CK937858

Overview
NameCK937858
Unique NameCK937858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.101e-17
Identity = 57/160 (35.62%), Postives = 86/160 (53.75%), Query Frame = 3
Query:  345 ILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI 821
            +L +A A    +F  V  +  +SGGH+NPAV+FG  +G ++S+IRA+ Y +AQ LG+I     ++       N        ++ G   G     E++ TF L+YTV+ +A DPKR A    V  +APL IG  V    L   P  G  +NPA +FG +++
Sbjct:   58 LLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVT----NNMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLV 209          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: AQPZ_SHIFL (Aquaporin Z OS=Shigella flexneri GN=aqpZ PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.584e-17
Identity = 56/172 (32.56%), Postives = 82/172 (47.67%), Query Frame = 3
Query:  336 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC-----------GFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 818
            G+G  G+A AFG  +  + +    ISGGH NPAVT GL+ G +      + Y++AQ +G I              GF  A      N YG        GY+  + L  E++ +   +  +  ATD    A        AP+ IG A+ ++HL +IP+T T +NPARS   A+
Sbjct:   33 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYG---EHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAI 195          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: AQPZ_ECOLI (Aquaporin Z OS=Escherichia coli (strain K12) GN=aqpZ PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.584e-17
Identity = 56/172 (32.56%), Postives = 82/172 (47.67%), Query Frame = 3
Query:  336 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC-----------GFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 818
            G+G  G+A AFG  +  + +    ISGGH NPAVT GL+ G +      + Y++AQ +G I              GF  A      N YG        GY+  + L  E++ +   +  +  ATD    A        AP+ IG A+ ++HL +IP+T T +NPARS   A+
Sbjct:   33 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYG---EHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAI 195          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: AQPZ_ECOL6 (Aquaporin Z OS=Escherichia coli O6 GN=aqpZ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.584e-17
Identity = 56/172 (32.56%), Postives = 82/172 (47.67%), Query Frame = 3
Query:  336 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC-----------GFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 818
            G+G  G+A AFG  +  + +    ISGGH NPAVT GL+ G +      + Y++AQ +G I              GF  A      N YG        GY+  + L  E++ +   +  +  ATD    A        AP+ IG A+ ++HL +IP+T T +NPARS   A+
Sbjct:   33 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYG---EHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAI 195          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: AQPZ_ECO57 (Aquaporin Z OS=Escherichia coli O157:H7 GN=aqpZ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.584e-17
Identity = 56/172 (32.56%), Postives = 82/172 (47.67%), Query Frame = 3
Query:  336 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGC-----------GFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 818
            G+G  G+A AFG  +  + +    ISGGH NPAVT GL+ G +      + Y++AQ +G I              GF  A      N YG        GY+  + L  E++ +   +  +  ATD    A        AP+ IG A+ ++HL +IP+T T +NPARS   A+
Sbjct:   33 GIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYG---EHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAI 195          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.114e-17
Identity = 67/205 (32.68%), Postives = 97/205 (47.32%), Query Frame = 3
Query:  222 RAVIAEFIAXXXXXXXXXXXXIG-YKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGAN----ELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI 821
            RA ++EF+A             G +K   D    T   GG+ ++ +A A    +   V  +   SGGH+NPAVTFG+ +GR++S  RA LY  AQ LGA+     ++           GG       L    ++   L  E++ TF LVYTV++    +RS        +APL IG       LA  P  G  +NPAR+FG A++
Sbjct:   29 RAALSEFVATAVFVFAAEGSVYGLWKMYRD----TGTLGGLLVVAVAHALA--LAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLLRL--------ASGGMRPMGFTLGHRIHERHALLLEVVMTFGLVYTVYATAVDRRSGGGD----IAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALV 215          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.043e-16
Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 3
Query:  324 DQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIG---TFVLVYTVFSATDPKRSARDSHVPV-LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY 824
            D  G  G+L  A A    +   VY +  +SGGH+NPAVTF + +  ++S+  A+ Y  +Q + ++  C  +K      +      A E+       TG GA ++     FVLVYTVF+A+DP+R      +P+ + P+ IGF      LA  P +G  +NPA +FG+A++Y
Sbjct:   53 DVSGPFGVLIPAIANALALSSSVYISWNVSGGHVNPAVTFAMAVAGRISVPTAMFYWTSQMIASVMACLVLKVTVMEQHVPIYKIAGEM-------TGFGASVLEGVLAFVLVYTVFTASDPRRG-----LPLAVGPIFIGFVAGANVLAAGPFSGGSMNPACAFGSAMVY 211          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.828e-16
Identity = 57/166 (34.34%), Postives = 82/166 (49.40%), Query Frame = 3
Query:  339 VGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGA------EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 818
            +G+  +A A   ++ ++V     +SGGHINPAVT GL  G  ++L R+ LY  AQ LG+   C  + A           G  E    +    G+GA      E + TF L++ V++    +R A    V  L PL +G  V    LA  P +G  +NPARSFG A+
Sbjct:   53 MGLTAVAAAHALVVAVMVSAGLHVSGGHINPAVTLGLAAGGHITLFRSALYAAAQLLGSSLACLLLAALT---------GGEEAVPVHAPAPGVGAARAVAMEAVLTFSLLFAVYATVVDRRRA----VGALGPLLVGLVVGANILAGGPYSGASMNPARSFGPAL 205          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.506e-15
Identity = 66/219 (30.14%), Postives = 96/219 (43.84%), Query Frame = 3
Query:  183 LIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYT--VFSATDPKR----SARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI 821
            L+D +        R+ +AEFI+            I  +  T P++ T   G +    +A AFG  +F  V   A +SGGH+NPAVTF   +G ++ +  A+ Y  +Q LGA   C  +  F              +A       G   E + TF+LVYT  V    +P+       R+     L  L +G       LA   +TG  +NPARSFG AV+
Sbjct:    7 LVDLKRCFSAPSLRSYLAEFISTFLFVFTAVGSAISARMLTTPDV-TSSAGPLVATAVAQAFG--LFAAVLIAADVSGGHVNPAVTFAYAIGGRIGVPSAMFYWASQLLGATFACLSLNLFSAG----EEVPTTRIAVAMTGFGGAVLEGVLTFLLVYTVHVVGEREPRSRGGDGKREFAATALGALAVGLTQGAFVLAAGALTGASMNPARSFGPAVV 218          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.967e-15
Identity = 57/162 (35.19%), Postives = 87/162 (53.70%), Query Frame = 3
Query:  339 VGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI 821
            VG+  +A A   ++ ++V     +SGGHINPAVT GL    +++L R+ LY+ AQ LG+   C  + AF     +  G   + L  G     G+  E + TF L++ V+ +  DP+R+     V  + PL +G  V    LA  P +G  +NPARSFG A++
Sbjct:   54 VGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFRSALYVAAQLLGSTLAC-LLLAFLAVADS--GVPVHALGAGVGALRGVLMEAVLTFSLLFAVYATVVDPRRA-----VGGMGPLLVGLVVGANVLAGGPFSGASMNPARSFGPALV 207          
The following BLAST results are available for this feature:
BLAST of CK937858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
TIPA_PHAVU2.101e-1735.63Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
AQPZ_SHIFL3.584e-1732.56Aquaporin Z OS=Shigella flexneri GN=aqpZ PE=3 SV=2[more]
AQPZ_ECOLI3.584e-1732.56Aquaporin Z OS=Escherichia coli (strain K12) GN=aq... [more]
AQPZ_ECOL63.584e-1732.56Aquaporin Z OS=Escherichia coli O6 GN=aqpZ PE=3 SV... [more]
AQPZ_ECO573.584e-1732.56Aquaporin Z OS=Escherichia coli O157:H7 GN=aqpZ PE... [more]
TIP32_ORYSJ6.114e-1732.68Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP51_ARATH1.043e-1633.92Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
TIP43_ORYSJ8.828e-1634.34Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
TIP51_MAIZE1.506e-1530.14Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
TIP44_MAIZE1.967e-1535.19Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004481_B05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937858 ID=CK937858; Name=CK937858; organism=Citrus sinensis; type=EST; length=828bp
GGGGACCCATCATTAAACTCTGTAGCAAACACAACAGTCGTAGCTCTTGT
TTCTCCCTCTCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAAATGGG
GAAGGATGTTGAAGTTGCTGAGCAGCAAGGCGGCGGCGGCGAGTTCTCAG
CCAAGGACTACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCGAGGAG
CTGGGCAAGTGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATCGCTAC
GCTTTTGTTTCTTTATGTTACCGTCTTGACTGTGATTGGATACAAGAGCC
AGACTGATCCCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCATTCTT
GGCATCGCTTGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTACTGCAC
AGCCGGTATTTCTGGTGGACATATCAACCCGGCTGTGACATTCGGACTGT
TCTTGGGGCGCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGGTAGCA
CAGTGCTTGGGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTCCAAAA
ATCATACTACAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGATGGAT
ACAACAAGGGCACCGGACTGGGTGCTGAGATCATCGGTACTTTCGTTCTT
GTCTACACTGTTTTCTCTGCCACTGATCCTAAGAGGAGCGCAAGAGACTC
CCATGTTCCGGTCTTGGCACCACTCCCCATTGGGTTTGCTGTGTTCATGG
TTCACTTGGCCACCATCCCCATCACCGGAACCGGCATCAACCCAGCTAGG
AGTTTTGGAGCTGCTGTGATCTACAACA
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