CX675400

Overview
NameCX675400
Unique NameCX675400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5497 contig Csv1_Contig5497:1..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF2C_RAT (Kinesin-like protein KIF2C OS=Rattus norvegicus GN=Kif2c PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.089e-14
Identity = 53/152 (34.87%), Postives = 81/152 (53.29%), Query Frame = -3
Query:  346 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSER-LSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPC-LGRDSKTLMFVNISPDSPSVGESLCSLRFAARV 795
            V    ++  ++   +  R+ G+T  N  SSRSH  F + +       + ++ G  +L+DLAG+ER    S A      E   INKSL +L + I AL + + H P+R SKLT +L+   +G +S+T M   ISP   S   +L +LR+A RV
Sbjct:  385 VTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILL-----RAKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKESIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRV 531          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF2C_XENLA (Kinesin-like protein KIF2C OS=Xenopus laevis GN=kif2c PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.793e-13
Identity = 51/153 (33.33%), Postives = 83/153 (54.25%), Query Frame = -3
Query:  346 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQA--INKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPC-LGRDSKTLMFVNISPDSPSVGESLCSLRFAARV 795
            V S  ++  ++   +  R+ G+T  N  SSRSH    + +         ++ G  +L+DLAG+ER     A+ DR+   +   IN+SL +L + I AL + + H P+R SKLT +L+   +G +S+T M   +SP   S   +L +LR+A RV
Sbjct:  443 VISADDVFKMIEIGSACRTSGQTFANTSSSRSHACLQIIL-----RRGSKLHGKFSLVDLAGNER-GVDTASADRITRMEGAEINRSLLALKECIRALGQNKSHTPFRESKLTQILRDSFIGENSRTCMIAMLSPGFNSCEYTLNTLRYADRV 589          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: YOG1_SCHPO (Kinesin-like motor protein C15D4.01c OS=Schizosaccharomyces pombe GN=SPBC15D4.01c PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.341e-12
Identity = 58/166 (34.94%), Postives = 88/166 (53.01%), Query Frame = -3
Query:  322 VDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDH----IPYRNSKLTYLL--QPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIGVP 801
            V V + +E   L+++  Q R    T+ N  SSRSH + ++ +F V   + +     ++L+DLAGSER   +  +G  L+E  +IN+SL +L   + AL +K +     IP+R SKLT LL     L   +   M VNI P   S  E+   +R++A  NA EI  P
Sbjct:  233 VFVSNTTEAYKLIQKVLQLRKSTSTKSNSVSSRSHLIMSIELFKVCTKSNKFESCQIDLVDLAGSERTRSAETSGLLLREGASINRSLLTLGQCLEALRRKHEGKQHIIPFRQSKLTELLFHSGHLSGLAGINMLVNIDPFG-SFDENAQVMRYSA--NAREILPP 395          
The following BLAST results are available for this feature:
BLAST of CX675400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
KIF2C_RAT6.089e-1434.87Kinesin-like protein KIF2C OS=Rattus norvegicus GN... [more]
KIF2C_XENLA8.793e-1333.33Kinesin-like protein KIF2C OS=Xenopus laevis GN=ki... [more]
YOG1_SCHPO3.341e-1234.94Kinesin-like motor protein C15D4.01c OS=Schizosacc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A05-B10-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675400 ID=CX675400; Name=CX675400; organism=Citrus sinensis; type=EST; length=809bp
TTTTTTTTTAACAGAGTGAAAAGGACTCAATTTCACTATCAATAAAAGTA
CATATTACAGAAATTGCTTCCGCGGTTCTACCTTCAAATTGTATTCATCA
ACTGATGAACTTTGTCATACAACAAACAATAGTCACCTTTATAAGCCAAT
AAATTAACTATCATGCAATGAAAAGCAAAATTAAGATCCTATAATCTCAC
CATGACAACCCACTCCAGTGCATGTGGGACACAGTCATTATGAACATGAC
AAAGTAAACACGTCAGTATTTCAACCATAACTCAACCGAGAATCAGCAGC
CTTCAAAGTCAATTGGCGACTGGGAACCCCAATTTCGCAGGCATTGACTC
TCGCAGCAAACCGTAGAGAGCAAAGGGACTCACCAACGGACGGAGAATCA
GGCGAGATGTTAACAAACATTAAAGTTTTAGAATCTCTCCCAAGACACGG
CTGAAGAAGATATGTCAGCTTCGAGTTCCTATATGGAATATGATCCTCCT
TCTTTGCCAAGGCAAATATAACATCACTCAATGATGACAGGCTTTTATTT
ATGGCCTGAGTTTCTTTCAAACGGTCACCAGTCGCCCCACTTCTTGATAA
TCGCTCACTTCCAGCTAGATCAATGAGGTTTAAGACACCCTGTACTTGTT
GTTCAGTTGCTTCATTTACTCCAAATATTCGTAACGTGAAGACAAAATGG
CTTCTTGATGAATACTCATTCATTTGAGTCTTGCCCACAGACCTGCTCTG
TGCAGCCTGCCTTAAAAGCGATGAAATCTCTGATATGCTACAGACATCAA
CAATCGTAA
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