CK937878

Overview
NameCK937878
Unique NameCK937878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_RICPR (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia prowazekii GN=petA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.521e-19
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 3
Query:  519 SMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTHLG 767
            S + S DVLA++S+EVDLS+I  G TVTVKW+GKP+FI  RT ++I  A +V +  L DP++D  RVK  +  WLV +G+CTHLG
Sbjct:   40 SFNPSADVLALSSIEVDLSNIAIGQTVTVKWQGKPIFITNRTHDEIAAARAVKMSELIDPERDEVRVKAGHDNWLVTIGICTHLG 124          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_RHOCA (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter capsulatus GN=petA PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.521e-19
Identity = 54/102 (52.94%), Postives = 66/102 (64.71%), Query Frame = 3
Query:  522 MSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVKNP--------------------EWLVVVGVCTHLG 767
            M+AS DV AMAS+ VD+S++E G+ +TVKWRGKPVFIRRR E+DI+LA SV LG+LRD    AE    P                    EWLV++GVCTHLG
Sbjct:   38 MNASADVKAMASIFVDVSAVEVGTQLTVKWRGKPVFIRRRDEKDIELARSVPLGALRD--TSAENANKPGAEATDENRTLPAFDGTNTGEWLVMLGVCTHLG 137          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_PARDE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Paracoccus denitrificans GN=petA PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.987e-19
Identity = 54/126 (42.86%), Postives = 73/126 (57.94%), Query Frame = 3
Query:  429 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRD-----------PQQDAERVKNP--EWLVVVGVCTHLG 767
            ++R F Y+   G   V A      ++     M+ S DV A+AS++VD+S +E G+ +TVKW GKPVFIRRRTE++I+    VDLG L D           P  D  R  +   EWLV++GVCTHLG
Sbjct:   14 TRRDFLYYATAGAGTVAAGAAAWTLVN---QMNPSADVQALASIQVDVSGVETGTQLTVKWLGKPVFIRRRTEDEIQAGREVDLGQLIDRSAQNSNKPDAPATDENRTMDEAGEWLVMIGVCTHLG 136          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_RICFE (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia felis GN=petA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.389e-19
Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 3
Query:  519 SMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTHLG 767
            S++ S DVLA++S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A +V +  L DP+ D  RVK  +  WLV +G+CTHLG
Sbjct:   40 SLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPETDEARVKAGHDNWLVTIGICTHLG 124          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_RICCN (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia conorii GN=petA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.389e-19
Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 3
Query:  519 SMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTHLG 767
            S++ S DVLA++S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A +V +  L DP+ D  RVK  +  WLV +G+CTHLG
Sbjct:   40 SLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPEADQARVKAGHDNWLVTIGICTHLG 124          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_RHOSH (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter sphaeroides GN=petA PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.410e-17
Identity = 53/127 (41.73%), Postives = 70/127 (55.12%), Query Frame = 3
Query:  429 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRD--------------PQQDAERVKNPEWLVVVGVCTHLG 767
            ++R F Y+   G   V        +   +  M+ S DV A+AS+ VD+SS+EPG  +TVK+ GKP+FIRRRTE DI+L  SV LG L D                Q+    +  EWLV+ GVCTHLG
Sbjct:   10 TRRDFLYYATAGAGAVATGAA---VWPLINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLG 133          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_BRAJA (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Bradyrhizobium japonicum GN=petA PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.056e-16
Identity = 50/117 (42.74%), Postives = 68/117 (58.12%), Query Frame = 3
Query:  426 PSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAM-ASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTHLG 767
            P++R F  FV TG          L    F+  M+     +A  A +EVDLS I  G  + V WRGKP++I  RT++ I  A +V++ SL DPQ D  RVK  + +WLVV+G+CTHLG
Sbjct:   10 PTRRDFL-FVATGAAAAVGGAAALW--PFISQMNPDASTIAAGAPIEVDLSPIAEGQDIKVFWRGKPIYISHRTKKQIDEARAVNVASLPDPQSDEARVKSGHEQWLVVIGICTHLG 123          
BLAST of CK937878 vs. ExPASy Swiss-Prot
Match: UCRI_RHOVI (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodopseudomonas viridis GN=petA PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.614e-15
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 3
Query:  423 DPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAM-ASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANSVDLGSLRDPQQDAERVK--NPEWLVVVGVCTHLG 767
            + ++R F Y        V A+ +  +   F+  M+     +A  A +++D+S +  G  V V WRGKP+FIR RT ++I+   + D+G+L DPQ D+ RVK    EWLVV   CTHLG
Sbjct:    8 EATRRDFLYVATAA---VGAAGVAAVAWPFITQMNPDAATIAAGAPIDIDISPVTEGQIVRVFWRGKPIFIRHRTAKEIQSEEAADVGALIDPQPDSARVKPGKAEWLVVYASCTHLG 122          
The following BLAST results are available for this feature:
BLAST of CK937878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
UCRI_RICPR1.521e-1954.12Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOCA1.521e-1952.94Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_PARDE1.987e-1942.86Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICFE3.389e-1955.29Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICCN3.389e-1955.29Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOSH5.410e-1741.73Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_BRAJA2.056e-1642.74Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RHOVI6.614e-1538.14Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004480_H10 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937878 ID=CK937878; Name=CK937878; organism=Citrus sinensis; type=EST; length=768bp
GCGGGGGCTGTTTCACCCATTTTCCCAAAATNNNGCGAAAAGCGAGAGNN
NNATAACACCAATCGCCATTTCGAAGAGATAATCAGAGAGAGATTTTGAA
GATGTTGAGGGTCGCGGCGAGAAGGCTCTTATCACCATCCTCATCATCGT
CATTGAGGCCCATCGCATCGTCTCGGAATATAATTAACGGCGCCGGTTCA
TCGTCCTCCTCCAACGATGATTTCAGATCCAACGGCTTCTATGGCTCCGG
ATATCTTGGACCTCAGTTTCAACTTCCTTGCCGAGGTTTTTCTTCTGAGT
CACTGACACCAAGAAATGAAGAAAGCCTGGTTCCAGGTGTTCCAGCAACA
GTGGCAGCTGTTAAGAATCCCACTTCTAAGATAGTATATGATGAATACAA
TCATGAACGTTATCCTCCAGGTGACCCCAGCAAGCGGGCATTTGCCTACT
TTGTCCTGACTGGTGGTAGGTTTGTGTATGCTTCACTCATCCGTCTACTT
ATCCTTAAATTTGTACTGAGCATGTCAGCGAGTAAGGATGTTCTTGCTAT
GGCCTCTCTTGAGGTTGATCTGTCCAGCATTGAGCCAGGCAGCACAGTGA
CTGTTAAGTGGCGGGGCAAGCCAGTTTTCATCAGACGTCGGACTGAGGAA
GATATCAAGCTGGCCAACAGTGTTGATTTGGGATCTCTTCGTGATCCTCA
GCAAGACGCTGAGAGGGTTAAAAACCCGGAGTGGCTTGTAGTTGTTGGGG
TCTGCACACATCTTGGTT
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