CK937911

Overview
NameCK937911
Unique NameCK937911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.220e-32
Identity = 69/149 (46.31%), Postives = 92/149 (61.74%), Query Frame = 3
Query:  204 SIMASKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSWT 635
            S  A KR++ + K LQ+DPP   S  P   ++    A I GP D+P+ GG F +T+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY  +K +Y     E   +SWT
Sbjct:    2 STPARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQSWT 150          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.081e-32
Identity = 67/143 (46.85%), Postives = 93/143 (65.03%), Query Frame = 3
Query:  219 KRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 647
            KRI++E + L  DP    +A P  +++ + Q TI GP  SPY  G+F + ++ P DYP + PKV F TK++HPNI+  G ICLD+LK  WSPAL I  VLLSI +LL  PNP+DPL  ++A  +  ++   +A AR WT+ YA
Sbjct:    6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 148          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.550e-32
Identity = 68/149 (45.64%), Postives = 90/149 (60.40%), Query Frame = 3
Query:  204 SIMASKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATAR-----SWT 635
            S  A KR++ + K LQ+DPP   S  P   ++    A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY   K +Y    R     SWT
Sbjct:    2 STPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.055e-32
Identity = 67/149 (44.97%), Postives = 91/149 (61.07%), Query Frame = 3
Query:  204 SIMASKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSWT 635
            S  A KR++ + K LQ+DPP   S  P   ++    A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+   K +Y     E   +SWT
Sbjct:    2 STPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQSWT 150          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 7.909e-32
Identity = 63/146 (43.15%), Postives = 92/146 (63.01%), Query Frame = 3
Query:  204 SIMASKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 641
            S  A +R++ + K LQ+DPPT  S  P   ++    A I GP D+P+  G F +TI F  +YP KPP V F +KVFHPN+ ++G ICLDIL+ +WSP   +S +L SI SLL+DPNP+ P     A +YK ++ +YE   ++  ++
Sbjct:    2 STPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQ 147          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.909e-32
Identity = 67/149 (44.97%), Postives = 91/149 (61.07%), Query Frame = 3
Query:  204 SIMASKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSWT 635
            S  A KR++ + K LQ DPP   S  P   ++    A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  +K +Y     E   +SWT
Sbjct:    2 STPARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQSWT 150          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.349e-31
Identity = 61/146 (41.78%), Postives = 96/146 (65.75%), Query Frame = 3
Query:  213 ASKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 647
            +S+R+ +E  DL++ P        V +++FH   T +GP DS YAGG F  ++ FP DYPF+PP + F T+++HPN +S G++CL ILK+Q + P++ +  VL  I  LL +PNPDDPLV  IA  Y++D+  ++  AR + +++A
Sbjct:    8 SSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQFA 153          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.340e-30
Identity = 60/148 (40.54%), Postives = 90/148 (60.81%), Query Frame = 3
Query:  204 SIMASKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSW 632
            S  A +R++ + K +Q DPP   SA PVA+++    A I+GP D+P+  G F + +HF   YP KPP V F +++FHPN+   G +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E +++YK ++ +Y     E   +SW
Sbjct:    2 STSARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRETVEKSW 149          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.668e-30
Identity = 66/147 (44.90%), Postives = 94/147 (63.95%), Query Frame = 3
Query:  222 RILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 650
            R+  EL+ L K+PP          +M   +A I+G   SPY GG+F + I  P  YPF+PPK+ F T ++HPNI+S G ICLDIL    K  W PAL IS VL SI  L+++PNPDDPL+ +I+  +K ++A + + A+ WT+K+A+
Sbjct:    6 RLKRELQLLNKEPPPGVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVFFSNAKKWTEKHAL 152          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.668e-30
Identity = 60/137 (43.80%), Postives = 87/137 (63.50%), Query Frame = 3
Query:  204 SIMASKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 614
            S  A +R++ + K LQ+DPP   S  P   ++    A I GP  +P+  G F +TI F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:    2 STPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
The following BLAST results are available for this feature:
BLAST of CK937911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
UBC2_WHEAT1.220e-3246.31Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC13_YEAST2.081e-3246.85Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBC1_ARATH3.550e-3245.64Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC2_ARATH6.055e-3244.97Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBCD6_DROME7.909e-3243.15Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_MEDSA7.909e-3244.97Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC14_SCHPO1.349e-3141.78Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC2_ASPFU4.340e-3040.54Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBE2T_XENLA5.668e-3044.90Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBE2A_MOUSE5.668e-3043.80Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004480_D04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937911 ID=CK937911; Name=CK937911; organism=Citrus sinensis; type=EST; length=780bp
GGGGCTCTCTCAACGACTTTTGCCTTGAATAACAAAGGCAAGAGATTGTA
GAGGAGAGAGGTCGGGACGGCCAGTAGCCGCCGCAGATCTGCTCCGAAGC
CGTTCCCCTTTCTCACTGCTATTGCCCTCCGATCTCCTTCTTCGCCGCAC
AAGTGTTGCAGATCCTAGGTTTGTTGTGGCTTTAACTTTTAATAATCCGT
TGAAGCATCATGGCTTCGAAGCGTATTTTGGAGGAACTCAAGGATTTGCA
GAAGGATCCTCCCACGTCTTGCAGCGCTGGTCCGGTGGCTGAAGACATGT
TCCATCGGCAAGCAACAATTATGGGCCCCCCTGATAGTCCATATGCAGGA
GGTGTATTTTTGGTTACCATTCATTTTCCTCCAGATTATCCCTTCAAGCC
CCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACCCAAACATCAACAGCA
ATGGAAGCATATGTCTTGATATCCTTAAAGAACAGTGGAGCCCAGCTCTT
ACCATTTCAAAGGTCCTGCTTTCTATCTGCTCGTTGCTTACTGACCCAAA
TCCTGACGACCCGCTTGTACCGGAGATTGCTCACATGTACAAGTCCGACA
AGGCCAAATATGAAGCCACTGCCAGGAGCTGGACACAGAAGTATGCCATG
GGATAGTTGTTTGGATATTGCAGAAATGGAACTCATTTATATGAAATATG
TTGTGTTTTTTTCTCCTTTTTCTTCAATCTTGCTTCGGGAAGGGGATGTT
TTGTATTTTAGTAATGAGGAAGGATGTTTG
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