CK937858

Overview
NameCK937858
Unique NameCK937858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUA2 (Aquaporin Z OS=Brucella abortus (strain 2308) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.133e-21
Identity = 64/167 (38.32%), Postives = 89/167 (53.29%), Query Frame = 3
Query:  336 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCG--FVKAFQKSYYNRYG---GGANELA-DGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 818
            G+G LG+A AFG  +  + Y   GISGGH NPAV+ GL +  ++     + Y VAQ LGAI      +V A  K  ++  G    G  EL+  GY+   GL  EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NPARS G A+
Sbjct:   33 GIGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPARSTGVAL 193          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.091e-21
Identity = 69/201 (34.33%), Postives = 98/201 (48.76%), Query Frame = 3
Query:  222 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI 821
            RA  AEF +            + Y   T     T      G++  + +    +F+ V   A +SGGH+NPAVTFG F+G  ++L+RA+LY +AQ LGA+  C  +K             A  L+ G      +  EI+ TF LVYTV+ +A DPK+      + ++APL IG  V    L      G  +NPA SFG AV+
Sbjct:   21 RAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATP----AGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVSTGGMET----AAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKK----GDIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVV 209          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.343e-21
Identity = 57/158 (36.08%), Postives = 84/158 (53.16%), Query Frame = 3
Query:  354 IAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN 827
            IA+ FG  +  L      ISG HINPAVT G  +  ++S+I+++LY+  QC+GAI G   +K       +    G +  +     G  +  E + TF+LV  V   +DP R    + +   APL +G ++   HL  I +TG  +NPARSFG AV+ N
Sbjct:   57 IAFTFGLTVATLAQAIGHISGCHINPAVTVGFLIVGEMSIIKSVLYIAVQCVGAIAGAAVIKVGVSEAVSGLDLGVSSFSSTLTVGQAVLIEALITFILVVVVKGVSDPGR----TDIKGSAPLAVGLSIAAGHLCAIKLTGASMNPARSFGPAVVQN 210          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: AQPZ_SYNY3 (Aquaporin Z OS=Synechocystis sp. (strain PCC 6803) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.343e-21
Identity = 64/170 (37.65%), Postives = 87/170 (51.18%), Query Frame = 3
Query:  336 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELA---------DGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 818
            G+G LG+A AFG  +F   Y    ISGGH NPAV+FGL++G++    +   Y+ AQ LGAI    F+    +   N    G+N LA          GY     L  E + TF+ +  +   TD    A        AP  IG A+ ++HL +IPIT T +NPARS G A+
Sbjct:   40 GLGYLGVALAFGLTVFTGAYALGHISGGHFNPAVSFGLWMGKRFPGSQLAPYIGAQVLGAIVASLFIFIVAQGGPNFSLDGSNPLATNGFGDHSPQGYGFLAALLIEFVLTFIFLIVILGVTDKTAPAG------FAPAAIGLALTLIHLISIPITNTSVNPARSTGVAL 203          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUME (Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.343e-21
Identity = 64/167 (38.32%), Postives = 89/167 (53.29%), Query Frame = 3
Query:  336 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCG--FVKAFQKSYYNRYG---GGANELA-DGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 818
            G+G LG+A AFG  +  + Y   GISGGH NPAV+ GL +  ++     + Y VAQ LGAI      +V A  K  ++  G    G  EL+  GY+   GL  EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NPARS G A+
Sbjct:   33 GIGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTWVNPARSTGVAL 193          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.979e-21
Identity = 71/208 (34.13%), Postives = 101/208 (48.56%), Query Frame = 3
Query:  198 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI 821
            EL   SF+RA+ AEF A            +G   +  P       G + +L +A AFG  +  LV     ISG H+NPAVTF   +G ++SL+RA  Y+ AQ LGA+ G   + +       R     N L  G + G     EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARSF  A++
Sbjct:    1 ELRSASFWRAIFAEFFATLFYVFFG----LGSSLRWAP-------GPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAV-RGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL 192          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.979e-21
Identity = 71/208 (34.13%), Postives = 101/208 (48.56%), Query Frame = 3
Query:  198 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI 821
            EL   SF+RA+ AEF A            +G   +  P       G + +L +A AFG  +  LV     ISG H+NPAVTF   +G ++SL+RA  Y+ AQ LGA+ G   + +       R     N L  G + G     EI  T   V  +F+  D +R+ R   V     L +GF++ + HL  +  TG G+NPARSF  A++
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-------GPLHVLQVALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAV-RGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL 194          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: AQPZ2_RHIME (Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.979e-21
Identity = 58/167 (34.73%), Postives = 90/167 (53.89%), Query Frame = 3
Query:  336 GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCG--FVKAFQKSYYNRYGGGANELAD----GYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAV 818
            G+G+LG+++AFG  +  + Y   GISGGH NPAV+ GL +  +V     + Y++AQ  GAI      +V A  K+ +      AN   +    GY+    L  E++ TF  +  +  +T  +  A        AP+ IG A+ ++HL +IP+T T +NPARS G A+
Sbjct:   33 GIGLLGVSFAFGLTVLTMAYTVGGISGGHFNPAVSLGLAVAGRVPAASLVSYVIAQVAGAIIAAAVLYVIATGKADFQLGSFAANGYGEHSPGGYSLTAALVTEVVMTFFFLIIILGSTHRRVPAG------FAPIAIGLALTLIHLVSIPVTNTSVNPARSTGQAL 193          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: MIP_RANPI (Lens fiber major intrinsic protein OS=Rana pipiens PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.190e-20
Identity = 69/208 (33.17%), Postives = 98/208 (47.12%), Query Frame = 3
Query:  198 ELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI 821
            E   +SF+RAV AEF              + + +           G   +L IA AFG ++  +V     +SG HINPAVTF   +G ++SL RA+ Y+ AQ LGA+ G   +     +   R     N L  G + G     EI  T   V  +F+  D +R+ R   V     L IGF++ + HL  +  TG  +NPARSF  AV+
Sbjct:    3 EFRSFSFWRAVFAEFFGTMFYVFFGLGASLKWAA-----------GPANVLVIALAFGLVLATMVQSIGHVSGAHINPAVTFAFLIGSQMSLFRAIFYIAAQLLGAVAGAAVLYGVTPAAI-RGNLALNTLHPGVSLGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----SLAIGFSLTLGHLFGLYYTGASMNPARSFAPAVL 194          
BLAST of CK937858 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.652e-20
Identity = 72/201 (35.82%), Postives = 99/201 (49.25%), Query Frame = 3
Query:  222 RAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSAT-DPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVI 821
            RA I+EFIA            +         +  D     G++ +A A    + + V     ISGGH+NPAVTFG  +G +VSL+RA+LY VAQ LGA+     ++        R  G A  LA G      +  E + TF L+Y  ++   DPKR     HV  +APL +GF +    LA  P  G G+NPAR FG A++
Sbjct:   26 RAAISEFIATAIFVFAAEGSVLSLGK-----MYHDMSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLATGGM--RPPGFA--LASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALV 213          
The following BLAST results are available for this feature:
BLAST of CK937858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
AQPZ_BRUA23.133e-2138.32Aquaporin Z OS=Brucella abortus (strain 2308) GN=a... [more]
TIP13_ARATH4.091e-2134.33Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
AQP_HAEIX5.343e-2136.08Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
AQPZ_SYNY35.343e-2137.65Aquaporin Z OS=Synechocystis sp. (strain PCC 6803)... [more]
AQPZ_BRUME5.343e-2138.32Aquaporin Z OS=Brucella melitensis GN=aqpZ PE=3 SV... [more]
MIP_RAT6.979e-2134.13Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE6.979e-2134.13Lens fiber major intrinsic protein OS=Mus musculus... [more]
AQPZ2_RHIME6.979e-2134.73Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 ... [more]
MIP_RANPI1.190e-2033.17Lens fiber major intrinsic protein OS=Rana pipiens... [more]
TIP31_MAIZE2.652e-2035.82Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004481_B05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937858 ID=CK937858; Name=CK937858; organism=Citrus sinensis; type=EST; length=828bp
GGGGACCCATCATTAAACTCTGTAGCAAACACAACAGTCGTAGCTCTTGT
TTCTCCCTCTCGTTTAATTAACAAAACAAAAATAAAAGGGAAAAAATGGG
GAAGGATGTTGAAGTTGCTGAGCAGCAAGGCGGCGGCGGCGAGTTCTCAG
CCAAGGACTACCACGACCCCCCTCCGGCGCCGCTGATCGATTTCGAGGAG
CTGGGCAAGTGGTCTTTTTACAGAGCTGTAATTGCTGAGTTCATCGCTAC
GCTTTTGTTTCTTTATGTTACCGTCTTGACTGTGATTGGATACAAGAGCC
AGACTGATCCCAACTTGAATACCGATCAGTGTGGTGGCGTTGGCATTCTT
GGCATCGCTTGGGCCTTTGGTGGCATGATCTTCATTCTCGTTTACTGCAC
AGCCGGTATTTCTGGTGGACATATCAACCCGGCTGTGACATTCGGACTGT
TCTTGGGGCGCAAGGTGTCGCTCATCCGAGCTCTTTTGTACATGGTAGCA
CAGTGCTTGGGTGCAATCTGTGGTTGTGGGTTTGTGAAGGCTTTCCAAAA
ATCATACTACAACAGGTATGGAGGTGGGGCCAATGAGCTAGCTGATGGAT
ACAACAAGGGCACCGGACTGGGTGCTGAGATCATCGGTACTTTCGTTCTT
GTCTACACTGTTTTCTCTGCCACTGATCCTAAGAGGAGCGCAAGAGACTC
CCATGTTCCGGTCTTGGCACCACTCCCCATTGGGTTTGCTGTGTTCATGG
TTCACTTGGCCACCATCCCCATCACCGGAACCGGCATCAACCCAGCTAGG
AGTTTTGGAGCTGCTGTGATCTACAACA
back to top