CK937858

Overview
NameCK937858
Unique NameCK937858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: AQPM_METTH (Aquaporin aqpM OS=Methanobacterium thermoautotrophicum GN=aqpM PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.010e-11
Identity = 55/166 (33.13%), Postives = 79/166 (47.59%), Query Frame = 3
Query:  336 GVGILG-------IAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLG-AICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFG 809
            G+G+LG       I  AFG  I   +Y    ISG HINPAVT GL+  +K      + Y++AQ LG A     F++    +     G GA     G      + AE +GTF+L+ T+      +R+ +       A + IG  V  +      ITG+ +NPAR+FG
Sbjct:   45 GIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGRDVVPYIIAQLLGAAFASFIFLQCAGITAATIGGLGATAPFPGIGYWQAMLAETVGTFLLMITIMGIAVDERAPKG-----FAGIIIGLTVAGIITTIGNITGSSLNPARTFG 205          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.319e-11
Identity = 55/162 (33.95%), Postives = 77/162 (47.53%), Query Frame = 3
Query:  345 ILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGA---NELADGYNKGTGLGAEIIGTFVLVYTVFSA-TDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 818
            + G+A A      +LV     +SGGH+NPAVT  L     ++  R+ LY+ AQ L +   C  ++          GG A   + L  G     GL  EII TF L++ V++   DP+     S VP   PL  G  V    +A    +G  +NPARSFG A+
Sbjct:   58 LAGVAIATALAAGVLVTAGFHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLASSLACILLRYLT-------GGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYATILDPR-----SSVPGFGPLLTGLIVGANTIAGGNFSGASMNPARSFGPAL 207          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.723e-11
Identity = 52/161 (32.30%), Postives = 71/161 (44.10%), Query Frame = 3
Query:  345 ILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN 827
            +L  A A G  +  L  C   ISG HINPAVT  L + R +S IRA +Y+ AQC G I G   +       Y      A   +         G E I TF++V   F +TDP +    +     +   IG A       ++P     +NPARS G + + N
Sbjct:   99 LLATALASGLAMATLTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALLYGVTVPGYQGNLQAAISHSAALAAWERFGVEFILTFLVVLCYFVSTDPMKKFMGN-----SAASIGCAYSACCFVSMPY----LNPARSLGPSFVLN 250          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: AQPM_ARCFU (Probable aquaporin aqpM OS=Archaeoglobus fulgidus GN=aqpM PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.723e-11
Identity = 60/173 (34.68%), Postives = 78/173 (45.09%), Query Frame = 3
Query:  312 NLNTDQCGGVGI-LGIAWAFGGMIFILVYCTAGISGGHINPAVT-----FGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFG 809
            N+     GG+G    I  AF   I  ++Y    ISG HINPAVT      G F GR+V     + Y+VAQ +GA  G     A         GG GA     G   G  +  E IGTF+L+  +      +R+      P  A L IG  V  +      ITG+ +NPAR+FG
Sbjct:   44 NIGIGALGGLGDWFAIGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREV-----VPYIVAQFIGAALGSLLFLACVGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAP-----PGFAGLVIGLTVGGIITTIGNITGSSLNPARTFG 206          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: GLPF_PSEAE (Glycerol uptake facilitator protein OS=Pseudomonas aeruginosa GN=glpF PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 50/175 (28.57%), Postives = 76/175 (43.43%), Query Frame = 3
Query:  336 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYY-------NRYGGGANELA----------DGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFG 809
            G+  + I W  G  + + +Y +AG+SG H+NPAV+  L+L       +   Y+ AQ  GA C    V     S +       N   G  + LA             + G     E++ T +L+  + + TD            LAPL IG  + ++  A  P+TG  +NPAR FG
Sbjct:   43 GLWEISIIWGVG--VSMAIYLSAGVSGAHLNPAVSIALWLFAGFEGRKLPFYITAQVAGAFCAAALVYTLYSSLFIEFEQAQNIVRGSQDSLALASVFSTYPHPALSVGQAFLVEVVITAILMAVIMALTDDGNGLPRG---PLAPLLIGLLIAVIGSAMGPLTGFAMNPARDFG 212          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: GLPF_HAEIN (Glycerol uptake facilitator protein OS=Haemophilus influenzae GN=glpF PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 55/180 (30.56%), Postives = 81/180 (45.00%), Query Frame = 3
Query:  336 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVT-----FGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGAN---------ELADGYNK--------GTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFG 809
            G+  + I W  G  + + VY TAG+SG H+NPAVT     F  F G+KV     + Y+++Q LGA      V A  ++ +  Y    N          LA  ++         G     E + T +L+  + + TD            LAPL IG  + ++  A  P+TG  +NPAR FG
Sbjct:   38 GLWEISIMWGMG--VALAVYATAGLSGAHLNPAVTIALWKFACFDGKKV-----IPYIISQMLGAFFAAALVYALYRNVFIDYETVHNIVRGTQESLSLAGTFSTYPHPSLSIGGAFAVEFVITAILMALIMALTDDGNGVPRG---PLAPLLIGILIAVIGGAMGPLTGFAMNPARDFG 207          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: NIP11_ARATH (Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.547e-11
Identity = 58/227 (25.55%), Postives = 93/227 (40.97%), Query Frame = 3
Query:  153 KDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGA---EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY 824
            +D H+P P    D        F + +IAEF+             +         +N      V + GIA  +G  I +L+Y    ISG HINPAVT       +  L +   Y+++Q +G+      ++      ++   G  +        G+ L A   E I TF L++ +       R+     +  LA L IG  V +  L   P++   +NP RS G A++Y
Sbjct:   32 EDIHNPRPLKKQDSLLSVSVPFLQKLIAEFLGTYFLVFTGCASVV---------VNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFTMEFIVTFYLMFIISGVATDNRA-----IGELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPALVY 244          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: AQP3_RAT (Aquaporin-3 OS=Rattus norvegicus GN=Aqp3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.551e-11
Identity = 54/179 (30.17%), Postives = 73/179 (40.78%), Query Frame = 3
Query:  342 GILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGT----------------GLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPI-------TGTGINPARSFG 809
            G L I  AFG  + + +     +SG H+NPAVTF +    +   I+  +Y +AQ LGA  G G V  F   Y   +    NEL      GT                G   + IGT  L+  V +  DP  +          P+P G   F V L  + I       +G  +NPAR FG
Sbjct:   55 GFLTINLAFGFAVTLAILVAGQVSGAHLNPAVTFAMCFLAREPWIKLPIYTLAQTLGAFLGAGIV--FGLYYDAIWAFAGNELVVSGPNGTAGIFATYPSGHLDMVNGFFDQFIGTAALIVCVLAIVDPYNN----------PVPRGLEAFTVGLVVLVIGTSMGFNSGYAVNPARDFG 221          
The following BLAST results are available for this feature:
BLAST of CK937858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
AQPM_METTH1.010e-1133.13Aquaporin aqpM OS=Methanobacterium thermoautotroph... [more]
TIP41_ORYSJ1.319e-1133.95Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
BIB_DROME1.723e-1132.30Neurogenic protein big brain OS=Drosophila melanog... [more]
AQPM_ARCFU1.723e-1134.68Probable aquaporin aqpM OS=Archaeoglobus fulgidus ... [more]
GLPF_PSEAE3.838e-1128.57Glycerol uptake facilitator protein OS=Pseudomonas... [more]
GLPF_HAEIN3.838e-1130.56Glycerol uptake facilitator protein OS=Haemophilus... [more]
NIP11_ARATH6.547e-1125.55Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1... [more]
AQP3_RAT8.551e-1130.17Aquaporin-3 OS=Rattus norvegicus GN=Aqp3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004481_B05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937858 ID=CK937858; Name=CK937858; organism=Citrus sinensis; type=EST; length=828bp
GGGGACCCATCATTAAACTCTGTAGCAAACACAACAGTCGTAGCTCTTGT
TTCTCCCTCTCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAAATGGG
GAAGGATGTTGAAGTTGCTGAGCAGCAAGGCGGCGGCGGCGAGTTCTCAG
CCAAGGACTACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCGAGGAG
CTGGGCAAGTGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATCGCTAC
GCTTTTGTTTCTTTATGTTACCGTCTTGACTGTGATTGGATACAAGAGCC
AGACTGATCCCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCATTCTT
GGCATCGCTTGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTACTGCAC
AGCCGGTATTTCTGGTGGACATATCAACCCGGCTGTGACATTCGGACTGT
TCTTGGGGCGCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGGTAGCA
CAGTGCTTGGGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTCCAAAA
ATCATACTACAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGATGGAT
ACAACAAGGGCACCGGACTGGGTGCTGAGATCATCGGTACTTTCGTTCTT
GTCTACACTGTTTTCTCTGCCACTGATCCTAAGAGGAGCGCAAGAGACTC
CCATGTTCCGGTCTTGGCACCACTCCCCATTGGGTTTGCTGTGTTCATGG
TTCACTTGGCCACCATCCCCATCACCGGAACCGGCATCAACCCAGCTAGG
AGTTTTGGAGCTGCTGTGATCTACAACA
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