CK937871

Overview
NameCK937871
Unique NameCK937871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: NAD2_CAEEL (Sodium-dependent high-affinity dicarboxylate transporter 2 OS=Caenorhabditis elegans GN=nac-2 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.552e-13
Identity = 46/150 (30.67%), Postives = 78/150 (52.00%), Query Frame = 3
Query:  195 ILLGPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            +LLGPL      V V L         L  + ++  +W+ EA P+ +TS+ PL L+P+  I  +  ++  Y  D I L + + I+A+AVE   +H+R+AL    L        P++LLG    T+F+S ++ + A   +M P A  +L ++
Sbjct:   15 VLLGPL------VAVPLLFFGPEYRCLFSIIFLSTYWIGEAFPIGVTSLFPLALYPILQIVPSKQISPVYFKDSIVLFMCTLIMAMAVEATGLHRRIALK---LLTKVGAKQPVMLLGFMCITSFISFFVSDTACTALMCPTAVALLMSM 155          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: YBH4_SCHPO (Uncharacterized transporter C3B8.04c OS=Schizosaccharomyces pombe GN=SPBC3B8.04c PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.516e-12
Identity = 58/200 (29.00%), Postives = 87/200 (43.50%), Query Frame = 3
Query:  108 PLLPSHRQIQRSPSSHFTLKTIF----TPNNFYILLGPLLCAVICVCVKLDG-----QATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLF------------PLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            P+    ++ ++ P  +FT+KT F     P  F+      L  +I + + L            N L +L  V   W TEA+P+ +TS    F+             PL G  S   +  S  +  I L+LG F +A A+  Y+I KRLA   T +       P  +LL       F SMW+ NVAA V+   +   +L+NL
Sbjct:  373 PVAADEKESEQPP--YFTIKTKFGVFRIPRCFFNSTIATLITIIVIFILLLSFPVIDNREQNNCLALLVMVSLLWATEAIPLFVTSFLVPFMTVFLKILRDENGSPLSGKESTKVIFSSMWNPTIVLLLGGFTIAAALSKYHIAKRLA---TSILAHAGRKPRSVLLTNMFVAMFASMWISNVAAPVLCFSIIQPLLRNL 567          
BLAST of CK937871 vs. ExPASy Swiss-Prot
Match: Y608_HAEIN (Uncharacterized transporter HI0608 OS=Haemophilus influenzae GN=HI0608 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.236e-11
Identity = 50/154 (32.47%), Postives = 74/154 (48.05%), Query Frame = 3
Query:  183 NNFYILLGPLLCAVICVCVKLDGQATSRNMLGVLAWVFAWWLTEAVPMPITSMAPLFLFPLFGISSADTVAHSYMDDVIALVLGSFILALAVEHYNIHKRLALNITILFCGEPMNPPLLLLGICGTTAFVSMWMHNVAAAVIMMPVATGILQNL 644
            N    +L  +L  V+   +  + +A S   L +LA++   WL+EA+ + IT++    L    G+ S       + D  I L  G F LA A+    + K +A  I  L  G      + L  I   TAF+SMWM N A A +M+P+A GIL  L
Sbjct:   12 NGIIFILDIVLFFVLLNVLPFEPKANSG--LALLAFIAVLWLSEALHVTITALLVPLLAVALGLVSTKQALVGFADPTIFLFFGGFSLATALHIQKLDKLIANKIMALARGNLFIAVIYLFLI---TAFLSMWMSNTATAAMMLPLAMGILSQL 160          
The following BLAST results are available for this feature:
BLAST of CK937871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
NAD2_CAEEL1.552e-1330.67Sodium-dependent high-affinity dicarboxylate trans... [more]
YBH4_SCHPO8.516e-1229.00Uncharacterized transporter C3B8.04c OS=Schizosacc... [more]
Y608_HAEIN3.236e-1132.47Uncharacterized transporter HI0608 OS=Haemophilus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004480_H03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937871 ID=CK937871; Name=CK937871; organism=Citrus sinensis; type=EST; length=645bp
GGGGACTTTCGAACCATCCTTCAATTTTCTCTCGTATCGTGTTACCCGTT
CACTGCAAAATGAACGGTGACCACGAAGCTCATCCAAATTCTGGTGACAT
CAAGGCGCCACTCCTACCTTCCCATCGTCAAATCCAACGGTCACCAAGCT
CCCACTTCACATTGAAAACCATTTTCACACCAAACAATTTCTACATCCTC
CTAGGACCTCTCCTGTGCGCTGTTATATGTGTATGTGTGAAGCTCGATGG
GCAGGCGACAAGCAGGAACATGTTGGGTGTTCTTGCTTGGGTCTTCGCTT
GGTGGCTCACGGAGGCCGTACCCATGCCCATTACCTCTATGGCGCCTCTG
TTTCTGTTTCCTCTGTTTGGTATCTCTTCTGCTGACACCGTTGCTCATTC
TTACATGGATGATGTTATTGCCCTCGTTCTTGGTAGCTTTATTCTTGCTC
TTGCCGTTGAGCACTACAACATTCACAAAAGATTGGCCTTAAATATAACT
ATTCTATTCTGTGGAGAGCCAATGAATCCGCCCTTGCTGCTTCTTGGGAT
ATGTGGCACGACAGCATTCGTGAGCATGTGGATGCATAACGTGGCAGCAG
CAGTGATCATGATGCCAGTGGCCACTGGGATCTTACAGAACTTGC
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