CK937911

Overview
NameCK937911
Unique NameCK937911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.813e-29
Identity = 65/144 (45.14%), Postives = 94/144 (65.28%), Query Frame = 3
Query:  222 RILEELKDLQKDPPTS-CSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 647
            RI +EL+D +++  +S     P ++++     TI GP  +PY GG F + I  P  YPF+PPK+ F TKV+HPNI+S +G+ICLDILK+QWSPALT+   L+SI +LL+ P P DP    +A  Y  +   + +TAR WT+ +A
Sbjct:    6 RIQKELQDCERNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKNYQVFVSTARYWTETFA 149          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.674e-29
Identity = 58/146 (39.73%), Postives = 88/146 (60.27%), Query Frame = 3
Query:  204 SIMASKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQK 641
            S  A +R++ + K +Q DPP   SA PV +++    A I+GP D+P+  G F + +HF   YP KPP V F +++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN       E +++YK ++ +Y    R   +K
Sbjct:    2 STAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRETVEK 147          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 4.798e-29
Identity = 67/150 (44.67%), Postives = 91/150 (60.67%), Query Frame = 3
Query:  210 MASKRILEELKDLQKDPPTS---CSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 647
            +A +RI  E K++ K   TS        V E+    +  I GPPD+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:    4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 4.798e-29
Identity = 67/150 (44.67%), Postives = 91/150 (60.67%), Query Frame = 3
Query:  210 MASKRILEELKDLQKDPPTS---CSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 647
            +A +RI  E K++ K   TS        V E+    +  I GPPD+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:    4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 4.798e-29
Identity = 67/150 (44.67%), Postives = 91/150 (60.67%), Query Frame = 3
Query:  210 MASKRILEELKDLQKDPPTS---CSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 647
            +A +RI  E K++ K   TS        V E+    +  I GPPD+PY GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:    4 IAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.798e-29
Identity = 62/149 (41.61%), Postives = 90/149 (60.40%), Query Frame = 3
Query:  204 SIMASKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSWT 635
            S  A +R++ + K LQ DPP   S  P+  ++   QA I GP DS + G  F +++ F  +YP   P V F +K+FHPN+ ++GSICLDIL+ QWSP   I+ +L SI SLL DPNP+ P   E A +++ +K +Y     E   +SW+
Sbjct:    2 STAARRRLMRDFKRLQSDPPAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKEIVEQSWS 150          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.266e-29
Identity = 59/148 (39.86%), Postives = 90/148 (60.81%), Query Frame = 3
Query:  204 SIMASKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSW 632
            S  A +R++ + K +++D P   SA P+ +++    A I+GP D+PY  G F + + F  DYP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  K++Y     E   +SW
Sbjct:    2 STPARRRLMRDFKRMKEDSPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKETVEKSW 149          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.266e-29
Identity = 58/148 (39.19%), Postives = 91/148 (61.49%), Query Frame = 3
Query:  204 SIMASKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSW 632
            S  A +R++ + K +Q+DPP+  SA P+ +++    A I+GP D+P+  G F + + F   YP KPP+V F +++FHPN+ ++G +CLDIL+ +WSP   +S +L S+ SLL DPN   P   E A++YK  ++ Y     E    SW
Sbjct:    2 STPARRRLMRDFKRMQQDPPSGVSASPLPDNVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYKDHRSLYVKRVRETVENSW 149          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.184e-29
Identity = 58/150 (38.67%), Postives = 91/150 (60.67%), Query Frame = 3
Query:  204 SIMASKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSWTQ 638
            S  A +R++ + K +Q+D P+  SA P+ +++    A I+GP D+P+  G F + + F   YP KPP V F +++FHPN+ ++G +CLDIL+ +WSP   +S +L SI SLL DPN   P   E A++YK  +++Y     E    SW +
Sbjct:    2 STPAKRRLMRDFKRMQQDAPSGVSASPLPDNVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRETVENSWNE 151          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.396e-28
Identity = 57/136 (41.91%), Postives = 83/136 (61.03%), Query Frame = 3
Query:  204 SIMASKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 611
            S  + KR++ + K L  DPP   S  P A+++    A I GP D+P+  G F + + F   YP KPP V F +K+FHPN+ +NG +CLDIL+ +WSP   ++ +L SI SLL DPNP+ P   E A +Y+ +  +Y
Sbjct:    2 STPSKKRLIRDFKRLSTDPPGGISGAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEY 137          
The following BLAST results are available for this feature:
BLAST of CK937911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
UBC27_ARATH2.813e-2945.14Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBC2_NEUCR3.674e-2939.73Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBE2K_MOUSE4.798e-2944.67Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN4.798e-2944.67Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN4.798e-2944.67Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBC2_DICDI4.798e-2941.61Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC2_CANGA6.266e-2939.86Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC2_CANAL6.266e-2939.19Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBC2_DEBHA8.184e-2938.67Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC2_USTMA1.396e-2841.91Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004480_D04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937911 ID=CK937911; Name=CK937911; organism=Citrus sinensis; type=EST; length=780bp
GGGGCTCTCTCAACGACTTTTGCCTTGAATAACAAAGGCAAGAGATTGTA
GAGGAGAGAGGTCGGGACGGCCAGTAGCCGCCGCAGATCTGCTCCGAAGC
CGTTCCCCTTTCTCACTGCTATTGCCCTCCGATCTCCTTCTTCGCCGCAC
AAGTGTTGCAGATCCTAGGTTTGTTGTGGCTTTAACTTTTAATAATCCGT
TGAAGCATCATGGCTTCGAAGCGTATTTTGGAGGAACTCAAGGATTTGCA
GAAGGATCCTCCCACGTCTTGCAGCGCTGGTCCGGTGGCTGAAGACATGT
TCCATCGGCAAGCAACAATTATGGGCCCCCCTGATAGTCCATATGCAGGA
GGTGTATTTTTGGTTACCATTCATTTTCCTCCAGATTATCCCTTCAAGCC
CCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACCCAAACATCAACAGCA
ATGGAAGCATATGTCTTGATATCCTTAAAGAACAGTGGAGCCCAGCTCTT
ACCATTTCAAAGGTCCTGCTTTCTATCTGCTCGTTGCTTACTGACCCAAA
TCCTGACGACCCGCTTGTACCGGAGATTGCTCACATGTACAAGTCCGACA
AGGCCAAATATGAAGCCACTGCCAGGAGCTGGACACAGAAGTATGCCATG
GGATAGTTGTTTGGATATTGCAGAAATGGAACTCATTTATATGAAATATG
TTGTGTTTTTTTCTCCTTTTTCTTCAATCTTGCTTCGGGAAGGGGATGTT
TTGTATTTTAGTAATGAGGAAGGATGTTTG
back to top