CX675400

Overview
NameCX675400
Unique NameCX675400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5497 contig Csv1_Contig5497:1..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF3B_MOUSE (Kinesin-like protein KIF3B OS=Mus musculus GN=Kif3b PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.721e-30
Identity = 78/151 (51.66%), Postives = 102/151 (67.55%), Query Frame = -3
Query:  349 SISEISSLLRQAAQSRSVGKTQMNEYSSRSH--FVFTLRIFGVNEATEQQVQ-GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 789
            S+ EI  ++    Q+RSVG T MNE+SSRSH  FV T+    V    E  ++ G LNL+DLAGSER +++GA G+RLKE   IN SLS+L +VI AL   K  HIPYR+SKLT LLQ  LG ++KT+M  N+ P S +V E+L +LR+A R
Sbjct:  186 SVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANR 336          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF3B_HUMAN (Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3B PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.721e-30
Identity = 78/151 (51.66%), Postives = 102/151 (67.55%), Query Frame = -3
Query:  349 SISEISSLLRQAAQSRSVGKTQMNEYSSRSH--FVFTLRIFGVNEATEQQVQ-GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 789
            S+ EI  ++    Q+RSVG T MNE+SSRSH  FV T+    V    E  ++ G LNL+DLAGSER +++GA G+RLKE   IN SLS+L +VI AL   K  HIPYR+SKLT LLQ  LG ++KT+M  N+ P S +V E+L +LR+A R
Sbjct:  186 SVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANR 336          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KRP95_STRPU (Kinesin-II 95 kDa subunit OS=Strongylocentrotus purpuratus GN=KRP95 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.553e-30
Identity = 77/152 (50.66%), Postives = 102/152 (67.11%), Query Frame = -3
Query:  349 SISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRI----FGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 789
            S+ EI  ++     +RSVG T MNE+SSRSH +F + I     GV+     +V G LNL+DLAGSER +++GATGDRLKE   IN SLS+L +VI AL   K  HIPYR+SKLT LLQ  LG ++KT+M  N+ P S +  E++ +LR+A R
Sbjct:  185 SVKEIEHVMTVGNNNRSVGSTNMNEHSSRSHAIFIITIECSELGVDGENHIRV-GKLNLVDLAGSERQAKTGATGDRLKEATKINLSLSALGNVISALVDGKSSHIPYRDSKLTRLLQDSLGGNAKTVMVANMGPASYNFDETITTLRYANR 335          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: OSM3_CAEEL (Osmotic avoidance abnormal protein 3 OS=Caenorhabditis elegans GN=osm-3 PE=2 SV=4)

HSP 1 Score: 130.568 bits (327), Expect = 1.034e-29
Identity = 76/151 (50.33%), Postives = 101/151 (66.89%), Query Frame = -3
Query:  349 VC-SISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 795
            VC  +     L+ +   +R VG T MN+ SSRSH +FT+ + G+ E    ++ G LNL+DLAGSER S++GATGDRLKE   IN SLS+L +VI AL   K  HIPYR+SKLT LLQ  LG ++KT+M   +SP S +  E+L +LR+A R
Sbjct:  174 VCHDVPACKELMTRGFNNRHVGATLMNKDSSRSHSIFTVYVEGMTETGSIRM-GKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSKHIPYRDSKLTRLLQDSLGGNTKTIMIACVSPSSDNYDETLSTLRYANR 323          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF3A_MOUSE (Kinesin-like protein KIF3A OS=Mus musculus GN=Kif3a PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.143e-28
Identity = 75/157 (47.77%), Postives = 102/157 (64.97%), Query Frame = -3
Query:  349 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQG-------VLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 795
            V +  ++  ++    ++RSVG T MNE+SSRSH +FT+ I    E +E+ V G        L+L+DLAGSER +++GATG RLKE   IN SLS+L +VI AL   K  H+PYRNSKLT LLQ  LG +SKT+M  NI P   +  E++ +LR+A R
Sbjct:  189 VNNADDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITI----ECSEKGVDGNMHVRMGKLHLVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDETISTLRYANR 341          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KINH_NEUCR (Kinesin heavy chain OS=Neurospora crassa GN=kin PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.493e-28
Identity = 68/153 (44.44%), Postives = 98/153 (64.05%), Query Frame = -3
Query:  340 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNA 795
            V S+ E+  ++R+   +R+V  T MN+ SSRSH +F + I   N  T     G L L+DLAGSE++ ++GA+G  L+E + INKSLS+L  VI AL   K  H+PYR+SKLT +LQ  LG +S+T + +N SP S +  E+L +LRF  R  +
Sbjct:  177 VSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKS 329          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF3A_PONAB (Kinesin-like protein KIF3A OS=Pongo abelii GN=KIF3A PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.493e-28
Identity = 74/157 (47.13%), Postives = 102/157 (64.97%), Query Frame = -3
Query:  349 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQG-------VLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 795
            V +  ++  ++    ++RSVG T MNE+SSRSH +FT+ I    E +E+ + G        L+L+DLAGSER +++GATG RLKE   IN SLS+L +VI AL   K  H+PYRNSKLT LLQ  LG +SKT+M  NI P   +  E++ +LR+A R
Sbjct:  189 VNNADDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITI----ECSEKGIDGNMHVRMGKLHLVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDETISTLRYANR 341          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF3A_MACFA (Kinesin-like protein KIF3A OS=Macaca fascicularis GN=KIF3A PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.493e-28
Identity = 74/157 (47.13%), Postives = 102/157 (64.97%), Query Frame = -3
Query:  349 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQG-------VLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 795
            V +  ++  ++    ++RSVG T MNE+SSRSH +FT+ I    E +E+ + G        L+L+DLAGSER +++GATG RLKE   IN SLS+L +VI AL   K  H+PYRNSKLT LLQ  LG +SKT+M  NI P   +  E++ +LR+A R
Sbjct:  189 VNNADDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITI----ECSEKGIDGNMHVRMGKLHLVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDETISTLRYANR 341          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF3A_HUMAN (Kinesin-like protein KIF3A OS=Homo sapiens GN=KIF3A PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.493e-28
Identity = 74/157 (47.13%), Postives = 102/157 (64.97%), Query Frame = -3
Query:  349 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQG-------VLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 795
            V +  ++  ++    ++RSVG T MNE+SSRSH +FT+ I    E +E+ + G        L+L+DLAGSER +++GATG RLKE   IN SLS+L +VI AL   K  H+PYRNSKLT LLQ  LG +SKT+M  NI P   +  E++ +LR+A R
Sbjct:  189 VNNADDMDRIMTLGHKNRSVGATNMNEHSSRSHAIFTITI----ECSEKGIDGNMHVRMGKLHLVDLAGSERQAKTGATGQRLKEATKINLSLSTLGNVISALVDGKSTHVPYRNSKLTRLLQDSLGGNSKTMMCANIGPADYNYDETISTLRYANR 341          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KINH_GIBMO (Kinesin heavy chain OS=Gibberella moniliformis GN=KLP1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.950e-28
Identity = 69/153 (45.10%), Postives = 98/153 (64.05%), Query Frame = -3
Query:  340 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNA 795
            V S+ E+  ++R+   +R+V  T MN+ SSRSH +F + I   N  T     G L L+DLAGSE++ ++GA+G  L+E + INKSLS+L  VI AL   K  HIPYR+SKLT +LQ  LG +S+T + +N SP S +  E+L +LRF  R  +
Sbjct:  176 VSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHIPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLGTLRFGMRAKS 328          
The following BLAST results are available for this feature:
BLAST of CX675400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
KIF3B_MOUSE2.721e-3051.66Kinesin-like protein KIF3B OS=Mus musculus GN=Kif3... [more]
KIF3B_HUMAN2.721e-3051.66Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3... [more]
KRP95_STRPU3.553e-3050.66Kinesin-II 95 kDa subunit OS=Strongylocentrotus pu... [more]
OSM3_CAEEL1.034e-2950.33Osmotic avoidance abnormal protein 3 OS=Caenorhabd... [more]
KIF3A_MOUSE1.143e-2847.77Kinesin-like protein KIF3A OS=Mus musculus GN=Kif3... [more]
KINH_NEUCR1.493e-2844.44Kinesin heavy chain OS=Neurospora crassa GN=kin PE... [more]
KIF3A_PONAB1.493e-2847.13Kinesin-like protein KIF3A OS=Pongo abelii GN=KIF3... [more]
KIF3A_MACFA1.493e-2847.13Kinesin-like protein KIF3A OS=Macaca fascicularis ... [more]
KIF3A_HUMAN1.493e-2847.13Kinesin-like protein KIF3A OS=Homo sapiens GN=KIF3... [more]
KINH_GIBMO1.950e-2845.10Kinesin heavy chain OS=Gibberella moniliformis GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A05-B10-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675400 ID=CX675400; Name=CX675400; organism=Citrus sinensis; type=EST; length=809bp
TTTTTTTTTAACAGAGTGAAAAGGACTCAATTTCACTATCAATAAAAGTA
CATATTACAGAAATTGCTTCCGCGGTTCTACCTTCAAATTGTATTCATCA
ACTGATGAACTTTGTCATACAACAAACAATAGTCACCTTTATAAGCCAAT
AAATTAACTATCATGCAATGAAAAGCAAAATTAAGATCCTATAATCTCAC
CATGACAACCCACTCCAGTGCATGTGGGACACAGTCATTATGAACATGAC
AAAGTAAACACGTCAGTATTTCAACCATAACTCAACCGAGAATCAGCAGC
CTTCAAAGTCAATTGGCGACTGGGAACCCCAATTTCGCAGGCATTGACTC
TCGCAGCAAACCGTAGAGAGCAAAGGGACTCACCAACGGACGGAGAATCA
GGCGAGATGTTAACAAACATTAAAGTTTTAGAATCTCTCCCAAGACACGG
CTGAAGAAGATATGTCAGCTTCGAGTTCCTATATGGAATATGATCCTCCT
TCTTTGCCAAGGCAAATATAACATCACTCAATGATGACAGGCTTTTATTT
ATGGCCTGAGTTTCTTTCAAACGGTCACCAGTCGCCCCACTTCTTGATAA
TCGCTCACTTCCAGCTAGATCAATGAGGTTTAAGACACCCTGTACTTGTT
GTTCAGTTGCTTCATTTACTCCAAATATTCGTAACGTGAAGACAAAATGG
CTTCTTGATGAATACTCATTCATTTGAGTCTTGCCCACAGACCTGCTCTG
TGCAGCCTGCCTTAAAAGCGATGAAATCTCTGATATGCTACAGACATCAA
CAATCGTAA
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