CK937854
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937854 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.322e-13 Identity = 60/192 (31.25%), Postives = 87/192 (45.31%), Query Frame = 1 Query: 103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAY 678 R+ V ++RRREGKTDY R +LI ++ R VVR TN+ II Q++ A + GD L A + EL YG + ++ AAY TG+L A V+A D+ PA A+LD+GL + T G +VF +PH ++ + + G H+AAY Sbjct: 6 RYFVPFRRRREGKTDYYKRGKLIVAEQP-------RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFA----------------VKALNADH---PA-------AILDIGLNRATYGAKVFAALKGAVEAGLDVPHGEEILPADER-------------VKGEHIAAY 151
BLAST of CK937854 vs. ExPASy Swiss-Prot
Match: RL18_UNCMA (50S ribosomal protein L18P OS=Uncultured methanogenic archaeon RC-I GN=rpl18p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.951e-13 Identity = 68/233 (29.18%), Postives = 102/233 (43.78%), Query Frame = 1 Query: 103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAI 798 R++V ++RRREGKTDY R++LI + K R VVR T+ +IAQI+ GD VLAAA + EL + +G + + +AAY TGLL+ + E VE A+LD+GL + G+RV+ +P S+ F + I G H+A + + +T+Y K G+ A L A + +V I Sbjct: 6 RYKVAFRRRREGKTDYHQRLKLI-------VSRKPRLVVRRTSSQVIAQILVTRPEGDKVLAAATSAELAKTFGYKGSGKNTSAAYLTGLLIGYKA---------QEAGVE-----------------EAILDMGLRENRAGSRVYAALKGAVDSGLEVPCSEDVFPSDDR-------------IRGEHIAGNTA-----------SKYTQYEKNGLKAADLPAHFDEVKGKI 181
BLAST of CK937854 vs. ExPASy Swiss-Prot
Match: RL18_METST (50S ribosomal protein L18P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.186e-12 Identity = 58/227 (25.55%), Postives = 94/227 (41.41%), Query Frame = 1 Query: 106 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKV 786 ++V++KRRREGKT+Y R +L++ DK R VVR T+ I Q+V GD L +A + L +G + +AAY TG L ++ L E Y +LD+G+ + G +++ IPH+D S+ I G H+A Y ++ +DE F YI+ G+ + + ++ V Sbjct: 7 YKVQFKRRREGKTNYNKRYKLVDLDKT-------RMVVRITSNHTITQLVKIGENGDETLVSATSKNLKEFGWLGNGKNTSAAYLTGYLFGKKAL----------------NEGYD----------ETILDIGVQPSIKGTKIYAVLKGALDAGLYIPHNDSILPEDSR-------------IRGEHIAQYAESMDDDEK---NAKFANYIRCGLSPEEIPDHFESV 184
BLAST of CK937854 vs. ExPASy Swiss-Prot
Match: RL18_HALLT (50S ribosomal protein L18P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.186e-12 Identity = 61/201 (30.35%), Postives = 83/201 (41.29%), Query Frame = 1 Query: 103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEP 705 R++V +RRRE +TDY R+RL+ K R V R +N + AQ+V+ GD AAA + EL YG + + +AY TG L R + G D A+LD+GL T GN+ F IPH+D A +S+ G H+AAY L DEP Sbjct: 6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNAHVRAQLVTPGSDGDETHAAASSEELGEYGWDAPTGNLPSAYLTGYLAGARAVD--------------AGLD------------EAVLDIGLNTATPGNKTFAVQEGAIDAGLEIPHNDDVLADWSR-------------TRGEHIAAYAEQL--DEP 158
BLAST of CK937854 vs. ExPASy Swiss-Prot
Match: RL18_HALWD (50S ribosomal protein L18P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.549e-12 Identity = 58/201 (28.86%), Postives = 84/201 (41.79%), Query Frame = 1 Query: 103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEP 705 R++V +RRRE +TDY R+RL+ K R V R +N+ + AQ+++ GD AA + L YG E + +AY TG L R ++ G D A+LD+GL T GN+VF IPH++ A +S++ G H+AAY DEP Sbjct: 6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNRHVRAQLITPGPDGDETHVAASSEHLSEYGWEAPTGNLPSAYLTGYLAGMRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFVVQEGAIDAGVSIPHNESVLADWSRN-------------RGEHIAAYAE--QRDEP 158
BLAST of CK937854 vs. ExPASy Swiss-Prot
Match: RL18_METTP (50S ribosomal protein L18P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.641e-12 Identity = 54/183 (29.51%), Postives = 81/183 (44.26%), Query Frame = 1 Query: 103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKY 651 R++V ++RRREG+T+Y R RLI K R VVR N +I Q++ A + GD L + EL YG + + AAY TGLL +++L + Y+ +LD+GL + G+RV+ +PHS + F D ++ EV R Y Sbjct: 6 RYRVPFRRRREGRTNYHVRYRLILSRKP-------RVVVRKGNANITIQLIIAELKGDRTLLTVSSKELRNYGFQHSTGNVPAAYLTGLLFGKKMLAL----------------GYN----------EGILDIGLHSNSRGSRVYAALKGVVDAGVDVPHSPEVF----PDDSRIRGEVIRDY 151
BLAST of CK937854 vs. ExPASy Swiss-Prot
Match: RL18_METBU (50S ribosomal protein L18P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.450e-12 Identity = 55/193 (28.50%), Postives = 86/193 (44.56%), Query Frame = 1 Query: 103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYM 681 R++V ++RRREG+TDY R+RL+ ++ R VVR + + + Q+V+ + GD L++A + EL +YG E + AAY TGLL + L + YE V LD+G+ ++ G+RV+ +PH+ F + I G HVA YM Sbjct: 6 RYKVAFRRRREGRTDYHQRLRLLLSRED-------RVVVRKSARHMQIQLVAPDANGDVTLSSAISKELAKYGYEGSTGNTTAAYLTGLLFGYKTLA-----EGYESGV---------------------LDIGIQASSAGSRVYAALKGVVDSGLDVPHNSSVFPSDER-------------IRGEHVAEYM 152
BLAST of CK937854 vs. ExPASy Swiss-Prot
Match: RL18_DESK1 (50S ribosomal protein L18P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.450e-12 Identity = 65/229 (28.38%), Postives = 103/229 (44.98%), Query Frame = 1 Query: 103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKV 786 R++V +RRREGKT+Y R R+I RF+VR T I Q+ +A GD ++AAA+++EL R+G + G + +AAY TGLL A R L+ G +Y+V D+GL + G VF +P G+ +E + I G H+A+Y L E+ + F+ Y+ G+ + L + +++V Sbjct: 6 RYKVPRRRRREGKTNYYKRYRMIVSGHP-------RFIVRKTLNYIWVQVATARPEGDVIIAAAHSNELRKRFGWKAGTCNTSAAYLTGLLAALRALE--------------KGVEYAVP------------DIGLHRPVKGALVFAAIKAANDAGLKVP----------MGGEVAPSE---ERIRGEHIASYAKILREN--GLLEKRFSRYLANGLQPEDLPSHFEEV 186
BLAST of CK937854 vs. ExPASy Swiss-Prot
Match: RL18_SULIN (50S ribosomal protein L18P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.506e-12 Identity = 58/234 (24.79%), Postives = 103/234 (44.02%), Query Frame = 1 Query: 106 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQTHFTEYIKKGIDADGLEALYKKVHAAIRA 804 +++K++RRREGKT+Y R + + + RF+VR TNK +I QI + GD ++A+A++ EL ++ + + +AY TG L A R +K +G E + D+GL + GN+VF IP D + I G H+A Y L + + Y F+ Y+ +G++ + L + ++++ I++ Sbjct: 7 YKIKHRRRREGKTNYYKRYVYVI-------SKQIRFIVRITNKYVIVQIAKIDPKGDIMVASAHSSELTKKFEWKGDENNTPSAYLTGYLAALRAVK--------KGVTE------------------CVADIGLHVPSKGNKVFYAIKGAIDAGLKIPIG--------------DISIENDRIKGEHIAKYAEKLKSENLDLYNKLFSRYLGRGLNPENLPSHFEEILNKIKS 193
BLAST of CK937854 vs. ExPASy Swiss-Prot
Match: RL18_METLZ (50S ribosomal protein L18P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.506e-12 Identity = 52/145 (35.86%), Postives = 71/145 (48.97%), Query Frame = 1 Query: 103 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTSYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVF 537 R+ V+++RRREG+TDY R RLI +N R VVR TN+ II Q+++A + GD L + EL +G + L + AAY TG+L A R K YEG + D+GL +TG RVF Sbjct: 6 RYFVQFRRRREGRTDYYQRQRLIVSGRN-------RMVVRKTNRHIIIQLIAAQMDGDYTLVHVNSRELVNFGYKGYLGNTPAAYLTGMLFAVRAQKA-----GYEGGI---------------------ADIGLQVASTGARVF 117 The following BLAST results are available for this feature:
BLAST of CK937854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 96
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937854 ID=CK937854; Name=CK937854; organism=Citrus sinensis; type=EST; length=824bpback to top |