CK937823

Overview
NameCK937823
Unique NameCK937823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length400
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: SFR2_ARATH (Beta-glucosidase-like SFR2, chloroplastic OS=Arabidopsis thaliana GN=SFR2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.587e-13
Identity = 38/121 (31.40%), Postives = 62/121 (51.24%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSG---GVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGT 354
            VK+ K+  +  FR  + WSR++P     G    VN + +  Y  ++ ++ SNG++  +T+FH  LP    D YGG+   + V  F D+  +      D V  W+T NEPH ++   Y  G+
Sbjct:  161 VKLAKDTGVTVFRMGVDWSRIMPVEPTKGIKEAVNYEAVEHYKWILKKVRSNGMKVMLTLFHHSLPPWAAD-YGGWKMEKTVDYFMDFTRIVVDSMYDLVDSWVTFNEPHIFTMLTYMCGS 280          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: LACG1_STRR6 (6-phospho-beta-galactosidase 1 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=lacG1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.535e-13
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAP 363
            + +  E  L A R SISW R+ P+  + G  N   + +Y+ +    L + + PFV++ H+D PQ + +  G +L+   +  F  YA  CF+EF + VKHW T+NE  S +   Y  G   P
Sbjct:   64 IALAAEHGLQALRLSISWVRIFPD--IDGDANVLAVHYYHRVFQSCLKHNVIPFVSLHHFDSPQKMLET-GDWLNRENIDRFIRYARFCFQEFTE-VKHWFTINELMSLAAGQYIGGQFPP 180          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: LACG1_STRPN (6-phospho-beta-galactosidase 1 OS=Streptococcus pneumoniae GN=lacG1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.535e-13
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNGKLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSNNGYNKGTDAP 363
            + +  E  L A R SISW R+ P+  + G  N   + +Y+ +    L + + PFV++ H+D PQ + +  G +L+   +  F  YA  CF+EF + VKHW T+NE  S +   Y  G   P
Sbjct:   64 IALAAEHGLQALRLSISWVRIFPD--IDGDANVLAVHYYHRVFQSCLKHNVIPFVSLHHFDSPQKMLET-GDWLNRENIDRFIRYARFCFQEFTE-VKHWFTINELMSLAAGQYIGGQFPP 180          
BLAST of CK937823 vs. ExPASy Swiss-Prot
Match: SFR2_ORYSJ (Beta-glucosidase-like SFR2, chloroplastic OS=Oryza sativa subsp. japonica GN=SFR2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.371e-11
Identity = 33/112 (29.46%), Postives = 54/112 (48.21%), Query Frame = 1
Query:    1 VKIMKEMNLDAFRFSISWSRLLPNG---KLSGGVNNKGISFYNNLINELLSNGLQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSY 327
            +K+ KE  +  FR  + W+RL+P     +L   VN   +  Y  +I  +   G++  +T+FH  LP      YGG+   + V  F D+  L      + V +W+  NEPH +
Sbjct:  197 LKLAKETGISVFRMGVDWARLMPEEPTEELKSSVNFAALERYRWIIQRVREYGMKVMLTLFHHSLPP-WAGKYGGWKMEKTVTYFMDFVRLVVDRVSNLVDYWVIFNEPHVF 307          
The following BLAST results are available for this feature:
BLAST of CK937823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
SFR2_ARATH1.587e-1331.40Beta-glucosidase-like SFR2, chloroplastic OS=Arabi... [more]
LACG1_STRR63.535e-1333.886-phospho-beta-galactosidase 1 OS=Streptococcus pn... [more]
LACG1_STRPN3.535e-1333.886-phospho-beta-galactosidase 1 OS=Streptococcus pn... [more]
SFR2_ORYSJ7.371e-1129.46Beta-glucosidase-like SFR2, chloroplastic OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004481_D06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937823 ID=CK937823; Name=CK937823; organism=Citrus sinensis; type=EST; length=400bp
GTGAAGATTATGAAGGAAATGAATTTGGATGCTTTCAGATTCTCCATCTC
CTGGTCTAGATTATTACCAAATGGAAAGCTAAGTGGTGGAGTGAACAACA
AAGGCATTAGTTTCTACAATAATCTCATCAACGAGCTCCTCTCAAATGGA
TTGCAACCCTTTGTTACTATCTTTCACTGGGATCTTCCACAGGCCCTGGA
AGATGACTATGGTGGCTTTTTAAGCCCTCGCATTGTGGCTGATTTTCAAG
ACTATGCGGAGCTTTGCTTCAAAGAATTTGGTGATCGCGTAAAGCATTGG
ATCACTTTAAATGAGCCACATTCATACAGTAATAATGGCTATAATAAGGG
TACCGATGCACCANNANNNNGTTCCAAATGGGTAAACAAAGCATGCCAGG
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