CX675400

Overview
NameCX675400
Unique NameCX675400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5497 contig Csv1_Contig5497:1..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF1A_DROME (Kinesin-like protein unc-104 OS=Drosophila melanogaster GN=unc-104 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.107e-23
Identity = 73/163 (44.79%), Postives = 97/163 (59.51%), Query Frame = -3
Query:  349 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTL-----RIFGVNEATEQQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA---------KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 795
            V    +I  L+ +  ++R+V  T MNE SSRSH VFT+     R   +   T ++V  + +L+DLAGSER   +GA G RLKE   INKSL++L  VI ALA         KK D IPYR+S LT+LL+  LG +SKT M   ISP   +  E+L +LR+A R
Sbjct:  186 VTDYQDIHDLIDEGNKARTVAATNMNETSSRSHAVFTIFFTQRRHDLMTNLTTEKVSKI-SLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEVASKKKNTKKADFIPYRDSALTWLLRENLGGNSKTAMIAAISPADINYDETLSTLRYADR 347          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF15_HUMAN (Kinesin-like protein KIF15 OS=Homo sapiens GN=KIF15 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.107e-23
Identity = 69/155 (44.52%), Postives = 92/155 (59.35%), Query Frame = -3
Query:  349 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATE--QQVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAK----KEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 795
            V S +E   +L    ++R V  T MN  SSRSH VFT+ I  + ++ E       +LNL+DLAGSER   + A G RLKE   IN+SLS L  VI AL      K+ H+ YR+SKLT+LL+  LG ++KT +  N+ P S   GE+L +L FA R
Sbjct:  205 VTSAAEAYQVLSGGWRNRRVASTSMNRESSRSHAVFTITIESMEKSNEIVNIRTSLLNLVDLAGSERQKDTHAEGMRLKEAGNINRSLSCLGQVITALVDVGNGKQRHVCYRDSKLTFLLRDSLGGNAKTAIIANVHPGSRCFGETLSTLNFAQR 359          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KI16B_HUMAN (Kinesin-like protein KIF16B OS=Homo sapiens GN=KIF16B PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.107e-23
Identity = 68/163 (41.72%), Postives = 97/163 (59.51%), Query Frame = -3
Query:  349 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGV--LNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA------------KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 795
            V +  ++  L+     +R+   T MN+ SSRSH +FT++       +E   + V  ++L+DLAGSER   +GATG RLKE   INKSL +L +VI ALA            KK+  +PYR+S LT+LL+  LG +SKT+M   ISP   + GE+L +LR+A R
Sbjct:  192 VQNYGDVEELMDAGNINRTTAATGMNDVSSRSHAIFTIKFTQAKFDSEMPCETVSKIHLVDLAGSERADATGATGVRLKEGGNINKSLVTLGNVISALADLSQDAANTLAKKKQVFVPYRDSVLTWLLKDSLGGNSKTIMIATISPADVNYGETLSTLRYANR 354          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIP1_ASHGO (Kinesin-like protein KIP1 OS=Ashbya gossypii GN=KIP1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.889e-23
Identity = 71/167 (42.51%), Postives = 95/167 (56.89%), Query Frame = -3
Query:  301 SISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTL--RIFGVNEAT-EQQVQ-GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIGVPSRQLTLK 789
            S  E   LL   +  R V  T+ N+ SSRSH +FT+   +  ++  + EQ V+ G LNL+DLAGSE ++RSGA   R +E   INKSL +L  VI AL     HIPYR SKLT LLQ  LG  +KT +   ISP   S+ E++ +L +A R  + +      QL  K
Sbjct:  263 SAQEGLKLLMDGSLKRKVAATKCNDLSSRSHTIFTITTNVTKIHPISGEQYVKVGKLNLVDLAGSENINRSGAENKRAQEAGLINKSLLTLGRVINALVDHSQHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKISMEETVSTLEYATRAKSIKNTPQVNQLMAK 429          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF1C_HUMAN (Kinesin-like protein KIF1C OS=Homo sapiens GN=KIF1C PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.889e-23
Identity = 72/162 (44.44%), Postives = 100/162 (61.73%), Query Frame = -3
Query:  349 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGV-------LNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA------KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 795
            V S ++I+ L+    ++R+V  T MNE SSRSH VFT+ +F   +    Q+ G+       ++L+DLAGSER   SGA G RLKE   INKSL++L  VI ALA      +K D IPYR+S LT+LL+  LG +S+T M   +SP   +  E+L +LR+A R
Sbjct:  186 VTSYADIADLMDCGNKARTVAATNMNETSSRSHAVFTI-VF--TQRCHDQLTGLDSEKVSKISLVDLAGSERADSSGARGMRLKEGANINKSLTTLGKVISALADMQSKKRKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYADR 344          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KI21B_HUMAN (Kinesin-like protein KIF21B OS=Homo sapiens GN=KIF21B PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.889e-23
Identity = 72/171 (42.11%), Postives = 96/171 (56.14%), Query Frame = -3
Query:  349 SISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFG---------VNEATEQQVQGV------------LNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFAL---AKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 789
            S  E+   L+Q A SR+   TQMN  SSRSH +FT+ +           VNEA      G              + +DLAGSERL R+GATG+R KE  +IN  L +L +VI AL   +KK  H+PYR+SKLT LLQ  LG +S+T+M   +SP      E+L +L++A R
Sbjct:  196 SQEELIQCLKQGALSRTTASTQMNVQSSRSHAIFTIHLCQMRMCTQPDLVNEAVTGLPDGTPPSSEYETLTAKFHFVDLAGSERLKRTGATGERAKEGISINCGLLALGNVISALGDQSKKVVHVPYRDSKLTRLLQDSLGGNSQTIMIACVSPSDRDFMETLNTLKYANR 366          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: CUT7_SCHPO (Kinesin-like protein cut7 OS=Schizosaccharomyces pombe GN=cut7 PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.889e-23
Identity = 66/171 (38.60%), Postives = 95/171 (55.56%), Query Frame = -3
Query:  301 LLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIF-----GVNEATEQQV----------QGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALAKKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAARVNACEIGVPSRQLTLK 768
            LLR+ +  R V  T+ N+ SSRSH +FT+ +      G+ + T                 L+++DLAGSE + RSGA   R +ET  IN+SL +L  VI AL +K  HIPYR SKLT LLQ  LG  +KT M V +S  + ++ E++ +L +AAR  +      + QL  +
Sbjct:  263 LLREGSHRRQVAATKCNDLSSRSHSIFTITLHRKVSSGMTDETNSLTINNNSDDLLRASKLHMVDLAGSENIGRSGAENKRARETGMINQSLLTLGRVINALVEKAHHIPYRESKLTRLLQDSLGGKTKTSMIVTVSSTNTNLEETISTLEYAARAKSIRNKPQNNQLVFR 433          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF4B_HUMAN (Chromosome-associated kinesin KIF4B OS=Homo sapiens GN=KIF4B PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.221e-23
Identity = 67/144 (46.53%), Postives = 89/144 (61.81%), Query Frame = -3
Query:  349 SLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQ-QVQGVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA--KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 771
            S L Q   SR+V  T MN  SSRSH +FT+ I    ++ +    +  L+L+DLAGSER  ++ A GDRLKE   IN+ L  L +VI AL   KK   +PYR+SKLT LLQ  LG +S TLM   +SP   ++ E+L +LR+A R
Sbjct:  189 SCLEQGNNSRTVASTAMNSQSSRSHAIFTISIEQRKKSDKNCSFRSKLHLVDLAGSERQKKTKAEGDRLKEGININRGLLCLGNVISALGDDKKGSFVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNLEETLSTLRYADR 332          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF1C_RAT (Kinesin-like protein KIF1C OS=Rattus norvegicus GN=Kif1c PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.207e-23
Identity = 71/162 (43.83%), Postives = 101/162 (62.35%), Query Frame = -3
Query:  349 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQGV-------LNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA------KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 795
            V S ++I+ L+    ++R+V  T MNE SSRSH VFT+ +F   + +  Q+ G+       ++L++LAGSER   SGA G RLKE   INKSL++L  VI ALA      +K D IPYR+S LT+LL+  LG +S+T M   +SP   +  E+L +LR+A R
Sbjct:  185 VTSYADIADLMDCGNKARTVAATNMNETSSRSHAVFTI-VF--TQRSHDQLTGLDSEKVSKISLVNLAGSERADSSGARGMRLKEGANINKSLTTLGKVISALADLQSKKRKSDFIPYRDSVLTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYADR 343          
BLAST of CX675400 vs. ExPASy Swiss-Prot
Match: KIF1B_RAT (Kinesin-like protein KIF1B OS=Rattus norvegicus GN=Kif1b PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.207e-23
Identity = 70/165 (42.42%), Postives = 96/165 (58.18%), Query Frame = -3
Query:  349 VCSISEISSLLRQAAQSRSVGKTQMNEYSSRSHFVFTLRIFGVNEATEQQVQ----GVLNLIDLAGSERLSRSGATGDRLKETQAINKSLSSLSDVIFALA------------KKEDHIPYRNSKLTYLLQPCLGRDSKTLMFVNISPDSPSVGESLCSLRFAAR 795
            V S ++I+ L+    ++R+V  T MNE SSRSH VFT+      +  E  +       ++L+DLAGSER   +GA G RLKE   INKSL++L  VI ALA            KK D IPYR+S LT+LL+  LG +S+T M   +SP   +  E+L +LR+A R
Sbjct:  186 VTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKQDPETNLSTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEVDNCTSKSKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADR 350          
The following BLAST results are available for this feature:
BLAST of CX675400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
KIF1A_DROME1.107e-2344.79Kinesin-like protein unc-104 OS=Drosophila melanog... [more]
KIF15_HUMAN1.107e-2344.52Kinesin-like protein KIF15 OS=Homo sapiens GN=KIF1... [more]
KI16B_HUMAN1.107e-2341.72Kinesin-like protein KIF16B OS=Homo sapiens GN=KIF... [more]
KIP1_ASHGO1.889e-2342.51Kinesin-like protein KIP1 OS=Ashbya gossypii GN=KI... [more]
KIF1C_HUMAN1.889e-2344.44Kinesin-like protein KIF1C OS=Homo sapiens GN=KIF1... [more]
KI21B_HUMAN1.889e-2342.11Kinesin-like protein KIF21B OS=Homo sapiens GN=KIF... [more]
CUT7_SCHPO1.889e-2338.60Kinesin-like protein cut7 OS=Schizosaccharomyces p... [more]
KIF4B_HUMAN3.221e-2346.53Chromosome-associated kinesin KIF4B OS=Homo sapien... [more]
KIF1C_RAT4.207e-2343.83Kinesin-like protein KIF1C OS=Rattus norvegicus GN... [more]
KIF1B_RAT4.207e-2342.42Kinesin-like protein KIF1B OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A05-B10-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675400 ID=CX675400; Name=CX675400; organism=Citrus sinensis; type=EST; length=809bp
TTTTTTTTTAACAGAGTGAAAAGGACTCAATTTCACTATCAATAAAAGTA
CATATTACAGAAATTGCTTCCGCGGTTCTACCTTCAAATTGTATTCATCA
ACTGATGAACTTTGTCATACAACAAACAATAGTCACCTTTATAAGCCAAT
AAATTAACTATCATGCAATGAAAAGCAAAATTAAGATCCTATAATCTCAC
CATGACAACCCACTCCAGTGCATGTGGGACACAGTCATTATGAACATGAC
AAAGTAAACACGTCAGTATTTCAACCATAACTCAACCGAGAATCAGCAGC
CTTCAAAGTCAATTGGCGACTGGGAACCCCAATTTCGCAGGCATTGACTC
TCGCAGCAAACCGTAGAGAGCAAAGGGACTCACCAACGGACGGAGAATCA
GGCGAGATGTTAACAAACATTAAAGTTTTAGAATCTCTCCCAAGACACGG
CTGAAGAAGATATGTCAGCTTCGAGTTCCTATATGGAATATGATCCTCCT
TCTTTGCCAAGGCAAATATAACATCACTCAATGATGACAGGCTTTTATTT
ATGGCCTGAGTTTCTTTCAAACGGTCACCAGTCGCCCCACTTCTTGATAA
TCGCTCACTTCCAGCTAGATCAATGAGGTTTAAGACACCCTGTACTTGTT
GTTCAGTTGCTTCATTTACTCCAAATATTCGTAACGTGAAGACAAAATGG
CTTCTTGATGAATACTCATTCATTTGAGTCTTGCCCACAGACCTGCTCTG
TGCAGCCTGCCTTAAAAGCGATGAAATCTCTGATATGCTACAGACATCAA
CAATCGTAA
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