CK937911

Overview
NameCK937911
Unique NameCK937911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.396e-28
Identity = 54/132 (40.91%), Postives = 87/132 (65.91%), Query Frame = 3
Query:  219 KRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 614
            +R++ + K LQ+DPP   S  P  +++   +A I GP ++P+  G F +++ F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   ++ +L SI SLL +PNP+ P     A +Y+ ++ +YE
Sbjct:    7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYE 138          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.823e-28
Identity = 58/148 (39.19%), Postives = 90/148 (60.81%), Query Frame = 3
Query:  204 SIMASKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSW 632
            S  A +R++ + K +++D P   SA P+ +++    A I+GP D+PY  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  K++Y     E   +SW
Sbjct:    2 STPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.823e-28
Identity = 57/141 (40.43%), Postives = 87/141 (61.70%), Query Frame = 3
Query:  204 SIMASKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATAR 626
            S  A +R++ + K +Q+DPP   SA PV++++    A I+GP D+P+  G F + + F   YP KPP V F + +FHPN+ +NG +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E A +++ +K +Y    R
Sbjct:    2 STTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEYVRRVR 142          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.823e-28
Identity = 58/148 (39.19%), Postives = 90/148 (60.81%), Query Frame = 3
Query:  204 SIMASKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSW 632
            S  A +R++ + K +++D P   SA P+ +++    A I+GP D+PY  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  K++Y     E   +SW
Sbjct:    2 STPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.305e-28
Identity = 57/148 (38.51%), Postives = 90/148 (60.81%), Query Frame = 3
Query:  204 SIMASKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----EATARSW 632
            S  A +R++ + K +++D P   SA P+ +++    A I+GP D+PY  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A +++  K++Y     E   +SW
Sbjct:    2 STPARRRLMRDFKRMKEDSPPGVSASPLPDNVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEKSW 149          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.182e-27
Identity = 59/148 (39.86%), Postives = 90/148 (60.81%), Query Frame = 3
Query:  216 SKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 647
            + R+  EL  L  +PP   +     + M   +A I+G  ++PY  GVF + +H P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ +L  I  L+ +PNPDDPL+ +I+  +K +K  +   AR WT+K+A
Sbjct:    4 TSRLKRELSLLAAEPPPGITCWQDGDRMEDLRAQILGGANTPYEKGVFKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEKHA 151          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.016e-27
Identity = 60/148 (40.54%), Postives = 91/148 (61.49%), Query Frame = 3
Query:  216 SKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 647
            + R+  EL  L  +PP   +     + M   +A I+G  ++PY  GVF + +  P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ VL SI  L+++PNPDDPL+ +I+  +K +K  +   AR WT+K+A
Sbjct:    4 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHA 151          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.633e-27
Identity = 56/137 (40.88%), Postives = 83/137 (60.58%), Query Frame = 3
Query:  204 SIMASKRILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 614
            S  A +R++ + K L  D P   S  P  +++    A I GPP++P+  G F +T+ F   YP KPP V F +K+FHPNI +NG +CLDIL+ +WSP   ++ +L S+ SLL DPNP  P   + A ++K +  +YE
Sbjct:    2 STAAKRRLIRDFKRLTSDAPIGISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYE 138          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.865e-27
Identity = 64/152 (42.11%), Postives = 88/152 (57.89%), Query Frame = 3
Query:  210 MASKRILEELKDLQKDPPT---SCSAGPVAEDMFHRQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAMG 653
            MA  RI  E K++ +       S     V +     +  I GPPD+PY GG F++ I  P  YPF PPKV F T+++HPNI+S  G+ICLDILK+ W+ A+T+  VLLS+ +LL    PDDP    +A+ +K     +  TA+ WT  YA G
Sbjct:    4 MAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWTNAYAGG 155          
BLAST of CK937911 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.706e-26
Identity = 62/144 (43.06%), Postives = 87/144 (60.42%), Query Frame = 3
Query:  222 RILEELKDLQKDPPTSCSAGPVAEDMFHRQATIMGPP-DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 650
            RI++E + L  +P     A P   +  +    I G   DSP+ GG F   +    +YP   PKV F TK++HPN++    I LDILK++WSPAL I  VLLSI +LL  PNPDDPL  ++   +K+++A+   TAR+WT+ YAM
Sbjct:    7 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQAIETARAWTRLYAM 150          
The following BLAST results are available for this feature:
BLAST of CK937911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
UBC1_CAEEL1.396e-2840.91Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC2_YEAST1.823e-2839.19Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_SCHPO1.823e-2840.43Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC2_ASHGO1.823e-2839.19Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBC2_KLULA5.305e-2838.51Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBE2T_BOVIN1.182e-2739.86Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UBE2T_HUMAN2.016e-2740.54Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBC2_CRYNE2.633e-2740.88Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBCD4_DROME5.865e-2742.11Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UE2NL_HUMAN1.706e-2643.06Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004480_D04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937911 ID=CK937911; Name=CK937911; organism=Citrus sinensis; type=EST; length=780bp
GGGGCTCTCTCAACGACTTTTGCCTTGAATAACAAAGGCAAGAGATTGTA
GAGGAGAGAGGTCGGGACGGCCAGTAGCCGCCGCAGATCTGCTCCGAAGC
CGTTCCCCTTTCTCACTGCTATTGCCCTCCGATCTCCTTCTTCGCCGCAC
AAGTGTTGCAGATCCTAGGTTTGTTGTGGCTTTAACTTTTAATAATCCGT
TGAAGCATCATGGCTTCGAAGCGTATTTTGGAGGAACTCAAGGATTTGCA
GAAGGATCCTCCCACGTCTTGCAGCGCTGGTCCGGTGGCTGAAGACATGT
TCCATCGGCAAGCAACAATTATGGGCCCCCCTGATAGTCCATATGCAGGA
GGTGTATTTTTGGTTACCATTCATTTTCCTCCAGATTATCCCTTCAAGCC
CCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACCCAAACATCAACAGCA
ATGGAAGCATATGTCTTGATATCCTTAAAGAACAGTGGAGCCCAGCTCTT
ACCATTTCAAAGGTCCTGCTTTCTATCTGCTCGTTGCTTACTGACCCAAA
TCCTGACGACCCGCTTGTACCGGAGATTGCTCACATGTACAAGTCCGACA
AGGCCAAATATGAAGCCACTGCCAGGAGCTGGACACAGAAGTATGCCATG
GGATAGTTGTTTGGATATTGCAGAAATGGAACTCATTTATATGAAATATG
TTGTGTTTTTTTCTCCTTTTTCTTCAATCTTGCTTCGGGAAGGGGATGTT
TTGTATTTTAGTAATGAGGAAGGATGTTTG
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