CK937878

Overview
NameCK937878
Unique NameCK937878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_BOVIN (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Bos taurus GN=UQCRFS1 PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 2.423e-25
Identity = 53/113 (46.90%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  429 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            +++ F+Y V        A   + ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I    +V++  LRDPQ D ERVK PEW++++GVCTHLG
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLG 221          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_PANTR (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pan troglodytes GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.165e-25
Identity = 53/113 (46.90%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  429 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLG
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLG 221          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_PANPA (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pan paniscus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.165e-25
Identity = 53/113 (46.90%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  429 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLG
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLG 221          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_HUMAN (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Homo sapiens GN=UQCRFS1 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.165e-25
Identity = 53/113 (46.90%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  429 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLG
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLG 221          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_GORGO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Gorilla gorilla gorilla GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.165e-25
Identity = 53/113 (46.90%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  429 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+L  LRDPQ D +RVK PEW++++GVCTHLG
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLG 221          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_RAT (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Rattus norvegicus GN=Uqcrfs1 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 4.133e-25
Identity = 53/113 (46.90%), Postives = 76/113 (67.26%), Query Frame = 3
Query:  429 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            +++ F+Y V        A   +  + +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I    +V++  LRDPQ D ERVK PEW++++GVCTHLG
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNAVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLG 221          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_MOUSE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Mus musculus GN=Uqcrfs1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.398e-25
Identity = 52/113 (46.02%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  429 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            +++ F+Y V        A   + ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I    +V++  LRDPQ D +RVK PEW++++GVCTHLG
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLDRVKKPEWVILIGVCTHLG 221          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_RHORU (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodospirillum rubrum GN=petA PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 7.050e-25
Identity = 60/125 (48.00%), Postives = 80/125 (64.00%), Query Frame = 3
Query:  393 EYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNPEWLVVVGVCTHLG 767
            E  H    PG  S R    F++ G   V A  + L +  F+  M+ + D LA+AS EVD+S+I  G  +TV WRGKPVF+R RT+++I +A +VD  SLRDPQ D  RV+  +WLV+VGVCTHLG
Sbjct:    3 EAEHTASTPGGESSRRD--FLIYGTTAVGAVGVALAVWPFIDFMNPAADTLALASTEVDVSAIAEGQAITVTWRGKPVFVRHRTQKEIVVARAVDPASLRDPQTDEARVQQAQWLVMVGVCTHLG 125          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_RICBR (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia bellii (strain RML369-C) GN=petA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.797e-20
Identity = 55/128 (42.97%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  390 DEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTHLG 767
            D  N  +    D SK +   F++     V A      +   + S++ S DVLA++S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A +V +  L DP++D +RVK  +  WLV +G+CTHLG
Sbjct:    6 DTNNDNKVEFEDRSKTSRRDFMVLTASSVAAVGAACTLWPLINSLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPEEDQDRVKAGHDNWLVTIGICTHLG 133          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_RICTY (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia typhi GN=petA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.521e-19
Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 3
Query:  519 SMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTHLG 767
            S++ S DVLA++S+EVDLSSI  G TVTVKW+GKP+FI  RT + I  A +V +  L DP++D  RVK  +  WLV +G+CTHLG
Sbjct:   40 SLNPSTDVLALSSIEVDLSSIAIGQTVTVKWQGKPIFITNRTPDGIASARAVKMSELIDPEKDEVRVKAGHDNWLVTIGICTHLG 124          
The following BLAST results are available for this feature:
BLAST of CK937878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
UCRI_BOVIN2.423e-2546.90Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PANTR3.165e-2546.90Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PANPA3.165e-2546.90Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_HUMAN3.165e-2546.90Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_GORGO3.165e-2546.90Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_RAT4.133e-2546.90Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_MOUSE5.398e-2546.02Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_RHORU7.050e-2548.00Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICBR1.797e-2042.97Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICTY1.521e-1955.29Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004480_H10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937878 ID=CK937878; Name=CK937878; organism=Citrus sinensis; type=EST; length=768bp
GCGGGGGCTGTTTCACCCATTTTCCCAAAATNNNGCGAAAAGCGAGAGNN
NNATAACACCAATCGCCATTTCGAAGAGATAATCAGAGAGAGATTTTGAA
GATGTTGAGGGTCGCGGCGAGAAGGCTCTTATCACCATCCTCATCATCGT
CATTGAGGCCCATCGCATCGTCTCGGAATATAATTAACGGCGCCGGTTCA
TCGTCCTCCTCCAACGATGATTTCAGATCCAACGGCTTCTATGGCTCCGG
ATATCTTGGACCTCAGTTTCAACTTCCTTGCCGAGGTTTTTCTTCTGAGT
CACTGACACCAAGAAATGAAGAAAGCCTGGTTCCAGGTGTTCCAGCAACA
GTGGCAGCTGTTAAGAATCCCACTTCTAAGATAGTATATGATGAATACAA
TCATGAACGTTATCCTCCAGGTGACCCCAGCAAGCGGGCATTTGCCTACT
TTGTCCTGACTGGTGGTAGGTTTGTGTATGCTTCACTCATCCGTCTACTT
ATCCTTAAATTTGTACTGAGCATGTCAGCGAGTAAGGATGTTCTTGCTAT
GGCCTCTCTTGAGGTTGATCTGTCCAGCATTGAGCCAGGCAGCACAGTGA
CTGTTAAGTGGCGGGGCAAGCCAGTTTTCATCAGACGTCGGACTGAGGAA
GATATCAAGCTGGCCAACAGTGTTGATTTGGGATCTCTTCGTGATCCTCA
GCAAGACGCTGAGAGGGTTAAAAACCCGGAGTGGCTTGTAGTTGTTGGGG
TCTGCACACATCTTGGTT
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