CX675403

Overview
NameCX675403
Unique NameCX675403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4345 contig Csv1_Contig4345:1..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: PRDX1_GECJA (Peroxiredoxin-1 OS=Gecko japonicus GN=PRDX1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 51/180 (28.33%), Postives = 80/180 (44.44%), Query Frame = -3
Query:  214 IGDCVPNFQVQTTQ--GNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 738
            IG   P+FQ       G FK   L D+ G  + ++F +P DFT VC TE+   +    EF K   +++G S D    H  WI   +       +  P+++D  R I K   ++  DE       +  R L I+     ++   +     GR++DE +R + + Q   KH    PA W+ G
Sbjct:    8 IGKLAPDFQATAVMPDGQFKEIKLSDYKG-KYVVLFFYPLDFTFVCPTEIIAFSDRSEEFRKINCEVIGASVDSHFCHLAWINTPKKQGGLGSMHIPLVSDTKRVIAKDYGILKEDE------GISYRGLFIIDDKGTLRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWQPG 180          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: TDX_ECHGR (Thioredoxin peroxidase OS=Echinococcus granulosus GN=TPX PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 53/181 (29.28%), Postives = 83/181 (45.86%), Query Frame = -3
Query:  214 IGDCVPNFQVQT-TQGNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEW--IKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 738
            +G   P+F  +    G  K   L D+ G  + I+F +P DFT VC TE+        EF +R  +LL  S D    H  W  +   E    G ++  P++AD N +I +   ++  D+       +  R L I+     ++   +     GR++DE +R LD+ Q   KH    PANW+ G
Sbjct:    5 VGKLAPSFTCKALVDGELKDVSLSDYRG-KYVILFFYPMDFTFVCPTEIIAFNDRADEFHQRGCQLLACSTDSGYCHLAWNNVSRKEGGVQGMRI--PMLADTNHKISRDYGVLIEDQG------IALRGLFIIDDKGVLRQITINDLPVGRSVDEALRLLDAFQFTDKHGEVCPANWQPG 176          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: PRDX1_DROME (Peroxiredoxin 1 OS=Drosophila melanogaster GN=Jafrac1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 42/160 (26.25%), Postives = 76/160 (47.50%), Query Frame = -3
Query:  214 NFKLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 693
            + KL D+ G  + ++F +P DFT VC TE+   +    EF K   +++G S D   +H  WI           +  P++AD + ++ +   ++D +        +P R L I+     ++   +     GR+++E +R + + Q   K+    PANWK G
Sbjct:   23 DIKLSDYKG-KYLVLFFYPLDFTFVCPTEIIAFSESAAEFRKINCEVIGCSTDSQFTHLAWINTPRKQGGLGSMDIPLLADKSMKVARDYGVLDEE------TGIPFRGLFIIDDKQNLRQITVNDLPVGRSVEETLRLVQAFQYTDKYGEVCPANWKPG 175          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: PRXU_EUBAC (Selenocysteine-containing peroxiredoxin prxU OS=Eubacterium acidaminophilum GN=prxU PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 48/183 (26.23%), Postives = 88/183 (48.09%), Query Frame = -3
Query:  214 LTIGDCVPNFQVQTT-QGNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVA--TPANWKQG 744
            +++G   P+F++    +G FK   L +++G  W ++  +PGDFT V  TE+   A   PEF K  V++L +S D V  H  W  +  +      + +P+++D    +     + DP+        + +R   ++ PD  ++   +     GRN+ E +R + + Q   + K A   P+ WK G
Sbjct:    2 VSVGKKAPDFEMAGFYKGEFKTFRLSEYLG-KWVVLCFYPGDFTFVUATEVSAVAEKYPEFQKLGVEVLSVSVDSVFVHKMWNDNELSKMVEGGIPFPMLSDGGGNVGTLYGVYDPE------AGVENRGRFLIDPDGIIQGYEVLILPVGRNVSETLRQIQAFQLVRETKGAEVAPSGWKPG 177          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: PRDX1_CHICK (Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 51/180 (28.33%), Postives = 78/180 (43.33%), Query Frame = -3
Query:  214 IGDCVPNFQVQTTQ--GNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 738
            IG   P+F        G FK   L D+ G  + + F +P DFT VC TE+   +    EF K   +++G S D    H  WI   +       +  P+++D  R I K   ++  DE       +  R L I+     ++   +     GR++DE +R + + Q   KH    PA WK G
Sbjct:    8 IGKPAPDFTATAVMPDGQFKDIKLSDYRG-KYVVFFFYPLDFTFVCPTEIIAYSDRADEFKKINCEIIGASVDSHFCHLAWINTPKKQGGLGTMKIPLVSDTKRVIAKDYGVLKEDE------GIAYRGLFIIDEKGILRQITINDLPVGRSVDETLRLVQAFQFTDKHGEVCPAGWKPG 180          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: TSA1_SCHPO (Peroxiredoxin tpx1 OS=Schizosaccharomyces pombe GN=tpx1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 49/181 (27.07%), Postives = 84/181 (46.41%), Query Frame = -3
Query:  214 LTIGDCVPNFQ-VQTTQGNF---KLHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 744
            L IG   P+F+      G F   KL D+ G  W  +  +P DFT VC TE+   +    +F +R  +++  S D   SH  +I           ++ P++ADP+ ++ +   ++  D        +  R L ++ P   ++   +     GR++DE +R LD+ Q   +H    PANW +G
Sbjct:    3 LQIGKPAPDFKGTAVVNGAFEEIKLADYKG-KWVFLGFYPLDFTFVCPTEIVAFSEAASKFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAG------VAFRGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWHKG 176          
BLAST of CX675403 vs. ExPASy Swiss-Prot
Match: TDX2_BRUMA (Thioredoxin peroxidase 2 OS=Brugia malayi GN=tsa-2 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 50/179 (27.93%), Postives = 81/179 (45.25%), Query Frame = -3
Query:  214 IGDCVPNFQVQTT-QGNFK---LHDFIGDNWTIIFSHPGDFTPVCTTELGKRAAYVPEFDKREVKLLGLSCDDVKSHNEWIKDIEAYTPGCKVSYPIIADPNREIIKQLNMVDPDEKDSSGKQLPSRALHIVGPDHQVKLSFLYPASTGRNMDEVVRALDSLQKALKHKVATPANWKQG 738
            IG   PNF+      G+FK   L  F G  + ++  +P DFT VC TE+   +  + EF + +V ++  S D   SH  W+          +++ PI+A  N  I +   ++  D+       +  R L I+ P   +    +     GR++DE +R + + Q   KH    PANW  G
Sbjct:   10 IGQPAPNFKTTAVVNGDFKEISLGQFKG-KYVVLLFYPLDFTFVCPTEIIAFSDRIAEFKQLDVAVMACSTDSHFSHLAWVNTDRKMGGLGQMNIPILAYTNHVISRAYGVLKEDD------GIAYRGLFIIDPKGILGQITINDLPVGRSVDETLRLIQAFQFVDKHGEVCPANWHPG 181          
The following BLAST results are available for this feature:
BLAST of CX675403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
PRDX1_GECJA2.545e-1128.33Peroxiredoxin-1 OS=Gecko japonicus GN=PRDX1 PE=2 S... [more]
TDX_ECHGR3.324e-1129.28Thioredoxin peroxidase OS=Echinococcus granulosus ... [more]
PRDX1_DROME3.324e-1126.25Peroxiredoxin 1 OS=Drosophila melanogaster GN=Jafr... [more]
PRXU_EUBAC4.342e-1126.23Selenocysteine-containing peroxiredoxin prxU OS=Eu... [more]
PRDX1_CHICK5.671e-1128.33Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=... [more]
TSA1_SCHPO7.406e-1127.07Peroxiredoxin tpx1 OS=Schizosaccharomyces pombe GN... [more]
TDX2_BRUMA9.673e-1127.93Thioredoxin peroxidase 2 OS=Brugia malayi GN=tsa-2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A07-B14-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675403 ID=CX675403; Name=CX675403; organism=Citrus sinensis; type=EST; length=758bp
TTTTTTTTTATTGTATAATATATCAACGAACGTATATGACATGCATGGTC
AACTATTTATCTATTGCTTAGCTAAATGGAAACTGGTGAAGCTTTAGACA
TTGGTGAAACGCAAGTACTCTTTCTTGGATGGAAGATCCACAGTCTCAAA
ACCTTGAGGGAACGTCTCTTTGGCTTGATCACTAGACACACTTGGTGATA
TCACCACCGGATCTCCCTGCTTCCAGTTTGCAGGCGTTGCAACCTTATGC
TTCAGTGCCTTCTGCAGAGAGTCCAATGCCCTTACTACTTCATCCATGTT
CCGGCCAGTCGACGCCGGGTAAAGAAAGCTCAGTTTCACCTGATGATCAG
GGCCCACGATATGAAGGGCTCGAGAAGGGAGCTGCTTTCCTGATGAATCT
TTTTCATCCGGGTCCACCATGTTGAGTTGCTTGATGATCTCTCGATTGGG
ATCTGCGATGATCGGATATGAGACCTTGCAACCAGGTGTGTAGGCTTCAA
TGTCTTTGATCCACTCATTGTGTGACTTAACGTCATCACAGGACAAACCC
AGAAGCTTCACTTCTCTCTTATCAAACTCTGGAACATAAGCTGCCCTCTT
GCCAAGTTCAGTTGTGCACACAGGAGTGAAATCACCTGGGTGAGAGAAGA
TAATGGTCCAGTTATCACCGATGAAGTCATGAAGCTTAAAGTTTCCTTGA
GTGGTTTGGACTTGAAAGTTGGGAACACAATCTCCAATTGTGAGGCCAGG
CATTTTGA
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