CK937911

Overview
NameCK937911
Unique NameCK937911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.450e-34
Identity = 67/133 (50.38%), Postives = 88/133 (66.17%), Query Frame = 3
Query:  213 ASKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 611
            A KR++ + K LQKDPP   S  P   ++ H  A I GP D+P+ GG F +T+HF  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ VL SI SLL DPNPD P   E A ++  +K +Y
Sbjct:    5 AKKRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREY 137          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.104e-33
Identity = 68/144 (47.22%), Postives = 95/144 (65.97%), Query Frame = 3
Query:  219 KRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 650
            +RI++E + L  +P     A P   +  +    I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KS++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYAM 149          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.104e-33
Identity = 69/143 (48.25%), Postives = 95/143 (66.43%), Query Frame = 3
Query:  219 KRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 647
            KRI++E + L  +P    SA P  ++  + +  I GP DSP+ GGVF + +    DYP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++ +  A AR WT+ YA
Sbjct:    6 KRIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYA 148          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.441e-33
Identity = 68/146 (46.58%), Postives = 97/146 (66.44%), Query Frame = 3
Query:  216 SKRILEELKDLQKDPPTSCSAGPVAE-DMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 647
            +KRI++E++ ++ DP    +   V+E D+ H + T +GPP +PY GG F+V I  P +YPFKPPK+ F TKV+HPNI+S  G+ICLDILK  WSP +T+   L+S+ +LL  P P+DP   E+A  Y  D+  +  TA  WT+ YA
Sbjct:    4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 149          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.458e-33
Identity = 67/144 (46.53%), Postives = 95/144 (65.97%), Query Frame = 3
Query:  219 KRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 650
            +RI++E + L  +P     A P   +  +    I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.458e-33
Identity = 67/144 (46.53%), Postives = 95/144 (65.97%), Query Frame = 3
Query:  219 KRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 650
            +RI++E + L  +P     A P   +  +    I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.458e-33
Identity = 67/144 (46.53%), Postives = 95/144 (65.97%), Query Frame = 3
Query:  219 KRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 650
            +RI++E + L  +P     A P   +  +    I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.458e-33
Identity = 67/144 (46.53%), Postives = 95/144 (65.97%), Query Frame = 3
Query:  219 KRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 650
            +RI++E + L  +P     A P   +  +    I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.477e-33
Identity = 65/144 (45.14%), Postives = 95/144 (65.97%), Query Frame = 3
Query:  219 KRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 650
            KRI++E++ L +DPP    A P  +++ + + T+ GP  S Y GG F + +  P +YP  PP V F TK++HPN++  G ICL  LK+ WSPAL I  VLLSI +L+  PNPDDPL  ++A ++K ++ +  A AR WT+KYA+
Sbjct:    5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKYAV 148          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 9.342e-33
Identity = 64/145 (44.14%), Postives = 92/145 (63.45%), Query Frame = 3
Query:  216 SKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 647
            S+RI +EL D+Q+D         + +D+ H +    GP  +PY GG F+V I  P DYPF+PPK+ F TK++HPN++S  G+ICLDILK+QWSP  T+   L+S+ SLL  P P +P   ++A +Y  +  ++  TAR WT  YA
Sbjct:    6 SRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYA 150          
The following BLAST results are available for this feature:
BLAST of CK937911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
UBC3_ARATH8.450e-3450.38Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBE2N_RAT1.104e-3347.22Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_DICDI1.104e-3348.25Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBC1_YEAST1.441e-3346.58Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBE2N_PONAB2.458e-3346.53Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE2.458e-3346.53Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN2.458e-3346.53Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN2.458e-3346.53Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBC13_SCHPO5.477e-3345.14Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC1_SCHPO9.342e-3344.14Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004480_D04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937911 ID=CK937911; Name=CK937911; organism=Citrus sinensis; type=EST; length=780bp
GGGGCTCTCTCAACGACTTTTGCCTTGAATAACAAAGGCAAGAGATTGTA
GAGGAGAGAGGTCGGGACGGCCAGTAGCCGCCGCAGATCTGCTCCGAAGC
CGTTCCCCTTTCTCACTGCTATTGCCCTCCGATCTCCTTCTTCGCCGCAC
AAGTGTTGCAGATCCTAGGTTTGTTGTGGCTTTAACTTTTAATAATCCGT
TGAAGCATCATGGCTTCGAAGCGTATTTTGGAGGAACTCAAGGATTTGCA
GAAGGATCCTCCCACGTCTTGCAGCGCTGGTCCGGTGGCTGAAGACATGT
TCCATCGGCAAGCAACAATTATGGGCCCCCCTGATAGTCCATATGCAGGA
GGTGTATTTTTGGTTACCATTCATTTTCCTCCAGATTATCCCTTCAAGCC
CCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACCCAAACATCAACAGCA
ATGGAAGCATATGTCTTGATATCCTTAAAGAACAGTGGAGCCCAGCTCTT
ACCATTTCAAAGGTCCTGCTTTCTATCTGCTCGTTGCTTACTGACCCAAA
TCCTGACGACCCGCTTGTACCGGAGATTGCTCACATGTACAAGTCCGACA
AGGCCAAATATGAAGCCACTGCCAGGAGCTGGACACAGAAGTATGCCATG
GGATAGTTGTTTGGATATTGCAGAAATGGAACTCATTTATATGAAATATG
TTGTGTTTTTTTCTCCTTTTTCTTCAATCTTGCTTCGGGAAGGGGATGTT
TTGTATTTTAGTAATGAGGAAGGATGTTTG
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