CX675403

Overview
NameCX675403
Unique NameCX675403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4345 contig Csv1_Contig4345:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: TDX1_CAEEL (Probable peroxiredoxin prdx-3 OS=Caenorhabditis elegans GN=prdx-3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 51/174 (29.31%), Postives = 82/174 (47.13%), Query Frame = -3
Query:  217 VPNFQ-VQTTQGNFKL---HDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQ 726
            VP F+      G+FK+    D+ G  W ++F +P DFT VC TE+        EF     +++  SCD   SH  W+           +  P++AD N++I     ++D   K+S    L  R L ++ P   V+ +       GR++DE +R L + Q + KH    PA+W +
Sbjct:   39 VPAFKGTAVVDGDFKVISDQDYKG-KWLVMFFYPLDFTFVCPTEIIAYGDRANEFRSLGAEVVACSCDSHFSHLAWVNTPRKDGGLGDMDIPLLADFNKKIADSFGVLD---KESG---LSYRGLFLIDPSGTVRHTTCNDLPVGRSVDETLRVLKAFQFSDKHGEVCPADWHE 205          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: TDX_FASHE (Thioredoxin peroxidase OS=Fasciola hepatica PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 46/172 (26.74%), Postives = 82/172 (47.67%), Query Frame = -3
Query:  220 PNFQVQTTQGN----FKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWK 723
            PNF  Q   G       L D+ G  W I+  +P DFT VC TE+   +  + +F +R   ++  S D V SH +W K         ++++P++AD N  + +   ++D ++ ++       R   ++ P   ++   +     GR+++E +R LD+     +H    PANWK
Sbjct:    9 PNFSGQAVVGKEFETISLSDYKG-KWVILAFYPLDFTFVCPTEIIAISDQMEQFAQRNCAVIFCSTDSVYSHLQWTKMDRKVGGIGQLNFPLLADKNMSVSRAFGVLDEEQGNT------YRGNFLIDPKGVLRQITVNDDPVGRSVEEALRLLDAFIFHEEHGEVCPANWK 173          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: PRDX1_CRIGR (Peroxiredoxin-1 OS=Cricetulus griseus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 50/180 (27.78%), Postives = 82/180 (45.56%), Query Frame = -3
Query:  214 IGDCVPNFQVQTTQ--GNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 738
            IG   PNF+       G F+   L ++ G  + + F +P DFT VC TE+   +    EF K   +++G S D    H  WI   +       ++ P+++DP R I +   ++  DE       +  R L I+     ++   +     GR++DE++R + + Q   KH    PA WK G
Sbjct:    8 IGYPAPNFKATAVMPDGQFRDICLSEYRG-KYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADE------GISFRGLFIIDDKGILRQITINDLPVGRSVDEILRLVQAFQFTDKHGEVCPAGWKPG 180          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: PRDX1_BOVIN (Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 52/180 (28.89%), Postives = 80/180 (44.44%), Query Frame = -3
Query:  214 IGDCVPNFQVQTTQ--GNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 738
            IG   P F+       G FK   L D+ G  + + F +P DFT VC TE+   +    EF K   +++G S D    H  WI   +       ++ P+I+DP R I +   ++  DE       +  R L I+     ++   +     GR++DE +R + + Q   KH    PA WK G
Sbjct:    8 IGHRAPQFKATAVMPDGQFKDISLADYKG-KYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADE------GISFRGLFIIDDKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 180          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: AHPC_SHIFL (Alkyl hydroperoxide reductase subunit C OS=Shigella flexneri GN=ahpC PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 43/151 (28.48%), Postives = 68/151 (45.03%), Query Frame = -3
Query:  211 WTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHK-VATPANWKQGD 660
            W++ F +P DFT VC TELG  A +  E  K  V +  +S D   +H  W    E      K+ Y +I DP   + +  + +  DE       L  RA  +V P   ++   +     GR+  +++R + + Q    H     PA WK+G+
Sbjct:   33 WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETI---AKIKYAMIGDPTGALTRNFDNMREDE------GLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGE 174          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: AHPC_ECOLI (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli (strain K12) GN=ahpC PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 43/151 (28.48%), Postives = 68/151 (45.03%), Query Frame = -3
Query:  211 WTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHK-VATPANWKQGD 660
            W++ F +P DFT VC TELG  A +  E  K  V +  +S D   +H  W    E      K+ Y +I DP   + +  + +  DE       L  RA  +V P   ++   +     GR+  +++R + + Q    H     PA WK+G+
Sbjct:   33 WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETI---AKIKYAMIGDPTGALTRNFDNMREDE------GLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGE 174          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: AHPC_ECOL6 (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli O6 GN=ahpC PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 43/151 (28.48%), Postives = 68/151 (45.03%), Query Frame = -3
Query:  211 WTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHK-VATPANWKQGD 660
            W++ F +P DFT VC TELG  A +  E  K  V +  +S D   +H  W    E      K+ Y +I DP   + +  + +  DE       L  RA  +V P   ++   +     GR+  +++R + + Q    H     PA WK+G+
Sbjct:   33 WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETI---AKIKYAMIGDPTGALTRNFDNMREDE------GLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGE 174          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: AHPC_ECO57 (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli O157:H7 GN=ahpC PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 43/151 (28.48%), Postives = 68/151 (45.03%), Query Frame = -3
Query:  211 WTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHK-VATPANWKQGD 660
            W++ F +P DFT VC TELG  A +  E  K  V +  +S D   +H  W    E      K+ Y +I DP   + +  + +  DE       L  RA  +V P   ++   +     GR+  +++R + + Q    H     PA WK+G+
Sbjct:   33 WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETI---AKIKYAMIGDPTGALTRNFDNMREDE------GLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGE 174          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: AHPC_SALTY (Alkyl hydroperoxide reductase subunit C OS=Salmonella typhimurium GN=ahpC PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11
Identity = 43/151 (28.48%), Postives = 68/151 (45.03%), Query Frame = -3
Query:  211 WTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHK-VATPANWKQGD 660
            W++ F +P DFT VC TELG  A +  E  K  V +  +S D   +H  W    E      K+ Y +I DP   + +  + +  DE       L  RA  +V P   ++   +     GR+  +++R + + Q    H     PA WK+G+
Sbjct:   33 WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETI---AKIKYAMIGDPTGALTRNFDNMREDE------GLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGE 174          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: AHPC_SALTI (Alkyl hydroperoxide reductase subunit C OS=Salmonella typhi GN=ahpC PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11
Identity = 43/151 (28.48%), Postives = 68/151 (45.03%), Query Frame = -3
Query:  211 WTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHK-VATPANWKQGD 660
            W++ F +P DFT VC TELG  A +  E  K  V +  +S D   +H  W    E      K+ Y +I DP   + +  + +  DE       L  RA  +V P   ++   +     GR+  +++R + + Q    H     PA WK+G+
Sbjct:   33 WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETI---AKIKYAMIGDPTGALTRNFDNMREDE------GLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGE 174          
The following BLAST results are available for this feature:
BLAST of CX675403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
TDX1_CAEEL5.129e-1229.31Probable peroxiredoxin prdx-3 OS=Caenorhabditis el... [more]
TDX_FASHE1.143e-1126.74Thioredoxin peroxidase OS=Fasciola hepatica PE=2 S... [more]
PRDX1_CRIGR1.143e-1127.78Peroxiredoxin-1 OS=Cricetulus griseus GN=PRDX1 PE=... [more]
PRDX1_BOVIN1.143e-1128.89Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1[more]
AHPC_SHIFL1.143e-1128.48Alkyl hydroperoxide reductase subunit C OS=Shigell... [more]
AHPC_ECOLI1.143e-1128.48Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
AHPC_ECOL61.143e-1128.48Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
AHPC_ECO571.143e-1128.48Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
AHPC_SALTY1.492e-1128.48Alkyl hydroperoxide reductase subunit C OS=Salmone... [more]
AHPC_SALTI1.492e-1128.48Alkyl hydroperoxide reductase subunit C OS=Salmone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A07-B14-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675403 ID=CX675403; Name=CX675403; organism=Citrus sinensis; type=EST; length=758bp
TTTTTTTTTATTGTATAATATATCAACGAACGTATATGACATGCATGGTC
AACTATTTATCTATTGCTTAGCTAAATGGAAACTGGTGAAGCTTTAGACA
TTGGTGAAACGCAAGTACTCTTTCTTGGATGGAAGATCCACAGTCTCAAA
ACCTTGAGGGAACGTCTCTTTGGCTTGATCACTAGACACACTTGGTGATA
TCACCACCGGATCTCCCTGCTTCCAGTTTGCAGGCGTTGCAACCTTATGC
TTCAGTGCCTTCTGCAGAGAGTCCAATGCCCTTACTACTTCATCCATGTT
CCGGCCAGTCGACGCCGGGTAAAGAAAGCTCAGTTTCACCTGATGATCAG
GGCCCACGATATGAAGGGCTCGAGAAGGGAGCTGCTTTCCTGATGAATCT
TTTTCATCCGGGTCCACCATGTTGAGTTGCTTGATGATCTCTCGATTGGG
ATCTGCGATGATCGGATATGAGACCTTGCAACCAGGTGTGTAGGCTTCAA
TGTCTTTGATCCACTCATTGTGTGACTTAACGTCATCACAGGACAAACCC
AGAAGCTTCACTTCTCTCTTATCAAACTCTGGAACATAAGCTGCCCTCTT
GCCAAGTTCAGTTGTGCACACAGGAGTGAAATCACCTGGGTGAGAGAAGA
TAATGGTCCAGTTATCACCGATGAAGTCATGAAGCTTAAAGTTTCCTTGA
GTGGTTTGGACTTGAAAGTTGGGAACACAATCTCCAATTGTGAGGCCAGG
CATTTTGA
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