CK937871

Overview
NameCK937871
Unique NameCK937871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: SDCS_STAAM (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sdcS PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.884e-21
Identity = 49/123 (39.84%), Postives = 76/123 (61.79%), Query Frame = 3
Query:  270 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ 638
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM+P+   I++
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIK 181          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: SDCS_STAAC (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain COL) GN=sdcS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.884e-21
Identity = 49/123 (39.84%), Postives = 76/123 (61.79%), Query Frame = 3
Query:  270 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ 638
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM+P+   I++
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIK 181          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: SDCS_STAAB (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sdcS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.884e-21
Identity = 49/123 (39.84%), Postives = 76/123 (61.79%), Query Frame = 3
Query:  270 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ 638
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM+P+   I++
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIK 181          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: SDCS_STAA8 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain NCTC 8325) GN=sdcS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.884e-21
Identity = 49/123 (39.84%), Postives = 76/123 (61.79%), Query Frame = 3
Query:  270 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ 638
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM+P+   I++
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIK 181          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: SDCS_STAA3 (Sodium-dependent dicarboxylate transporter sdcS OS=Staphylococcus aureus (strain USA300) GN=sdcS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.884e-21
Identity = 49/123 (39.84%), Postives = 76/123 (61.79%), Query Frame = 3
Query:  270 MLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQ 638
            +L +  W+  WW+TEA+P+  TS+ P+ L PL  I + + V+  Y +D+I L LG FILA+A+E +N+H R+AL I  L          +LLG    T F+SM++ N AA +IM+P+   I++
Sbjct:   62 VLAITLWIATWWITEAIPIAATSLLPIVLLPLGHILTPEQVSSEYGNDIIFLFLGGFILAIAMERWNLHTRVALTIINLIGASTSK---ILLGFMVATGFLSMFVSNTAAVMIMIPIGLAIIK 181          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: S13A1_RAT (Solute carrier family 13 member 1 OS=Rattus norvegicus GN=Slc13a1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.884e-21
Identity = 46/122 (37.70%), Postives = 78/122 (63.93%), Query Frame = 3
Query:  279 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            +L  +  +W+TEA+P+ IT++ P  +FP+FGI S+  VA +Y  D   L++G   LA ++E +N+HKR+AL + ++     +NP  L LG   +TAF+SMW+ N + A ++MP+   + Q +
Sbjct:   40 ILFVIATFWITEALPLSITALLPGLMFPMFGIMSSTHVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALRMVMMV---GVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIVEAVAQQI 158          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: S13A1_HUMAN (Solute carrier family 13 member 1 OS=Homo sapiens GN=SLC13A1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.004e-20
Identity = 45/118 (38.14%), Postives = 76/118 (64.41%), Query Frame = 3
Query:  291 VFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            V  +WLTEA+P+ +T++ P  + P+FGI  +  VA +Y  D   L++G   LA ++E +N+HKR+AL + ++     +NP  L LG   +TAF+SMW+ N + A ++MP+A  ++Q +
Sbjct:   44 VATFWLTEALPLSVTALLPSLMLPMFGIMPSKKVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALKMVMMV---GVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIAEAVVQQI 158          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: INDY1_DROME (Protein I'm not dead yet OS=Drosophila melanogaster GN=Indy PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.311e-20
Identity = 52/145 (35.86%), Postives = 83/145 (57.24%), Query Frame = 3
Query:  213 LCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALN-ITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            L  ++C+ V L  +      + +L  +  +W+TEA+P+ +TSM P+  FP+ GI S+D     Y  D + + +G  ++ALAVE+ N+HKRLAL  I I+ C    +P  L  G+   T F+SMW+ N A   +M P+   +L+ L
Sbjct:   48 LVPLLCLPVMLLNEGAEFRCMYLLLVMAIFWVTEALPLYVTSMIPIVAFPIMGIMSSDQTCRLYFKDTLVMFMGGIMVALAVEYCNLHKRLALRVIQIVGC----SPRRLHFGLIMVTMFLSMWISNAACTAMMCPIIQAVLEEL 188          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: S13A1_MOUSE (Solute carrier family 13 member 1 OS=Mus musculus GN=Slc13a1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.712e-20
Identity = 45/122 (36.89%), Postives = 77/122 (63.11%), Query Frame = 3
Query:  279 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            +L  +  +W+TEA+P+ IT++ P  +FP+FGI  +  VA +Y  D   L++G   LA ++E +N+HKR+AL + ++     +NP  L LG   +TAF+SMW+ N + A ++MP+   + Q +
Sbjct:   40 ILFVIAIFWITEALPLSITALLPGLMFPMFGIMRSSQVASAYFKDFHLLLIGVICLATSIEKWNLHKRIALRMVMMV---GVNPAWLTLGFMSSTAFLSMWLSNTSTAAMVMPIVEAVAQQI 158          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: S13A3_MOUSE (Solute carrier family 13 member 3 OS=Mus musculus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.920e-20
Identity = 47/124 (37.90%), Postives = 78/124 (62.90%), Query Frame = 3
Query:  273 LGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            L V+  +  +W TEA+P+ +T++ P+ LFP  GI  +  V   Y  D   L L   I+A A+E +N+H+R+AL + +L     + P  L+LG+  TT+F+SMW+ N A+  +M+P+A+ IL++L
Sbjct:   42 LYVILLMAVYWCTEALPLSVTALLPIILFPFMGILPSSKVCPQYFLDTNFLFLSGLIMASAIEEWNLHRRIALKVLMLV---GVQPARLILGMMVTTSFLSMWLSNTASTAMMLPIASAILKSL 162          
The following BLAST results are available for this feature:
BLAST of CK937871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
SDCS_STAAM5.884e-2139.84Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAC5.884e-2139.84Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAAB5.884e-2139.84Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAA85.884e-2139.84Sodium-dependent dicarboxylate transporter sdcS OS... [more]
SDCS_STAA35.884e-2139.84Sodium-dependent dicarboxylate transporter sdcS OS... [more]
S13A1_RAT5.884e-2137.70Solute carrier family 13 member 1 OS=Rattus norveg... [more]
S13A1_HUMAN1.004e-2038.14Solute carrier family 13 member 1 OS=Homo sapiens ... [more]
INDY1_DROME1.311e-2035.86Protein I'm not dead yet OS=Drosophila melanogaste... [more]
S13A1_MOUSE1.712e-2036.89Solute carrier family 13 member 1 OS=Mus musculus ... [more]
S13A3_MOUSE2.920e-2037.90Solute carrier family 13 member 3 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004480_H03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937871 ID=CK937871; Name=CK937871; organism=Citrus sinensis; type=EST; length=645bp
GGGGACTTTCGAACCATCCTTCAATTTTCTCTCGTATCGTGTTACCCGTT
CACTGCAAAATGAACGGTGACCACGAAGCTCATCCAAATTCTGGTGACAT
CAAGGCGCCACTCCTACCTTCCCATCGTCAAATCCAACGGTCACCAAGCT
CCCACTTCACATTGAAAACCATTTTCACACCAAACAATTTCTACATCCTC
CTAGGACCTCTCCTGTGCGCTGTTATATGTGTATGTGTGAAGCTCGATGG
GCAGGCGACAAGCAGGAACATGTTGGGTGTTCTTGCTTGGGTCTTCGCTT
GGTGGCTCACGGAGGCCGTACCCATGCCCATTACCTCTATGGCGCCTCTG
TTTCTGTTTCCTCTGTTTGGTATCTCTTCTGCTGACACCGTTGCTCATTC
TTACATGGATGATGTTATTGCCCTCGTTCTTGGTAGCTTTATTCTTGCTC
TTGCCGTTGAGCACTACAACATTCACAAAAGATTGGCCTTAAATATAACT
ATTCTATTCTGTGGAGAGCCAATGAATCCGCCCTTGCTGCTTCTTGGGAT
ATGTGGCACGACAGCATTCGTGAGCATGTGGATGCATAACGTGGCAGCAG
CAGTGATCATGATGCCAGTGGCCACTGGGATCTTACAGAACTTGC
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