CX675403

Overview
NameCX675403
Unique NameCX675403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4345 contig Csv1_Contig4345:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: YCF42_PORYE (Putative peroxiredoxin ycf42 OS=Porphyra yezoensis GN=ycf42 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.594e-13
Identity = 54/184 (29.35%), Postives = 90/184 (48.91%), Query Frame = -3
Query:  211 LTIGDCVPNFQVQTTQGN----FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIK-DIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKH-KVATPANWKQGD 744
            L +G   P+F             KL D + + + ++F +P DFT VC TE+   +     F +   ++LG+S D   SH  W++ D E+   G  +SYP+++D  +EI    N+++ D        +  R L I+ P   ++ S +     GR+++E +R L ++Q    H     PANWK GD
Sbjct:    8 LRVGQLAPDFSATAVYDQEFKTLKLSD-LKNKYIVLFFYPLDFTFVCPTEITAFSDKYNAFSELNTEVLGVSVDSEYSHLAWLQTDRESGGLG-DLSYPLVSDLKKEISAAYNVLNSD-------GVALRGLFIIDPKGIIQYSTINNLEFGRSVEETLRVLQAIQYVQSHPDEVCPANWKPGD 182          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: TSAA_HELPJ (Probable peroxiredoxin OS=Helicobacter pylori J99 GN=tsaA PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 49/178 (27.53%), Postives = 88/178 (49.44%), Query Frame = -3
Query:  211 PNFQVQTTQGN------FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGC-KVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 723
            P+F+     GN      F+L   +G N  I+F  P DFT VC TE+      V +F ++   ++G+S D  + H  W K+      G  +VS+P++AD  + I +  +++  +        +  R   ++  + +V+ + +     GRN DE++R +D+L    +H    PA W++GD
Sbjct:    8 PDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAW-KNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEE-------AIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGD 177          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: Y755_SYNY3 (Putative peroxiredoxin sll0755 OS=Synechocystis sp. (strain PCC 6803) GN=sll0755 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 49/183 (26.78%), Postives = 91/183 (49.73%), Query Frame = -3
Query:  211 LTIGDCVPNFQ----VQTTQGNFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKH-KVATPANWKQGD 744
            L +G   P+F     V  +    KL  + G  + ++F +P DFT VC TE+   +    EF   + +++G+S D   SH  WI+          ++YP+++D  +EI +  N+++PD        +  R L I+  +  ++ + +   S GR++DE +R L +++    H     P +W++GD
Sbjct:    5 LRVGQPAPDFTATAIVDQSFQTVKLSTYRG-KYLVLFFYPLDFTFVCPTEIIAFSDRHSEFTALDTEVVGISVDSEFSHLAWIQTERKMGGIGNINYPLVSDLKKEISQAYNVLEPD------AGIALRGLFIIDREGILQYATVNNLSFGRSVDETLRVLKAIRHVQSHPNEVCPVDWQEGD 180          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: TSAA_HELPY (Probable peroxiredoxin OS=Helicobacter pylori GN=tsaA PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 48/178 (26.97%), Postives = 88/178 (49.44%), Query Frame = -3
Query:  211 PNFQVQTTQGN------FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGC-KVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 723
            P+F+     GN      F+L   +G N  I+F  P DFT VC TE+      V +F ++   ++G+S D  + H  W K+      G  +V++P++AD  + I +  +++  +        +  R   ++  + +V+ + +     GRN DE++R +D+L    +H    PA W++GD
Sbjct:    8 PDFKAPAVLGNNEVDEHFELSKNLGKNGAILFFWPKDFTFVCPTEIIAFDKRVKDFQEKGFNVIGVSIDSEQVHFAW-KNTPVEKGGIGQVTFPMVADITKSISRDYDVLFEE-------AIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWRKGD 177          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: TSAA_BUCAI (Probable peroxiredoxin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=BU182 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 44/160 (27.50%), Postives = 78/160 (48.75%), Query Frame = -3
Query:  211 FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQGD 690
            F L  +     T++F  P DFT VC +E+ +      EF KR VK++G+S D V  H  W   +       K+++P+++D   +I K   +  P+        +  RA  ++  +  ++   +     GRN+ +++R +D+L    K     PANWK+G+
Sbjct:   26 FDLKKYSNGQSTVLFFWPMDFTFVCPSEIIEFNKLHSEFKKRNVKIVGVSIDSVYVHQAWQNTLPKNGGIGKINFPMVSDVKHDIQKSYGIQHPN------LGIALRASFLIDSNWIIRHQVVNDLPFGRNITDMIRMVDALDFHNKFGEVCPANWKKGE 179          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: PRDX1_MOUSE (Peroxiredoxin-1 OS=Mus musculus GN=Prdx1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 52/180 (28.89%), Postives = 82/180 (45.56%), Query Frame = -3
Query:  214 IGDCVPNFQVQTTQ--GNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 738
            IG   PNF+       G FK   L ++ G  + + F +P DFT VC TE+   +    EF K   +++G S D    H  WI   +       ++ P+I+DP R I +   ++  DE       +  R L I+     ++   +     GR++DE++R + + Q   KH    PA WK G
Sbjct:    8 IGYPAPNFKATAVMPDGQFKDISLSEYKG-KYVVFFFYPLDFTFVCPTEIIAFSDRADEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADE------GISFRGLFIIDDKGILRQITINDLPVGRSVDEIIRLVQAFQFTDKHGEVCPAGWKPG 180          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: PRDX_ASCSU (Peroxiredoxin OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12
Identity = 53/179 (29.61%), Postives = 82/179 (45.81%), Query Frame = -3
Query:  214 IGDCVPNFQVQTT-QGNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 738
            IG   P F       G+FK   L D+ G  + ++F +P DFT VC TE+   + +V EF K  V++L  S D   SH  WI          ++  PII+D N +I +   ++  D+       +  R L I+ P   ++   +     GR++ E +R + + Q   KH    PA W  G
Sbjct:    6 IGKPAPEFTATAVVDGDFKSISLSDYKG-KYVVLFFYPMDFTFVCPTEIIAFSEHVGEFKKLGVEVLAASTDSQFSHLAWINTPRKQGGLGEMKIPIISDNNHQISRDYGVLKEDD------GIAYRGLFIIDPKGILRQITVNDLPVGRSVTETLRLVQAFQFVDKHGEVCPAGWTPG 177          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: PRDX1_RAT (Peroxiredoxin-1 OS=Rattus norvegicus GN=Prdx1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 51/180 (28.33%), Postives = 82/180 (45.56%), Query Frame = -3
Query:  214 IGDCVPNFQVQTTQ--GNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 738
            IG   P+F+       G FK   L D+ G  + + F +P DFT VC TE+   +    EF K   +++G S D    H  WI   +       ++ P+++DP R I +   ++  DE       +  R L I+     ++   +     GR++DE++R + + Q   KH    PA WK G
Sbjct:    8 IGHPAPSFKATAVMPDGQFKDISLSDYKG-KYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADE------GISFRGLFIIDDKGILRQITINDLPVGRSVDEILRLVQAFQFTDKHGEVCPAGWKPG 180          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: PRDX1_MYOLU (Peroxiredoxin-1 OS=Myotis lucifugus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 52/180 (28.89%), Postives = 81/180 (45.00%), Query Frame = -3
Query:  214 IGDCVPNFQVQTTQ--GNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 738
            IG   PNF+       G FK   L D+ G  + + F +P DFT VC TE+   +    EF K   +++G S D    H  WI   +       ++ P+++DP R I +   ++  DE       +  R L I+     ++   +     GR++DE +R + + Q   KH    PA WK G
Sbjct:    8 IGHPAPNFKATAVMPDGQFKDISLSDYKG-KYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKINCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADE------GISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 180          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: PRDX1_HUMAN (Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 51/180 (28.33%), Postives = 81/180 (45.00%), Query Frame = -3
Query:  214 IGDCVPNFQVQTTQ--GNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 738
            IG   PNF+       G FK   L D+ G  + + F +P DFT VC TE+   +    EF K   +++G S D    H  W+   +       ++ P+++DP R I +   ++  DE       +  R L I+     ++   +     GR++DE +R + + Q   KH    PA WK G
Sbjct:    8 IGHPAPNFKATAVMPDGQFKDISLSDYKG-KYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADE------GISFRGLFIIDDKGILRQITVNDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 180          
The following BLAST results are available for this feature:
BLAST of CX675403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
YCF42_PORYE1.594e-1329.35Putative peroxiredoxin ycf42 OS=Porphyra yezoensis... [more]
TSAA_HELPJ7.913e-1327.53Probable peroxiredoxin OS=Helicobacter pylori J99 ... [more]
Y755_SYNY31.350e-1226.78Putative peroxiredoxin sll0755 OS=Synechocystis sp... [more]
TSAA_HELPY1.350e-1226.97Probable peroxiredoxin OS=Helicobacter pylori GN=t... [more]
TSAA_BUCAI1.350e-1227.50Probable peroxiredoxin OS=Buchnera aphidicola subs... [more]
PRDX1_MOUSE2.302e-1228.89Peroxiredoxin-1 OS=Mus musculus GN=Prdx1 PE=1 SV=1[more]
PRDX_ASCSU3.007e-1229.61Peroxiredoxin OS=Ascaris suum PE=2 SV=1[more]
PRDX1_RAT3.927e-1228.33Peroxiredoxin-1 OS=Rattus norvegicus GN=Prdx1 PE=1... [more]
PRDX1_MYOLU3.927e-1228.89Peroxiredoxin-1 OS=Myotis lucifugus GN=PRDX1 PE=1 ... [more]
PRDX1_HUMAN3.927e-1228.33Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A07-B14-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675403 ID=CX675403; Name=CX675403; organism=Citrus sinensis; type=EST; length=758bp
TTTTTTTTTATTGTATAATATATCAACGAACGTATATGACATGCATGGTC
AACTATTTATCTATTGCTTAGCTAAATGGAAACTGGTGAAGCTTTAGACA
TTGGTGAAACGCAAGTACTCTTTCTTGGATGGAAGATCCACAGTCTCAAA
ACCTTGAGGGAACGTCTCTTTGGCTTGATCACTAGACACACTTGGTGATA
TCACCACCGGATCTCCCTGCTTCCAGTTTGCAGGCGTTGCAACCTTATGC
TTCAGTGCCTTCTGCAGAGAGTCCAATGCCCTTACTACTTCATCCATGTT
CCGGCCAGTCGACGCCGGGTAAAGAAAGCTCAGTTTCACCTGATGATCAG
GGCCCACGATATGAAGGGCTCGAGAAGGGAGCTGCTTTCCTGATGAATCT
TTTTCATCCGGGTCCACCATGTTGAGTTGCTTGATGATCTCTCGATTGGG
ATCTGCGATGATCGGATATGAGACCTTGCAACCAGGTGTGTAGGCTTCAA
TGTCTTTGATCCACTCATTGTGTGACTTAACGTCATCACAGGACAAACCC
AGAAGCTTCACTTCTCTCTTATCAAACTCTGGAACATAAGCTGCCCTCTT
GCCAAGTTCAGTTGTGCACACAGGAGTGAAATCACCTGGGTGAGAGAAGA
TAATGGTCCAGTTATCACCGATGAAGTCATGAAGCTTAAAGTTTCCTTGA
GTGGTTTGGACTTGAAAGTTGGGAACACAATCTCCAATTGTGAGGCCAGG
CATTTTGA
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