CX675400

Overview
NameCX675400
Unique NameCX675400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5497 contig Csv1_Contig5497:1..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KI13A_MOUSE (Kinesin-like protein KIF13A OS=Mus musculus GN=Kif13a PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.871e-25
Identity = 69/159 (43.40%), Postives = 99/159 (62.26%), Query Frame = -3
Query:  349 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVF----TLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK------KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 795
            V S  +I SL+ +  +SR+V  T MNE SSRSH VF    T  ++ +      +    ++L+DLAGSER+S++GA G+RLKE   INKSL++L  VI +LA       K   +PYR+S LT+LL+  LG +S+T M   ISP + +  E+L +LR+A R
Sbjct:  190 VTSFEDIESLMSEGNKSRTVAATNMNEESSRSHAVFNIIITQTLYDLQSGNSGEKVSKVSLVDLAGSERVSKTGAAGERLKEGSNINKSLTTLGLVISSLADQAAGKGKNKFVPYRDSVLTWLLKDNLGGNSQTSMIATISPAADNYEETLSTLRYADR 348          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KI13A_HUMAN (Kinesin-like protein KIF13A OS=Homo sapiens GN=KIF13A PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.871e-25
Identity = 69/159 (43.40%), Postives = 99/159 (62.26%), Query Frame = -3
Query:  349 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVF----TLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK------KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 795
            V S  +I SL+ +  +SR+V  T MNE SSRSH VF    T  ++ +      +    ++L+DLAGSER+S++GA G+RLKE   INKSL++L  VI +LA       K   +PYR+S LT+LL+  LG +S+T M   ISP + +  E+L +LR+A R
Sbjct:  190 VTSFEDIESLMSEGNKSRTVAATNMNEESSRSHAVFNIIITQTLYDLQSGNSGEKVSKVSLVDLAGSERVSKTGAAGERLKEGSNINKSLTTLGLVISSLADQAAGKGKSKFVPYRDSVLTWLLKDNLGGNSQTSMIATISPAADNYEETLSTLRYADR 348          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF3C_RAT (Kinesin-like protein KIF3C OS=Rattus norvegicus GN=Kif3c PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.001e-24
Identity = 73/177 (41.24%), Postives = 99/177 (55.93%), Query Frame = -3
Query:  349 SISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQ---GVLNLIDLAGSERLSR--------------------------SGATGDRLKETQAINKSLSSLSDVIFALA-KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 789
            ++ EI  ++    Q+R+VG T MNE SSRSH +F + +      ++ Q     G LNL+DLAGSER ++                          SG++G+R KE   IN SLS+L +VI ALA  +  HIPYR+SKLT LLQ  LG ++KT+M   + P S S  ESL +LRFA R
Sbjct:  187 NVKEIEHVMNLGNQARAVGSTHMNEVSSRSHAIFVITVECSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTPGGPATQSTAGGGGGGGGTSGSGSSGERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANR 363          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: EG52_XENLA (Kinesin-related motor protein Eg5 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.001e-24
Identity = 73/173 (42.20%), Postives = 104/173 (60.12%), Query Frame = -3
Query:  298 VDVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEAT---EQQVQ-GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARV-NACEIGVPSRQLTLKA 801
            + V +  E+  +L + A  R    T MN YSSRSH VF++ I  + E T   E+ V+ G LNL+DLAGSE + RSGA   R +E   IN+SL +L  VI AL ++  HIPYR SKLT +LQ  LG  +KT +   +SP S ++ E++ +L +A+R  N       +++LT KA
Sbjct:  202 ISVHNKDEVYQILERGAAKRKTASTLMNAYSSRSHSVFSVTIH-MKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERAPHIPYRESKLTRILQDSLGGRTKTSIIATVSPASINLEETMSTLDYASRAKNIMNKPEVNQKLTKKA 373          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: BIMC_EMENI (Kinesin-like protein bimC OS=Emericella nidulans GN=bimC PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.308e-24
Identity = 69/143 (48.25%), Postives = 87/143 (60.84%), Query Frame = -3
Query:  349 LLRQAAQSRSVGKTQMNEYSSRSHFVFTL--RIFGVNEATEQQV-QGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 768
            LL+Q +  R V  T+ N+ SSRSH VFT+   I    E+ E+ V  G LNL+DLAGSE + RSGA   R  E   INKSL +L  VI AL  K  HIPYR SKLT LLQ  LG  +KT +   ISP   ++ E++ +L +A R
Sbjct:  270 LLQQGSHKRQVAATKCNDLSSRSHTVFTITVNIKRTTESGEEYVCPGKLNLVDLAGSENIGRSGAENKRATEAGLINKSLLTLGRVINALVDKSQHIPYRESKLTRLLQDSLGGRTKTCIIATISPARSNLEETISTLDYAFR 412          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF7_DANRE (Kinesin-like protein kif7 OS=Danio rerio GN=kif7 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.708e-24
Identity = 70/159 (44.03%), Postives = 96/159 (60.38%), Query Frame = -3
Query:  349 DVCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIF---GVNEATEQQVQ---GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA---KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 798
            +V  + E+ SLL     +R  G TQMN +SSRSH +FT+ +    G + A    VQ      + +DLAGSER+ ++G TG+RLKE+  IN  L  L +VI AL    +K  HIPYR+SK+T +L+  LG ++KTLM   ISP S    ESL +L +A R
Sbjct:  185 EVEGLDEVLSLLESGKTARHTGATQMNPHSSRSHTIFTVLMEQRRGGSRAANGSVQILSSKFHFVDLAGSERILKTGNTGERLKESIQINSGLLVLGNVIGALGDPKRKGTHIPYRDSKITRILKDSLGGNAKTLMIACISPSSSDFDESLNTLNYAKR 343          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF3C_PONAB (Kinesin-like protein KIF3C OS=Pongo abelii GN=KIF3C PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.708e-24
Identity = 73/175 (41.71%), Postives = 98/175 (56.00%), Query Frame = -3
Query:  349 SISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQ---GVLNLIDLAGSERLSRSG------------------------ATGDRLKETQAINKSLSSLSDVIFALA-KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 789
            ++ EI  ++    Q+R+VG T MNE SSRSH +F + +      ++ Q     G LNL+DLAGSER +++G                        A G+R KE   IN SLS+L +VI ALA  +  HIPYR+SKLT LLQ  LG ++KT+M   + P S S  ESL +LRFA R
Sbjct:  187 NVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGASTPSSGGSGGGGGSGGGAGGERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANR 361          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF3C_HUMAN (Kinesin-like protein KIF3C OS=Homo sapiens GN=KIF3C PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.708e-24
Identity = 73/175 (41.71%), Postives = 98/175 (56.00%), Query Frame = -3
Query:  349 SISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQ---GVLNLIDLAGSERLSRSG------------------------ATGDRLKETQAINKSLSSLSDVIFALA-KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 789
            ++ EI  ++    Q+R+VG T MNE SSRSH +F + +      ++ Q     G LNL+DLAGSER +++G                        A G+R KE   IN SLS+L +VI ALA  +  HIPYR+SKLT LLQ  LG ++KT+M   + P S S  ESL +LRFA R
Sbjct:  187 NVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANR 361          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF1A_AEDAE (Kinesin-like protein unc-104 OS=Aedes aegypti GN=unc-104 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.708e-24
Identity = 74/162 (45.68%), Postives = 99/162 (61.11%), Query Frame = -3
Query:  349 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFG--VNEATEQQVQGV--LNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA---------KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 795
            V S  +I  L+ +  ++R+V  T MNE SSRSH VFT+      V++ T  + + V  ++L+DLAGSER   +GA G RLKE   INKSL++L  VI ALA         KK D IPYR+S LT+LL+  LG +SKT M   ISP   +  E+L +LR+A R
Sbjct:  186 VTSYQDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQRRVDKMTSLETEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEVASKSKKSKKADFIPYRDSVLTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADR 347          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KINH_DROME (Kinesin heavy chain OS=Drosophila melanogaster GN=Khc PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.231e-24
Identity = 63/150 (42.00%), Postives = 96/150 (64.00%), Query Frame = -3
Query:  349 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK-KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 795
            V S  ++  ++ +   +R +  T MNE+SSRSH VF + +   N   ++++ G L L+DLAGSE++S++GA G  L E + INKSLS+L +VI ALA   + HIPYR+SKLT +LQ  LG +++T + +  SP S +  E+  +L F  R
Sbjct:  180 VSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRR 329          
The following BLAST results are available for this feature:
BLAST of CX675400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
KI13A_MOUSE5.871e-2543.40Kinesin-like protein KIF13A OS=Mus musculus GN=Kif... [more]
KI13A_HUMAN5.871e-2543.40Kinesin-like protein KIF13A OS=Homo sapiens GN=KIF... [more]
KIF3C_RAT1.001e-2441.24Kinesin-like protein KIF3C OS=Rattus norvegicus GN... [more]
EG52_XENLA1.001e-2442.20Kinesin-related motor protein Eg5 2 OS=Xenopus lae... [more]
BIMC_EMENI1.308e-2448.25Kinesin-like protein bimC OS=Emericella nidulans G... [more]
KIF7_DANRE1.708e-2444.03Kinesin-like protein kif7 OS=Danio rerio GN=kif7 P... [more]
KIF3C_PONAB1.708e-2441.71Kinesin-like protein KIF3C OS=Pongo abelii GN=KIF3... [more]
KIF3C_HUMAN1.708e-2441.71Kinesin-like protein KIF3C OS=Homo sapiens GN=KIF3... [more]
KIF1A_AEDAE1.708e-2445.68Kinesin-like protein unc-104 OS=Aedes aegypti GN=u... [more]
KINH_DROME2.231e-2442.00Kinesin heavy chain OS=Drosophila melanogaster GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_62A05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A05-B10-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675400 ID=CX675400; Name=CX675400; organism=Citrus sinensis; type=EST; length=809bp
TTTTTTTTTAACAGAGTGAAAAGGACTCAATTTCACTATCAATAAAAGTA
CATATTACAGAAATTGCTTCCGCGGTTCTACCTTCAAATTGTATTCATCA
ACTGATGAACTTTGTCATACAACAAACAATAGTCACCTTTATAAGCCAAT
AAATTAACTATCATGCAATGAAAAGCAAAATTAAGATCCTATAATCTCAC
CATGACAACCCACTCCAGTGCATGTGGGACACAGTCATTATGAACATGAC
AAAGTAAACACGTCAGTATTTCAACCATAACTCAACCGAGAATCAGCAGC
CTTCAAAGTCAATTGGCGACTGGGAACCCCAATTTCGCAGGCATTGACTC
TCGCAGCAAACCGTAGAGAGCAAAGGGACTCACCAACGGACGGAGAATCA
GGCGAGATGTTAACAAACATTAAAGTTTTAGAATCTCTCCCAAGACACGG
CTGAAGAAGATATGTCAGCTTCGAGTTCCTATATGGAATATGATCCTCCT
TCTTTGCCAAGGCAAATATAACATCACTCAATGATGACAGGCTTTTATTT
ATGGCCTGAGTTTCTTTCAAACGGTCACCAGTCGCCCCACTTCTTGATAA
TCGCTCACTTCCAGCTAGATCAATGAGGTTTAAGACACCCTGTACTTGTT
GTTCAGTTGCTTCATTTACTCCAAATATTCGTAACGTGAAGACAAAATGG
CTTCTTGATGAATACTCATTCATTTGAGTCTTGCCCACAGACCTGCTCTG
TGCAGCCTGCCTTAAAAGCGATGAAATCTCTGATATGCTACAGACATCAA
CAATCGTAA
back to top