D V SH +W++ I+    G ++++P+IAD   E+  +L M+       SG  + +RA+ IV     ++    YPA  GR+ DE++R + +L+ + +  VA P  W   +
Sbjct:    2 VVIGEKFPEVEVKTTHGVIKLPDYFAEQGKWFVLFSHPADFTPVCTTEFYAMQKRVDQFRELGVEPIGLSVDQVFSHIKWMEWIKE-NLGEEITFPVIADDRGELADKLGMI------PSGATITARAVFIVDDKGIIRAIVYYPAEVGRDWDEILRLVKALKVSDEKGVALPHKWPNNE 174          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: TDXH_PYRFU (Probable peroxiredoxin OS=Pyrococcus furiosus GN=PF1033 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.786e-23
Identity = 66/199 (33.17%), Postives = 104/199 (52.26%), Query Frame = -3
Query:  166 LTIGDCVPNFQVQTTQGNFKLHDFIGDN--WTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQ----GDXXXXXXXXXSDQAKE 744
            + IG+  P  +V+TT G  KL D       W ++FSHP DFTPVCTTE       + +F +  V+ +GLS D V SH +W++ I+    G ++ +P+IAD   ++ ++L M+       SG  + +RA+ IV     ++    YPA  GR+ DE++R + +L+ + +  VA P  W      GD          +Q KE
Sbjct:    2 IVIGEKFPEVEVKTTHGVIKLPDHFTKQGKWFMLFSHPADFTPVCTTEFYGLQIRLEKFRELGVEPIGLSVDQVFSHLKWMEWIKEKL-GVEIEFPVIADDRGDLAEKLGMI------PSGSTITARAVFIVDDKGIIRAIVYYPAEVGRDWDEILRLVKALKISTEKGVALPHKWPNNELIGDKVIVPPASSVEQIKE 193          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: TDXH_AERPE (Probable peroxiredoxin OS=Aeropyrum pernix GN=APE_2278 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.454e-22
Identity = 69/209 (33.01%), Postives = 101/209 (48.33%), Query Frame = -3
Query:  151 MPGLT--IGDCVPNFQVQTTQGNFKLHDFIGDN--WTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQ----GDXXXXXXXXXSDQAKETFPQG 753
            MPG    IG+  P  +V T  G  KL D       W ++FSHP DFTPVCTTE    A    +F +  V L+GLS D V SH +W + IE +  G ++ +PIIADP   + ++L ++  +    +      R + IV     ++    YP   GR +DE++R + +L+     K A PA+W      G+          DQA+     G
Sbjct:    1 MPGSIPLIGERFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHI-GVRIPFPIIADPQGTVARRLGLLHAESATHT-----VRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNNEIIGEGLIVPPPTTEDQARARMESG 203          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: BAS1_HORVU (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Hordeum vulgare GN=BAS1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.150e-18
Identity = 55/180 (30.56%), Postives = 90/180 (50.00%), Query Frame = -3
Query:  211 IGDCVPNFQVQTTQG----NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 738
            +G+  P+F  +        N KL D+IG  + I+F +P DFT VC TE+   +    EF+K   ++LG+S D V SH  W++          + YP+++D  + I K   ++ PD+       +  R L I+  +  ++ S +     GR++DE +R L +LQ   K     PA WK G+
Sbjct:   20 VGNKAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHEEFEKINTEILGVSVDSVFSHLAWVQTERKSGGLGDLKYPLVSDVTKSISKSFGVLIPDQ------GIALRGLFIIDKEGVIQHSTINNLGIGRSVDETLRTLQALQYVKKPDEVCPAGWKPGE 193          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: BAS1_WHEAT (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Triticum aestivum GN=TSA PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.667e-18
Identity = 55/180 (30.56%), Postives = 90/180 (50.00%), Query Frame = -3
Query:  211 IGDCVPNFQVQTTQG----NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 738
            +G+  P+F  +        N KL D+IG  + I+F +P DFT VC TE+   +    EF+K   ++LG+S D V SH  W++          + YP+++D  + I K   ++ PD+       +  R L I+  +  ++ S +     GR++DE +R L +LQ   K     PA WK G+
Sbjct:   20 VGNKAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHEEFEKINTEILGVSVDSVFSHLAWVQTERKSGGLGDLKYPLVSDVTKSISKSFGVLIPDQ------GIALRGLFIIDKEGVIQHSTINNLGIGRSVDETLRTLRALQYVKKPDEVCPAGWKPGE 193          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: BAS1_ORYSJ (2-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BAS1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.169e-18
Identity = 56/181 (30.94%), Postives = 91/181 (50.28%), Query Frame = -3
Query:  211 IGDCVPNFQVQTTQG----NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKH-KVATPANWKQGD 738
            +G+  P+F  +        N KL D+IG  + I+F +P DFT VC TE+   +    EF+K   ++LG+S D V SH  W++          + YP+I+D  + I K   ++ PD+       +  R L I+  +  ++ S +   + GR++DE +R L +LQ    +     PA WK GD
Sbjct:   70 VGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEFEKLNTEILGVSIDSVFSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQ------GIALRGLFIIDKEGVIQHSTINNLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPGD 244          
The following BLAST results are available for this feature:
BLAST of CX675403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
TDXH_PYRHO9.011e-2536.11Probable peroxiredoxin OS=Pyrococcus horikoshii GN... [more]
TDXH_METTM1.177e-2437.79Probable peroxiredoxin OS=Methanobacterium thermoa... [more]
TDXH_PYRAB1.537e-2436.11Probable peroxiredoxin OS=Pyrococcus abyssi GN=PYR... [more]
TDXH_METVS1.537e-2437.08Probable peroxiredoxin OS=Methanococcus vannielii ... [more]
TDXH_PYRKO2.008e-2435.00Probable peroxiredoxin OS=Pyrococcus kodakaraensis... [more]
TDXH_PYRFU3.786e-2333.17Probable peroxiredoxin OS=Pyrococcus furiosus GN=P... [more]
TDXH_AERPE2.454e-2233.01Probable peroxiredoxin OS=Aeropyrum pernix GN=APE_... [more]
BAS1_HORVU2.150e-1830.562-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
BAS1_WHEAT3.667e-1830.562-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
BAS1_ORYSJ8.169e-1830.942-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A07-B14-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675403 ID=CX675403; Name=CX675403; organism=Citrus sinensis; type=EST; length=758bp
TTTTTTTTTATTGTATAATATATCAACGAACGTATATGACATGCATGGTC
AACTATTTATCTATTGCTTAGCTAAATGGAAACTGGTGAAGCTTTAGACA
TTGGTGAAACGCAAGTACTCTTTCTTGGATGGAAGATCCACAGTCTCAAA
ACCTTGAGGGAACGTCTCTTTGGCTTGATCACTAGACACACTTGGTGATA
TCACCACCGGATCTCCCTGCTTCCAGTTTGCAGGCGTTGCAACCTTATGC
TTCAGTGCCTTCTGCAGAGAGTCCAATGCCCTTACTACTTCATCCATGTT
CCGGCCAGTCGACGCCGGGTAAAGAAAGCTCAGTTTCACCTGATGATCAG
GGCCCACGATATGAAGGGCTCGAGAAGGGAGCTGCTTTCCTGATGAATCT
TTTTCATCCGGGTCCACCATGTTGAGTTGCTTGATGATCTCTCGATTGGG
ATCTGCGATGATCGGATATGAGACCTTGCAACCAGGTGTGTAGGCTTCAA
TGTCTTTGATCCACTCATTGTGTGACTTAACGTCATCACAGGACAAACCC
AGAAGCTTCACTTCTCTCTTATCAAACTCTGGAACATAAGCTGCCCTCTT
GCCAAGTTCAGTTGTGCACACAGGAGTGAAATCACCTGGGTGAGAGAAGA
TAATGGTCCAGTTATCACCGATGAAGTCATGAAGCTTAAAGTTTCCTTGA
GTGGTTTGGACTTGAAAGTTGGGAACACAATCTCCAATTGTGAGGCCAGG
CATTTTGA
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