CK937878

Overview
NameCK937878
Unique NameCK937878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_CHICK (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Gallus gallus GN=UQCRFS1 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.678e-26
Identity = 66/169 (39.05%), Postives = 95/169 (56.21%), Query Frame = 3
Query:  297 ESLTPRN-EESLVPGV----PATVAAVKNPTSKIVYDEYNHERYPPGDPS-------KRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            ES++ R+    LV G+    PA+V  V N  +   +  Y  E       S       ++ F+Y V        A   + ++ +F+ S+SAS DVLA++ +E+ LS I  G  V  KWRGKP+F+R RT+ +I     VD+  LRDPQ D +RVK PEW+++VGVCTHLG
Sbjct:   51 ESMSGRSARRDLVAGISLNAPASVRYVHNDVTVPDFSAYRREDVMDATTSSQTSSEDRKGFSYLVTATACVATAYAAKNVVTQFISSLSASADVLALSKIEIKLSDIPEGKNVAFKWRGKPLFVRHRTQAEINQEAEVDVSKLRDPQHDLDRVKKPEWVILVGVCTHLG 219          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_CERAE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cercopithecus aethiops GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.192e-26
Identity = 64/152 (42.11%), Postives = 93/152 (61.18%), Query Frame = 3
Query:  339 VPATVAAVKNPTSKIVYDEYNHERYPPGDPSK---------RAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            VPA+V    + T   V D Y++ R    D +K         + F+Y V        A   + ++ +F+ SMSAS DVLAMA +E++LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLG
Sbjct:   72 VPASVCY--SHTDVKVPDFYDYRRLEVLDSTKSSRESSEARKGFSYLVTAVTTVGVAYAAKNVVTQFISSMSASADVLAMAKIEINLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEEEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLG 221          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_THEGE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Theropithecus gelada GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.738e-26
Identity = 63/152 (41.45%), Postives = 92/152 (60.53%), Query Frame = 3
Query:  339 VPATVAAVKNPTSKIVYDEYNHERYPPGDPSK---------RAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            VPA+V    + T   V D Y++ R    D +K         + F+Y V        A   +  + +F+ SMSAS DVLAMA +E++LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++G+CTHLG
Sbjct:   72 VPASVCY--SHTDVKVPDFYDYRRLEVLDSTKSSRESSEARKGFSYLVTAVTTVGVAYAAKNAVTQFISSMSASADVLAMAKIEINLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGICTHLG 221          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_PONPY (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pongo pygmaeus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.882e-26
Identity = 54/113 (47.79%), Postives = 79/113 (69.91%), Query Frame = 3
Query:  429 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            +++ F+Y V        A   + ++ +FV SMSAS DVLA+A +E+ LS I  G  +T KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLG
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNVVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMTFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLG 221          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_COLPO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Colobus polykomos GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.882e-26
Identity = 55/113 (48.67%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  429 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            ++++F+Y V        A   +  + +FV SMSAS DVLAMA +EV LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLG
Sbjct:  109 ARKSFSYMVTAVTTVGVAYAAKNAVTQFVSSMSASADVLAMAKIEVKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLG 221          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_LAGLA (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Lagothrix lagotricha GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.376e-26
Identity = 52/113 (46.02%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  429 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            +++ F+Y V            + ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLG
Sbjct:  109 ARKGFSYLVTAATAVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLG 221          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_AOTAZ (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Aotus azarai GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.088e-25
Identity = 52/113 (46.02%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  429 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            +++ F+Y V            + ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLG
Sbjct:  109 ARKGFSYLVTATTAVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLG 221          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRIL_HUMAN (Cytochrome b-c1 complex subunit Rieske-like protein 1 OS=Homo sapiens GN=UQCRFSL1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.088e-25
Identity = 54/113 (47.79%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  429 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++IK   +V+L  LRDPQ D +RVK PEW++++GVCTHLG
Sbjct:  118 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIKQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLG 230          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_SAISC (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saimiri sciureus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.420e-25
Identity = 51/113 (45.13%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  429 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            +++ F+Y V            + ++ +F+ SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLG
Sbjct:  109 ARKVFSYMVTATTAVGVTYAAKSIVTQFISSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLG 221          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_HYLSY (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Hylobates syndactylus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.855e-25
Identity = 53/113 (46.90%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  429 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLG
Sbjct:  109 ARKGFSYLVTAVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKRPEWVILIGVCTHLG 221          
The following BLAST results are available for this feature:
BLAST of CK937878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
UCRI_CHICK1.678e-2639.05Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_CERAE2.192e-2642.11Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_THEGE3.738e-2641.45Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PONPY4.882e-2647.79Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_COLPO4.882e-2648.67Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_LAGLA6.376e-2646.02Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_AOTAZ1.088e-2546.02Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRIL_HUMAN1.088e-2547.79Cytochrome b-c1 complex subunit Rieske-like protei... [more]
UCRI_SAISC1.420e-2545.13Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_HYLSY1.855e-2546.90Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004480_H10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937878 ID=CK937878; Name=CK937878; organism=Citrus sinensis; type=EST; length=768bp
GCGGGGGCTGTTTCACCCATTTTCCCAAAATNNNGCGAAAAGCGAGAGNN
NNATAACACCAATCGCCATTTCGAAGAGATAATCAGAGAGAGATTTTGAA
GATGTTGAGGGTCGCGGCGAGAAGGCTCTTATCACCATCCTCATCATCGT
CATTGAGGCCCATCGCATCGTCTCGGAATATAATTAACGGCGCCGGTTCA
TCGTCCTCCTCCAACGATGATTTCAGATCCAACGGCTTCTATGGCTCCGG
ATATCTTGGACCTCAGTTTCAACTTCCTTGCCGAGGTTTTTCTTCTGAGT
CACTGACACCAAGAAATGAAGAAAGCCTGGTTCCAGGTGTTCCAGCAACA
GTGGCAGCTGTTAAGAATCCCACTTCTAAGATAGTATATGATGAATACAA
TCATGAACGTTATCCTCCAGGTGACCCCAGCAAGCGGGCATTTGCCTACT
TTGTCCTGACTGGTGGTAGGTTTGTGTATGCTTCACTCATCCGTCTACTT
ATCCTTAAATTTGTACTGAGCATGTCAGCGAGTAAGGATGTTCTTGCTAT
GGCCTCTCTTGAGGTTGATCTGTCCAGCATTGAGCCAGGCAGCACAGTGA
CTGTTAAGTGGCGGGGCAAGCCAGTTTTCATCAGACGTCGGACTGAGGAA
GATATCAAGCTGGCCAACAGTGTTGATTTGGGATCTCTTCGTGATCCTCA
GCAAGACGCTGAGAGGGTTAAAAACCCGGAGTGGCTTGTAGTTGTTGGGG
TCTGCACACATCTTGGTT
back to top