CK937854

Overview
NameCK937854
Unique NameCK937854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937854 vs. ExPASy Swiss-Prot
Match: RL18_METM7 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.562e-17
Identity = 68/221 (30.77%), Postives = 108/221 (48.87%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGL 765
            +F+V ++RRREGKTD+R R+ L+   K        R V R +  ++IAQ+++ +  GD VL +A++ EL + G +    +  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH D+  A    D ++L+         G HV  Y  +L ED  + Y+  F++Y++KG++ + L
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLN---------GTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDL 179          
BLAST of CK937854 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.562e-17
Identity = 68/221 (30.77%), Postives = 108/221 (48.87%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGL 765
            +F+V ++RRREGKTD+R R+ L+   K        R V R +  ++IAQ+++ +  GD VL +A++ EL + G +    +  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH D+  A    D ++L+         G HV  Y  +L ED  + Y+  F++Y++KG++ + L
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIA----DEERLN---------GTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDL 179          
BLAST of CK937854 vs. ExPASy Swiss-Prot
Match: RL18_KORCO (50S ribosomal protein L18P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.652e-17
Identity = 68/234 (29.06%), Postives = 103/234 (44.02%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAIRA 804
            R++VK++RRREGKTDY  R+ L+   K        R VVR TN+ II Q +     GD V+A A++ EL +YG   G  +  AAY TG L A R  K         G  E                  A+LD+G   +T G+R++            +PHS +      +             I G H+A++   L  +E    +  F++Y+++G D   +   ++ V   I A
Sbjct:    6 RYKVKFRRRREGKTDYMKRLALLKSRKP-------RVVVRRTNRYIIVQFIGFKGEGDEVIAYAFSKELEKYGWPYGGKNLPAAYLTGYLAAMRAKK--------AGVTE------------------AILDIGRFPSTKGSRLYAALKGVLDAGIDVPHSPEILPDEDR-------------IRGEHIASFAEKL--EEEGSLERQFSDYLRRGADPKIISEAFESVLERISA 191          
BLAST of CK937854 vs. ExPASy Swiss-Prot
Match: RL18_SULTO (50S ribosomal protein L18P OS=Sulfolobus tokodaii GN=rpl18p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.935e-17
Identity = 71/239 (29.71%), Postives = 109/239 (45.61%), Query Frame = 1
Query:   91 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAIRA 804
            A+   ++VKY+RRREGKT+Y  R   +  +         R VVR TNK IIAQI   N  GD ++ AA++ EL  ++G +  L +  AAY TG LL  R LK         G  E                  A+ D+GL     G+R+F            IP  D    G  +D            I G H+A+Y   L  + PE ++  F++Y+++G+    L + ++++   I++
Sbjct:    2 AHGPNYRVKYRRRREGKTNYYKRYTYVINNTT-------RLVVRLTNKYIIAQIAKFNPKGDVIVVAAHSMELAKKFGWKGDLNNTPAAYLTGYLLGVRALK--------AGIKE------------------AVADIGLFVPVKGSRIFTAIKGAIDAGLSIPVGD---LGIKED-----------RIKGVHIASYAQKLEAENPELFKRLFSKYLERGLHPKDLPSHFEEILNKIKS 193          
BLAST of CK937854 vs. ExPASy Swiss-Prot
Match: RL18_ARCFU (50S ribosomal protein L18P OS=Archaeoglobus fulgidus GN=rpl18p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.935e-17
Identity = 72/223 (32.29%), Postives = 102/223 (45.74%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEA 771
            R++V  +RRREGKT+YR R++L+   K        R VVR TN+ +IAQIV     GD V+    +  L  +G +  L +  AAY TG+L+A++ L+            +  GE              A+LD+GL   T G+RVF            +PHSD+     S+             I G H+AAY     E  PE+    F EY K+G+    L A
Sbjct:    8 RYKVPLRRRREGKTNYRKRLKLLLSRKP-------RLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFGWKGDLNNTPAAYLTGILIAKKALQ------------KGIGE--------------AVLDIGLHTPTRGSRVFAVLRGAVEGGLEVPHSDEVLPDDSR-------------IRGEHIAAY----YEMNPER----FGEYEKRGLKPSDLPA 176          
BLAST of CK937854 vs. ExPASy Swiss-Prot
Match: RL18_METM5 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.036e-16
Identity = 68/221 (30.77%), Postives = 105/221 (47.51%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGL 765
            +F+V ++RRREGKTD+R R+ L+   K        R V R +  ++ AQ++S +  GD VL +A+  EL + G +    +  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH D           ++ AE  R  + G HV  Y  +L ED  + Y+  F++Y++KG++ + L
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMSYDEKGDVVLVSAHTKELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGD-----------EIIAEEER--LNGTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDL 179          
BLAST of CK937854 vs. ExPASy Swiss-Prot
Match: RL18_NANEQ (50S ribosomal protein L18P OS=Nanoarchaeum equitans GN=rpl18p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.353e-16
Identity = 67/236 (28.39%), Postives = 106/236 (44.92%), Query Frame = 1
Query:   91 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798
            A+  R++V ++RRREGKT YR R++L+   K        R VVR  N +I+AQ+V  +  GD V+   +++ L +YG +    +  +AY  GL+     LK                          R    A+LD+G  K+T GN ++            IPHS+       +             I G H+A Y   L E+E E Y+  F+ Y+K+G+D + L   +++V   I
Sbjct:    2 AHGPRYRVPFRRRREGKTVYRKRLKLLLSGKP-------RLVVRRFNSNILAQLVEYDPKGDRVIFTIHSNVLKKYGWKGHRGNLPSAYLVGLIAGYEALK--------------------------RGYKEAVLDIGRYKSTKGNALYAVLKGALDAGLNIPHSETILPSEDR-------------IRGEHIANYAKMLKENE-ELYKKQFSRYLKEGLDPEQLPNHFEEVKQKI 190          
BLAST of CK937854 vs. ExPASy Swiss-Prot
Match: RL18_METHJ (50S ribosomal protein L18P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.768e-16
Identity = 59/163 (36.20%), Postives = 83/163 (50.92%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDK 591
            R+ V ++RRREG+T+Y AR RL+   K        R VVR TN+ II QI++A++ GD    AA + EL ++G E  L +  AAY TG+LLA R LK               G++             A+LD+GL + T G RVF            IPH+++
Sbjct:    6 RYFVAFRRRREGRTNYHARTRLVVATKP-------RMVVRKTNRHIICQIITAHMEGDRTHVAANSSELRKFGYEGSLNNTPAAYLTGMLLAVRALK--------------AGQE------------GAILDIGLHRATPGARVFAALKGAVEAGFDIPHNEE 135          
BLAST of CK937854 vs. ExPASy Swiss-Prot
Match: RL18_METS3 (50S ribosomal protein L18P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.015e-16
Identity = 65/215 (30.23%), Postives = 99/215 (46.05%), Query Frame = 1
Query:  106 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGI 750
            ++V ++RRREGKTDY AR++L++ DK+       R VVR +N     Q++     GD  LA+A + +L  YG   G ++ +A Y TG L A+R L              A G D             A+LD+GL     G++VF            IP+ +      S+             I G HVA Y  +L +DE  K    F++Y+++G+
Sbjct:    7 YKVPFRRRREGKTDYAARMKLVDYDKS-------RLVVRLSNAHATVQVIDYAPEGDITLASAVSKQLANYGYLGGASNTSAVYLTGYLCAKRAL--------------AKGVD------------SAILDIGLKSAIKGSKVFAALKGAVDAGLDIPYGEAVLPDESR-------------INGEHVANYAESLDDDEIAKL---FSKYLERGL 172          
BLAST of CK937854 vs. ExPASy Swiss-Prot
Match: RL18_METMP (50S ribosomal protein L18P OS=Methanococcus maripaludis GN=rpl18p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.015e-16
Identity = 67/221 (30.32%), Postives = 105/221 (47.51%), Query Frame = 1
Query:  103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGL 765
            +F+V ++RRREGKTD+R R+ L+   K        R V R +  ++ AQ+++ +  GD VL +A++ EL + G +    +  AAY TGLLL  + +K                ED             A+LD GL + T G  +F            IPH DK  A    D ++L+         G HV  Y  +L ED  + Y+  F++Y++KG++ + L
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMAYDEKGDVVLVSAHSKELVKMGYKGHCGNLPAAYLTGLLLGAKAVK----------------EDVK----------EAVLDKGLHRATKGAAIFAVLKGALDAGMDIPHGDKIIA----DEERLN---------GTHVKNYAESLKED-ADAYKKQFSKYLEKGLNPEDL 179          
The following BLAST results are available for this feature:
BLAST of CK937854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
RL18_METM73.562e-1730.7750S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METM63.562e-1730.7750S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_KORCO4.652e-1729.0650S ribosomal protein L18P OS=Korarchaeum cryptofi... [more]
RL18_SULTO7.935e-1729.7150S ribosomal protein L18P OS=Sulfolobus tokodaii ... [more]
RL18_ARCFU7.935e-1732.2950S ribosomal protein L18P OS=Archaeoglobus fulgid... [more]
RL18_METM51.036e-1630.7750S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_NANEQ1.353e-1628.3950S ribosomal protein L18P OS=Nanoarchaeum equitan... [more]
RL18_METHJ1.768e-1636.2050S ribosomal protein L18P OS=Methanospirillum hun... [more]
RL18_METS33.015e-1630.2350S ribosomal protein L18P OS=Methanobrevibacter s... [more]
RL18_METMP3.015e-1630.3250S ribosomal protein L18P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004481_B01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937854 ID=CK937854; Name=CK937854; organism=Citrus sinensis; type=EST; length=824bp
GGGGTCCTTAGCCGTCTCTCCTTCCCTCTCCTTTTCACTTACAACTCGAA
AGTTCGAGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCA
AGCGGTTCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTAC
AGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTACAACACACC
CAAGTACCGATTTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGA
TAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCC
CATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAGCTATGCTGC
AGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTG
AAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACTGGAGAGGATTAC
TCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCTCCTTGATGT
TGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTGCTCTGAAGG
GAGCATTAGATGGTGGATTGGACATTCCTCATAGTGACAAGAGGTTTGCT
GGTTTTTCAAAGGACGGCAAGCAGCTGGATGCTGAGGTTCACCGCAAGTA
TATCTACGGTGGACATGTTGCTGCTTACATGAGTACATTGATGGAAGATG
AGCCAGAGAAGTATCAAACTCACTTCACTGAGTACATCAAGAAAGGAATT
GATGCTGATGGCTTGGAGGCACTGTACAAGAAGGTTCATGCTGCCATTCG
TGCAGATCCTACAATGAAGAAATC
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