CX675400

Overview
NameCX675400
Unique NameCX675400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5497 contig Csv1_Contig5497:1..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KINH_LOLPE (Kinesin heavy chain OS=Loligo pealeii PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.935e-26
Identity = 66/150 (44.00%), Postives = 97/150 (64.67%), Query Frame = -3
Query:  349 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 795
            V S  E+  ++ +   +R V  T MNE+SSRSH VF + +   N  T++++ G L L+DLAGSE++S++GA G  L E + INKSLS+L +VI ALA   + H+PYR+SKLT +LQ  LG +++T M +  SP S +  E+  +L F  R
Sbjct:  173 VSSPEEVMEVIDEGKNNRHVAVTNMNEHSSRSHSVFLINVKQENVETQKKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALADGNKSHVPYRDSKLTRILQESLGGNARTTMVICCSPASYNESETKSTLLFGQR 322          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF3_DICDI (Kinesin-related protein 3 OS=Dictyostelium discoideum GN=kif3 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.935e-26
Identity = 66/145 (45.52%), Postives = 93/145 (64.14%), Query Frame = -3
Query:  349 EISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 780
            +I  ++     +R++ +T+MN  SSRSH +F L I   N        G L L+DLAGSE++S++GA G  L E + INKSLSSL +VI AL   K  HIPYR+SKLT +LQ  LG +S+T + +N SP S +  E++ +LRF +R
Sbjct:  181 DILDVINTGISNRAIAETRMNAESSRSHSIFILTIQQKNLKVGSIKTGKLYLVDLAGSEKISKTGAQGTTLDEAKMINKSLSSLGNVINALTDGKSTHIPYRDSKLTRVLQESLGGNSRTTLIINCSPSSYNEAETISTLRFGSR 325          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF5_DICDI (Kinesin-related protein 5 OS=Dictyostelium discoideum GN=kif5 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.057e-26
Identity = 69/162 (42.59%), Postives = 101/162 (62.35%), Query Frame = -3
Query:  313 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA-KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIGVPSRQ 795
            V S  +I  L++    SRSV KT MN+ SSRSH +  + I     +   + +G LNL+DLAGSE++S++GA G  L++ + IN+SLS L + I AL   K +HIP+R+SKLT LLQ  LG ++KT + V  SP   +V E++ +L+F AR  + +  V   Q
Sbjct:  178 VASEEDIMELIQVGESSRSVAKTNMNQRSSRSHSILIIAI-EQKSSDGSKKRGKLNLVDLAGSEKVSKTGAEGIVLEQAKKINQSLSLLGNCIHALTDSKREHIPFRDSKLTRLLQDSLGGNTKTTLLVTASPHFNNVDETISTLKFGARAKSIKNNVKVNQ 338          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF1_DICDI (Kinesin-related protein 1 OS=Dictyostelium discoideum GN=kif1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.057e-26
Identity = 74/157 (47.13%), Postives = 101/157 (64.33%), Query Frame = -3
Query:  355 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGV-----LNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA-----KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFA 795
            V S SEI  L+ + +++R+V  T MN  SSRSH VFT+ +F  ++  + +   +     ++L+DLAGSER + +GATG RLKE   INKSLS+L  VI ALA     KK   +PYR+S LTYLL+  LG +SKT+M   ISP   +  ESL +LR+A
Sbjct:  194 VKSFSEIDMLMDEGSKARTVASTNMNATSSRSHAVFTI-VFTQSKIDKTRGTAIDRVSKISLVDLAGSERANSTGATGVRLKEGANINKSLSTLGKVISALAENSTSKKAVFVPYRDSVLTYLLKETLGGNSKTIMIAAISPADINYEESLSTLRYA 349          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KI13B_HUMAN (Kinesin-like protein KIF13B OS=Homo sapiens GN=KIF13B PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.057e-26
Identity = 70/157 (44.59%), Postives = 97/157 (61.78%), Query Frame = -3
Query:  349 SISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVF----TLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA------KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 789
            S  +I SL+ +  +SR+V  T MNE SSRSH V     T  ++     T  +  G L+L+DLAGSER +++GA GDRLKE   IN+SL++L  VI ALA       K   +PYR+S LT+LL+  LG +SKT M   +SP + +  E+L +LR+A R
Sbjct:  193 SYKDIESLMSEGNKSRTVAATNMNEESSRSHAVLKITLTHTLYDAKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINESLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADR 349          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: CIN8_CANGA (Kinesin-like protein CIN8 OS=Candida glabrata GN=CIN8 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.018e-25
Identity = 64/149 (42.95%), Postives = 94/149 (63.09%), Query Frame = -3
Query:  349 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 795
            + S  E   LL++  + R V  T+MN++SSRSH +FT+ ++        +V   +NL+DLAGSE +SRSGA   R KE  +IN+SL +L  VI +LA K +HIP+R SKLT LLQ  LG ++KT +   ISP   +  E+  +L +A++
Sbjct:  319 ITSAMEGLQLLQKGLKQRQVASTKMNDFSSRSHSIFTITLYKEQNGELFRVSK-MNLVDLAGSENISRSGAMNQRAKEAGSINQSLLTLGRVINSLADKSEHIPFRESKLTRLLQDSLGGNTKTALIATISPAKMTSEETCSTLEYASK 466          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF5C_MOUSE (Kinesin heavy chain isoform 5C OS=Mus musculus GN=Kif5c PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 4.495e-25
Identity = 70/174 (40.23%), Postives = 105/174 (60.34%), Query Frame = -3
Query:  277 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIGVPSRQLTLKAADSRLSY 795
            V S  E+  ++ +   +R V  T MNE+SSRSH +F + I   N  TE+++ G L L+DLAGSE++S++GA G  L E + INKSLS+L +VI ALA+  + H+PYR+SK+T +LQ  LG + +T + +  SP   +  E+  +L F  R    +  V S  L L A + +  Y
Sbjct:  174 VSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV-SVNLELTAEEWKKKY 346          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF5C_HUMAN (Kinesin heavy chain isoform 5C OS=Homo sapiens GN=KIF5C PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.495e-25
Identity = 70/174 (40.23%), Postives = 105/174 (60.34%), Query Frame = -3
Query:  277 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIGVPSRQLTLKAADSRLSY 795
            V S  E+  ++ +   +R V  T MNE+SSRSH +F + I   N  TE+++ G L L+DLAGSE++S++GA G  L E + INKSLS+L +VI ALA+  + H+PYR+SK+T +LQ  LG + +T + +  SP   +  E+  +L F  R    +  V S  L L A + +  Y
Sbjct:  174 VSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV-SVNLELTAEEWKKKY 346          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF15_STRPU (Kinesin-like protein KIF15 OS=Strongylocentrotus purpuratus GN=KIF15 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.495e-25
Identity = 72/159 (45.28%), Postives = 96/159 (60.38%), Query Frame = -3
Query:  349 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRI------FGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK----KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 795
            V S SE   +L+    +R V  T MN  SSRSH VFT+ I       GV+     Q    L+L+DLAGSER   + A G RLKE  +INKSLS L +VI AL      K+ H+PYR+SKL++LL+  LG ++KT +  N+ PD+   GE+L +L+FA R
Sbjct:  196 VASASEAYGVLQAGWHNRRVAATSMNRESSRSHAVFTVSIESKEKKAGVSNIRVSQ----LHLVDLAGSERQKDTKAIGVRLKEAGSINKSLSILGNVIMALVDIAHGKQRHVPYRDSKLSFLLRDSLGGNAKTYIIANVHPDAKCFGETLSTLKFARR 350          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KINH_CAEEL (Kinesin heavy chain OS=Caenorhabditis elegans GN=unc-116 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.871e-25
Identity = 63/145 (43.45%), Postives = 95/145 (65.52%), Query Frame = -3
Query:  349 EISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 780
            E+   +     +R V  T MNE+SSRSH VF + +   ++ T++Q+ G L L+DLAGSE++S++GA G  L+E + INKSL++L  VI ALA+  + H+PYR+SKLT +LQ  LG +S+T + +  SP   +  E+  +L F AR
Sbjct:  181 EVLQAIEDGKSNRMVAVTNMNEHSSRSHSVFLITVKQEHQTTKKQLTGKLYLVDLAGSEKVSKTGAQGTVLEEAKNINKSLTALGIVISALAEGTKSHVPYRDSKLTRILQESLGGNSRTTVIICASPSHFNEAETKSTLLFGAR 325          
The following BLAST results are available for this feature:
BLAST of CX675400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
KINH_LOLPE6.935e-2644.00Kinesin heavy chain OS=Loligo pealeii PE=2 SV=1[more]
KIF3_DICDI6.935e-2645.52Kinesin-related protein 3 OS=Dictyostelium discoid... [more]
KIF5_DICDI9.057e-2642.59Kinesin-related protein 5 OS=Dictyostelium discoid... [more]
KIF1_DICDI9.057e-2647.13Kinesin-related protein 1 OS=Dictyostelium discoid... [more]
KI13B_HUMAN9.057e-2644.59Kinesin-like protein KIF13B OS=Homo sapiens GN=KIF... [more]
CIN8_CANGA2.018e-2542.95Kinesin-like protein CIN8 OS=Candida glabrata GN=C... [more]
KIF5C_MOUSE4.495e-2540.23Kinesin heavy chain isoform 5C OS=Mus musculus GN=... [more]
KIF5C_HUMAN4.495e-2540.23Kinesin heavy chain isoform 5C OS=Homo sapiens GN=... [more]
KIF15_STRPU4.495e-2545.28Kinesin-like protein KIF15 OS=Strongylocentrotus p... [more]
KINH_CAEEL5.871e-2543.45Kinesin heavy chain OS=Caenorhabditis elegans GN=u... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_62A05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A05-B10-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675400 ID=CX675400; Name=CX675400; organism=Citrus sinensis; type=EST; length=809bp
TTTTTTTTTAACAGAGTGAAAAGGACTCAATTTCACTATCAATAAAAGTA
CATATTACAGAAATTGCTTCCGCGGTTCTACCTTCAAATTGTATTCATCA
ACTGATGAACTTTGTCATACAACAAACAATAGTCACCTTTATAAGCCAAT
AAATTAACTATCATGCAATGAAAAGCAAAATTAAGATCCTATAATCTCAC
CATGACAACCCACTCCAGTGCATGTGGGACACAGTCATTATGAACATGAC
AAAGTAAACACGTCAGTATTTCAACCATAACTCAACCGAGAATCAGCAGC
CTTCAAAGTCAATTGGCGACTGGGAACCCCAATTTCGCAGGCATTGACTC
TCGCAGCAAACCGTAGAGAGCAAAGGGACTCACCAACGGACGGAGAATCA
GGCGAGATGTTAACAAACATTAAAGTTTTAGAATCTCTCCCAAGACACGG
CTGAAGAAGATATGTCAGCTTCGAGTTCCTATATGGAATATGATCCTCCT
TCTTTGCCAAGGCAAATATAACATCACTCAATGATGACAGGCTTTTATTT
ATGGCCTGAGTTTCTTTCAAACGGTCACCAGTCGCCCCACTTCTTGATAA
TCGCTCACTTCCAGCTAGATCAATGAGGTTTAAGACACCCTGTACTTGTT
GTTCAGTTGCTTCATTTACTCCAAATATTCGTAACGTGAAGACAAAATGG
CTTCTTGATGAATACTCATTCATTTGAGTCTTGCCCACAGACCTGCTCTG
TGCAGCCTGCCTTAAAAGCGATGAAATCTCTGATATGCTACAGACATCAA
CAATCGTAA
back to top