CK937871

Overview
NameCK937871
Unique NameCK937871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: S13A3_HUMAN (Solute carrier family 13 member 3 OS=Homo sapiens GN=SLC13A3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.920e-20
Identity = 48/124 (38.71%), Postives = 78/124 (62.90%), Query Frame = 3
Query:  273 LGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            L V+  +  +W TEA+P+ +T++ P+ LFP  GI  ++ V   Y  D   L L   I+A A+E +N+H+R+AL I +L     + P  L+LG+  TT+F+SMW+ N A+  +M+P+A  IL++L
Sbjct:   42 LFVILLMAVYWCTEALPLSVTALLPIVLFPFMGILPSNKVCPQYFLDTNFLFLSGLIMASAIEEWNLHRRIALKILMLV---GVQPARLILGMMVTTSFLSMWLSNTASTAMMLPIANAILKSL 162          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: S13A5_MOUSE (Solute carrier family 13 member 5 OS=Mus musculus GN=Slc13a5 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.981e-20
Identity = 49/122 (40.16%), Postives = 75/122 (61.48%), Query Frame = 3
Query:  279 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            V+  +  +W T+ +P+ +TS+ P+ LFPL  +  +  V   YM D   L LGS I+A+AVE + +HKR+AL + +LF G    P  L+LG    TAF+SMW+ N AA  +M+P+   +LQ +
Sbjct:   41 VIVIMAVYWCTDVIPVAVTSLLPVLLFPLLKVLDSKQVCIQYMKDTNMLFLGSLIVAVAVERWKLHKRVALRM-LLFVG--TKPSRLMLGFMFVTAFLSMWISNTAATAMMIPIVEAMLQQM 159          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: S13A3_RAT (Solute carrier family 13 member 3 OS=Rattus norvegicus GN=Slc13a3 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.497e-20
Identity = 47/124 (37.90%), Postives = 77/124 (62.10%), Query Frame = 3
Query:  273 LGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            L V+  +  +W TEA+P+ +T++ P+ LFP  GI  +  V   Y  D   L L   I+A A+E  N+H+R+AL + +L     + P  L+LG+  TT+F+SMW+ N A+  +M+P+A+ IL++L
Sbjct:   42 LYVILLMAVYWCTEALPLSVTALLPIILFPFMGILPSSKVCPQYFLDTNFLFLSGLIMASAIEERNLHRRIALKVLMLV---GVQPARLILGMMVTTSFLSMWLSNTASTAMMLPIASAILKSL 162          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: S13A5_RAT (Solute carrier family 13 member 5 OS=Rattus norvegicus GN=Slc13a5 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.217e-19
Identity = 48/122 (39.34%), Postives = 73/122 (59.84%), Query Frame = 3
Query:  279 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            V+  +  +W T+ +P+ ITS+ P+ LFPL  +  +  V   YM D   L LGS I+A AVE + +HKR+AL + +LF G    P  L+LG    TAF+SMW+ N A   +M+P+   +L+ +
Sbjct:   41 VIILMAIYWCTDVIPVAITSLLPVLLFPLLKVLDSKQVCVQYMTDTNMLFLGSLIVATAVERWELHKRIALRM-LLFVG--TKPSRLMLGFMFVTAFLSMWISNTATTAMMIPIVEAMLEQM 159          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: NAD1_CAEEL (Sodium-dependent low-affinity dicarboxylate transporter 1 OS=Caenorhabditis elegans GN=nac-1 PE=2 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 5.507e-19
Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = 3
Query:  192 YILLGPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            +++ G LL     +    D        L  +A + ++W+ EA+P+ IT+  P+ LFPLFGI  ++ VA +Y+ D   L +G  ++ALAVE   +H R+AL +      EP     ++ G  G T F+SMW+ N A   +M+P+   ++  L
Sbjct:   18 FVIWGALLIFSPLLMFVGDSHGLQAKCLYCVAVMGSYWVFEALPLAITAFIPMILFPLFGIMRSEEVARAYLPDTCFLFMGGLMVALAVEKCELHARVALFVLKTVGSEPAR---VMAGFMGVTGFLSMWISNTATTALMVPILQSVITEL 165          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: S13A2_RAT (Solute carrier family 13 member 2 OS=Rattus norvegicus GN=Slc13a2 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.772e-17
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 3
Query:  303 WLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            W TEA+P+ +T + P+ LF L GI  A      Y  D   L +G  ++A+AVEH+N+HKR+AL + ++     +   LLLLG    TAF+SMW+ N A   +M+P+   +L+ L
Sbjct:   49 WCTEALPLAVTVLFPIVLFLLMGIMDASE-GLEYFKDTNILFVGGLMVAIAVEHWNLHKRIALQVLLII---GVRAALLLLGFMLVTAFLSMWISNTATTAMMVPIGHAVLEQL 158          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: NAD3_CAEEL (Sodium-dependent high-affinity dicarboxylate transporter 3 OS=Caenorhabditis elegans GN=nac-3 PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17
Identity = 51/164 (31.10%), Postives = 84/164 (51.22%), Query Frame = 3
Query:  162 LKTIFTPNNFYILL---GPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            L  + TP  F  +L   GP      CVC+                 +  +W++E +P+ +T+M P+ LFPL G+  A+T A  YM+D   L +G  I+A AVE  ++H+R+AL++      E   P  ++LG    TA +S ++ N A   +M+P+   ++Q L
Sbjct:   55 LVLVLTPLFFGQMLNWEGPEWKCAYCVCI-----------------IAVYWMSEVMPLAVTAMLPVVLFPLVGVLDANTTAKEYMNDTNFLFIGGLIMAAAVEKCDLHERVALSVLRCVGSE---PKWIMLGFMTVTALLSSFISNTATTAMMVPIGQSVVQQL 198          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: S13A4_HUMAN (Solute carrier family 13 member 4 OS=Homo sapiens GN=SLC13A4 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 44/122 (36.07%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  279 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            VL     +W++EAVP+   ++ P FL+P FG+  ++ VA  Y  +   L++G   +A AVE +N+HKR+AL + +L  G    P +LLL     T  +SMW+ N +   ++MP+   +LQ L
Sbjct:   40 VLIVTAVYWVSEAVPLGAAALVPAFLYPFFGVLRSNEVAAEYFKNTTLLLVGVICVAAAVEKWNLHKRIALRM-VLMAG--AKPGMLLLCFMCCTTLLSMWLSNTSTTAMVMPIVEAVLQEL 158          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: INDY2_DROME (Protein I'm not dead yet 2 OS=Drosophila melanogaster GN=Indy-2 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.270e-15
Identity = 37/114 (32.46%), Postives = 63/114 (55.26%), Query Frame = 3
Query:  303 WLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            W+TE +P+ +T++ PL   PL G+ +A  V   Y  D I + LG  I+AL +E+ N+H R+AL +  +  G P     L +G+   + F+ +W+ N A   +M P+   ++  L
Sbjct:   60 WITETLPIYVTALFPLVFCPLLGLVNASIVCKQYFTDTIVVFLGGLIVALGIEYSNLHTRIALRVIRIVGGSPRR---LFVGLMSVSTFMGLWISNSAGTAMMCPIVKALVNEL 170          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: YKG6_CAEEL (Uncharacterized transporter B0285.6 OS=Caenorhabditis elegans GN=B0285.6 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.394e-14
Identity = 40/122 (32.79%), Postives = 66/122 (54.10%), Query Frame = 3
Query:  279 VLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            V+  +  +W+ E VP+ +TS  P+   P  GI S   VA  Y  D   +   S +L+LAVE   +HKR+AL + + + G    P  L+ G    T+F+S+W+ + A   +M P+A  +L+ +
Sbjct:   45 VILTMSCYWVAEVVPLAVTSFIPMIALPFLGIVSIKEVAPKYFADTNIVFFNSLMLSLAVEECQLHKRIALKM-LTYVG--TRPHWLMAGFMIITSFISLWISDTACCALMAPIAYALLEEI 163          
The following BLAST results are available for this feature:
BLAST of CK937871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
S13A3_HUMAN2.920e-2038.71Solute carrier family 13 member 3 OS=Homo sapiens ... [more]
S13A5_MOUSE4.981e-2040.16Solute carrier family 13 member 5 OS=Mus musculus ... [more]
S13A3_RAT8.497e-2037.90Solute carrier family 13 member 3 OS=Rattus norveg... [more]
S13A5_RAT4.217e-1939.34Solute carrier family 13 member 5 OS=Rattus norveg... [more]
NAD1_CAEEL5.507e-1932.45Sodium-dependent low-affinity dicarboxylate transp... [more]
S13A2_RAT1.772e-1739.47Solute carrier family 13 member 2 OS=Rattus norveg... [more]
NAD3_CAEEL3.022e-1731.10Sodium-dependent high-affinity dicarboxylate trans... [more]
S13A4_HUMAN3.947e-1736.07Solute carrier family 13 member 4 OS=Homo sapiens ... [more]
INDY2_DROME1.270e-1532.46Protein I'm not dead yet 2 OS=Drosophila melanogas... [more]
YKG6_CAEEL2.394e-1432.79Uncharacterized transporter B0285.6 OS=Caenorhabdi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004480_H03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937871 ID=CK937871; Name=CK937871; organism=Citrus sinensis; type=EST; length=645bp
GGGGACTTTCGAACCATCCTTCAATTTTCTCTCGTATCGTGTTACCCGTT
CACTGCAAAATGAACGGTGACCACGAAGCTCATCCAAATTCTGGTGACAT
CAAGGCGCCACTCCTACCTTCCCATCGTCAAATCCAACGGTCACCAAGCT
CCCACTTCACATTGAAAACCATTTTCACACCAAACAATTTCTACATCCTC
CTAGGACCTCTCCTGTGCGCTGTTATATGTGTATGTGTGAAGCTCGATGG
GCAGGCGACAAGCAGGAACATGTTGGGTGTTCTTGCTTGGGTCTTCGCTT
GGTGGCTCACGGAGGCCGTACCCATGCCCATTACCTCTATGGCGCCTCTG
TTTCTGTTTCCTCTGTTTGGTATCTCTTCTGCTGACACCGTTGCTCATTC
TTACATGGATGATGTTATTGCCCTCGTTCTTGGTAGCTTTATTCTTGCTC
TTGCCGTTGAGCACTACAACATTCACAAAAGATTGGCCTTAAATATAACT
ATTCTATTCTGTGGAGAGCCAATGAATCCGCCCTTGCTGCTTCTTGGGAT
ATGTGGCACGACAGCATTCGTGAGCATGTGGATGCATAACGTGGCAGCAG
CAGTGATCATGATGCCAGTGGCCACTGGGATCTTACAGAACTTGC
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