CX675403

Overview
NameCX675403
Unique NameCX675403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4345 contig Csv1_Contig4345:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: YKUU_BACSU (Thioredoxin-like protein ykuU OS=Bacillus subtilis GN=ykuU PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.541e-16
Identity = 50/181 (27.62%), Postives = 91/181 (50.28%), Query Frame = -3
Query:  214 IGDCVPNFQVQTTQ-----GNFKLHDFI-GDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 738
            +G   P F+++        G   L + +  D WT++F +P DFT VC TE+   +    EF+  + +++G+S D + +H  WI          ++ YP+ AD N E+ ++  ++  +E       +  R L I+ P+ +++   ++  + GR++DE +R L +LQ         PANWK G
Sbjct:    6 VGKQAPRFEMEAVLASKEFGKVSLEENMKNDKWTVLFFYPMDFTFVCPTEITAMSDRYDEFEDLDAEVIGVSTDTIHTHLAWINTDRKENGLGQLKYPLAADTNHEVSREYGVLIEEE------GVALRGLFIINPEGELQYQTVFHNNIGRDVDETLRVLQALQTG----GLCPANWKPG 176          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: BAS1_SPIOL (2-Cys peroxiredoxin BAS1, chloroplastic OS=Spinacia oleracea GN=BAS1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.012e-16
Identity = 53/180 (29.44%), Postives = 89/180 (49.44%), Query Frame = -3
Query:  211 IGDCVPNFQVQTTQGN----FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 738
            +G+  P+F+ +          KL D+IG  + I+F +P DFT VC TE+   +    EF+K   ++LG+S D V SH  W++          ++YP+I+D  + I K   ++  D+       +  R L I+  +  ++ S +     GR++DE +R L +LQ         PA WK G+
Sbjct:   75 VGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQ------GIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYTGNPDEVCPAGWKPGE 248          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: BAS1B_ARATH (2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Arabidopsis thaliana GN=At5g06290 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.628e-16
Identity = 52/181 (28.73%), Postives = 92/181 (50.83%), Query Frame = -3
Query:  211 IGDCVPNFQVQTTQGN----FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKH-KVATPANWKQGD 738
            +G+  P+F+ +          KL ++IG  + I+F +P DFT VC TE+   +    EF+K   ++LG+S D V SH  W++          ++YP+++D  + I K   ++ PD+       +  R L I+  +  ++ S +     GR++DE +R L +LQ   ++     PA WK G+
Sbjct:   80 VGNKAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRYEEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDITKSISKSFGVLIPDQ------GIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYVQENPDEVCPAGWKPGE 254          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: TDX1_BRUMA (Thioredoxin peroxidase 1 OS=Brugia malayi GN=TSA1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.483e-16
Identity = 54/172 (31.40%), Postives = 84/172 (48.84%), Query Frame = -3
Query:  223 PNFQ-VQTTQGNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGC-KVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANW 723
            P+F       G+FK   + D+ G  W I+F +P DFT VC TE+   +    EF K   +L+  SCD   SH  WI+   +   G   +  P++AD N++I     ++D +        +  R L ++ P  +++ S +   S GR++DE  R L + Q   KH    PANW
Sbjct:   40 PDFSGTAVVNGDFKTISMKDYKG-KWLILFFYPLDFTFVCPTEITAFSDRCAEFQKLNTELIACSCDSHFSHLAWIQTPRSEVGGLGDMKIPVLADFNKDIANAFGVLDHE------TGISYRGLFLIDPSGEIRHSLVNDLSVGRSVDEAFRTLKAFQFVEKHGEVCPANW 204          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: BAS1A_ARATH (2-Cys peroxiredoxin BAS1, chloroplastic OS=Arabidopsis thaliana GN=BAS1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.304e-15
Identity = 53/181 (29.28%), Postives = 91/181 (50.28%), Query Frame = -3
Query:  211 IGDCVPNFQVQTTQGN----FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKH-KVATPANWKQGD 738
            +G+  P+F+ +          KL D+IG  + I+F +P DFT VC TE+   +    EF+K   ++LG+S D V SH  W++          ++YP+I+D  + I K   ++  D+       +  R L I+  +  ++ S +     GR++DE +R L +LQ   ++     PA WK G+
Sbjct:   75 VGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQ------GIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYIQENPDEVCPAGWKPGE 249          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: TSAA_BUCBP (Probable peroxiredoxin OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=bbp_171 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.104e-14
Identity = 47/161 (29.19%), Postives = 80/161 (49.69%), Query Frame = -3
Query:  211 NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 693
            NF   +F  +  +I+F  P DFT VC +E+      + +F KR VKL+G+S D V  H+ W   +       K+++ +++D  REI +   +  P         +  RA  ++  +  ++   +     GRN+ E +R +D+L    K+    PANWK+GD
Sbjct:   25 NFNFKEFTNNQTSILFFWPMDFTFVCPSEIIAFNQELSKFKKRNVKLIGVSIDSVYVHHAWRNTLSHNGQIDKINFTMVSDLKREIQRSYGIEHPQ------LGVALRATFLIDKNRIIRHQTINDLPFGRNISETLRMIDALHFYEKYGEVCPANWKKGD 179          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: R20K_CLOPA (Putative peroxiredoxin in rubredoxin operon OS=Clostridium pasteurianum PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.104e-14
Identity = 55/183 (30.05%), Postives = 93/183 (50.82%), Query Frame = -3
Query:  211 IGDCVPNFQVQTTQGN------FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWI-KDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 738
            +G   P F+++  +G+       KL D+ G  W ++F +P DFT VC TE+   +    EF   + +LL +SCD   SH  WI +DI+    G K+++PI +D   E+  +  +   +E       +  R L I+ P+  V+ S ++  + GR++DE +R L    KA +       +W +GD
Sbjct:    5 VGKPAPEFEMKAVKGDGRGFTEVKLGDYKG-KWLVMFFYPLDFTFVCPTEITGFSKRAEEFRDLKAELLAVSCDSQYSHETWINQDIKQGGLG-KINFPIASDKTTEVSTKYGIQIEEE------GISLRGLFIIDPEGIVRYSVVHDLNVGRSVDETLRVL----KAFQTGGMCALDWHEGD 175          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: TSAA_BUCAP (Probable peroxiredoxin OS=Buchnera aphidicola subsp. Schizaphis graminum GN=BUsg_176 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.196e-14
Identity = 46/160 (28.75%), Postives = 77/160 (48.12%), Query Frame = -3
Query:  214 NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 693
            NF L  +     T++F  P DFT VC +E+ +       F+KR VK++G+S D V  H  W           K+ +P+++D   EI K  ++  P+        +  RA  ++  +  ++   +     GRN+DE++R +D+L    K+    P NWK G
Sbjct:   25 NFDLKKYSNGQITVLFFWPMDFTFVCPSEIIEFNKTFEAFEKRNVKIVGVSIDSVFVHQAWQNTFPENGGIGKIKFPMVSDIKHEIQKSYHIEHPE------LNIALRASFLIDENWIIRHQVVNDLPFGRNIDEMIRMIDALNFHNKYGEVCPVNWKHG 178          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: TDX_TRYBR (Thioredoxin peroxidase OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.157e-14
Identity = 51/164 (31.10%), Postives = 81/164 (49.39%), Query Frame = -3
Query:  214 GNFKLHDFIG--DNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGC-KVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 696
            G FK  D       W ++F +P DFT VC TE+ + +  V EF+  + +++  S D   SH  W  ++E    G   ++ PI+AD  + I+K   ++    K+  G  +  R L I+ P   ++   +     GRN+DE +R + + Q   KH    PANWK G
Sbjct:   24 GTFKKVDLASYRGKWVVLFFYPLDFTFVCPTEICQFSDRVKEFNDVDCEVIACSMDSEFSHLAWT-NVERKKGGLGTMNIPILADKTKSIMKAYGVL----KEEDG--VAYRGLFIIDPQQNLRQITINDLPVGRNVDETLRLVKAFQFVEKHGEVCPANWKPG 180          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: YCF42_PORPU (Putative peroxiredoxin ycf42 OS=Porphyra purpurea GN=ycf42 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 57/184 (30.98%), Postives = 91/184 (49.46%), Query Frame = -3
Query:  211 LTIGDCVPNFQVQTTQGN----FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIK-DIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKH-KVATPANWKQGD 744
            L +G   P+F             KL DF  + + I+F +P DFT VC TE+   +    +F +   ++LG+S D   SH  W++ D E+   G  + YP+++D  +EI    N++     +S G  L  R L I+ P   ++ S +     GR+++E +R L ++Q    H     PANWK GD
Sbjct:    8 LQVGQIAPDFSATAVYDQEFKTIKLSDF-KNKYVILFFYPLDFTFVCPTEITAFSDKYSDFSELNTEILGVSVDSEYSHLAWLQTDRESGGLG-DLEYPLVSDLKKEISIAYNVL-----NSGGVAL--RGLFIIDPKGIIQYSTVNNLEFGRSVEETLRVLQAIQYVQAHPDEVCPANWKPGD 182          
The following BLAST results are available for this feature:
BLAST of CX675403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
YKUU_BACSU1.541e-1627.62Thioredoxin-like protein ykuU OS=Bacillus subtilis... [more]
BAS1_SPIOL2.012e-1629.442-Cys peroxiredoxin BAS1, chloroplastic OS=Spinaci... [more]
BAS1B_ARATH2.628e-1628.732-Cys peroxiredoxin BAS1-like, chloroplastic OS=Ar... [more]
TDX1_BRUMA4.483e-1631.40Thioredoxin peroxidase 1 OS=Brugia malayi GN=TSA1 ... [more]
BAS1A_ARATH1.304e-1529.282-Cys peroxiredoxin BAS1, chloroplastic OS=Arabido... [more]
TSAA_BUCBP1.104e-1429.19Probable peroxiredoxin OS=Buchnera aphidicola subs... [more]
R20K_CLOPA1.104e-1430.05Putative peroxiredoxin in rubredoxin operon OS=Clo... [more]
TSAA_BUCAP4.196e-1428.75Probable peroxiredoxin OS=Buchnera aphidicola subs... [more]
TDX_TRYBR7.157e-1431.10Thioredoxin peroxidase OS=Trypanosoma brucei rhode... [more]
YCF42_PORPU9.347e-1430.98Putative peroxiredoxin ycf42 OS=Porphyra purpurea ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A07-B14-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675403 ID=CX675403; Name=CX675403; organism=Citrus sinensis; type=EST; length=758bp
TTTTTTTTTATTGTATAATATATCAACGAACGTATATGACATGCATGGTC
AACTATTTATCTATTGCTTAGCTAAATGGAAACTGGTGAAGCTTTAGACA
TTGGTGAAACGCAAGTACTCTTTCTTGGATGGAAGATCCACAGTCTCAAA
ACCTTGAGGGAACGTCTCTTTGGCTTGATCACTAGACACACTTGGTGATA
TCACCACCGGATCTCCCTGCTTCCAGTTTGCAGGCGTTGCAACCTTATGC
TTCAGTGCCTTCTGCAGAGAGTCCAATGCCCTTACTACTTCATCCATGTT
CCGGCCAGTCGACGCCGGGTAAAGAAAGCTCAGTTTCACCTGATGATCAG
GGCCCACGATATGAAGGGCTCGAGAAGGGAGCTGCTTTCCTGATGAATCT
TTTTCATCCGGGTCCACCATGTTGAGTTGCTTGATGATCTCTCGATTGGG
ATCTGCGATGATCGGATATGAGACCTTGCAACCAGGTGTGTAGGCTTCAA
TGTCTTTGATCCACTCATTGTGTGACTTAACGTCATCACAGGACAAACCC
AGAAGCTTCACTTCTCTCTTATCAAACTCTGGAACATAAGCTGCCCTCTT
GCCAAGTTCAGTTGTGCACACAGGAGTGAAATCACCTGGGTGAGAGAAGA
TAATGGTCCAGTTATCACCGATGAAGTCATGAAGCTTAAAGTTTCCTTGA
GTGGTTTGGACTTGAAAGTTGGGAACACAATCTCCAATTGTGAGGCCAGG
CATTTTGA
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