CK937805

Overview
NameCK937805
Unique NameCK937805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937805 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.127e-33
Identity = 68/146 (46.58%), Postives = 92/146 (63.01%), Query Frame = 1
Query:   52 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSWT 474
            A KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +S+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+   K +Y     E   +SWT
Sbjct:    5 ARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQSWT 150          
BLAST of CK937805 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.471e-33
Identity = 68/146 (46.58%), Postives = 93/146 (63.70%), Query Frame = 1
Query:   52 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSWT 474
            A KR++++ K LQ+DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY  +K +Y     E   +SWT
Sbjct:    5 ARKRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQSWT 150          
BLAST of CK937805 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.471e-33
Identity = 68/146 (46.58%), Postives = 92/146 (63.01%), Query Frame = 1
Query:   52 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSWT 474
            A KR++++ K LQ DPP   S  P   ++  W A I GP D+P+ GG F +S+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  +K +Y     E   +SWT
Sbjct:    5 ARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQSWT 150          
BLAST of CK937805 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.471e-33
Identity = 65/144 (45.14%), Postives = 96/144 (66.67%), Query Frame = 1
Query:   58 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 489
            KRI+KE++ L +DPP    A P  +++ +++ T+ GP  S Y GG F + +  P +YP  PP V F TK++HPN++  G ICL  LK+ WSPAL I  VLLSI +L+  PNPDDPL  ++A ++K ++ +  + AR WT+KYA+
Sbjct:    5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKYAV 148          
BLAST of CK937805 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.278e-33
Identity = 65/145 (44.83%), Postives = 92/145 (63.45%), Query Frame = 1
Query:   55 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 486
            S+RI KEL D+Q+D         + +D+ H +    GP  +PY GG F+V I  P DYPF+PPK+ F TK++HPN++S  G+ICLDILK+QWSP  T+   L+S+ SLL  P P +P   ++A +Y  +  ++  TAR WT  YA
Sbjct:    6 SRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYA 150          
BLAST of CK937805 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 4.281e-33
Identity = 62/143 (43.36%), Postives = 93/143 (65.03%), Query Frame = 1
Query:   52 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQK 480
            A +R++++ K LQ+DPPT  S  P   ++  W A I GP D+P+  G F ++I F  +YP KPP V F +KVFHPN+ ++G ICLDIL+ +WSP   +S +L SI SLL+DPNP+ P     A +YK ++ +YE   ++  ++
Sbjct:    5 ARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQ 147          
BLAST of CK937805 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.591e-33
Identity = 67/143 (46.85%), Postives = 94/143 (65.73%), Query Frame = 1
Query:   58 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 486
            KRI+KE + L  DP    +A P  +++ ++Q TI GP  SPY  G+F + ++ P DYP + PKV F TK++HPNI+  G ICLD+LK  WSPAL I  VLLSI +LL  PNP+DPL  ++A  +  ++   ++ AR WT+ YA
Sbjct:    6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 148          
BLAST of CK937805 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.799e-31
Identity = 60/145 (41.38%), Postives = 92/145 (63.45%), Query Frame = 1
Query:   52 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSW 471
            A +R++++ K +Q DPP   SA PVA+++  W A I+GP D+P+  G F + +HF   YP KPP V F +++FHPN+   G +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E +++YK ++ +Y     E+  +SW
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRETVEKSW 149          
BLAST of CK937805 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.349e-31
Identity = 60/145 (41.38%), Postives = 93/145 (64.14%), Query Frame = 1
Query:   52 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSW 471
            A +R++++ K +Q DPP   SA P+ +++  W A I+GP D+P+  G F + + F   YP KPP+V F +++FHPN+ +NG +CLDIL+ +WSP   ++ VL SI SLL DPN   P   E +++YK ++ +Y     E+  RSW
Sbjct:    5 ARRRLMRDFKRMQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSW 149          
BLAST of CK937805 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.068e-31
Identity = 59/134 (44.03%), Postives = 87/134 (64.93%), Query Frame = 1
Query:   52 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYE 453
            A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
The following BLAST results are available for this feature:
BLAST of CK937805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC2_ARATH1.127e-3346.58Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC2_WHEAT1.471e-3346.58Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC2_MEDSA1.471e-3346.58Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC13_SCHPO1.471e-3345.14Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC1_SCHPO3.278e-3344.83Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBCD6_DROME4.281e-3343.36Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC13_YEAST5.591e-3346.85Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBC2_ASPFU1.799e-3141.38Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC2_TRIHA2.349e-3141.38Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBE2B_RAT3.068e-3144.03Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004481_G03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937805 ID=CK937805; Name=CK937805; organism=Citrus sinensis; type=EST; length=786bp
GGGGGTCCCGTCGGTCAAAGACGATCTTCGAGAAAACGTAGTTTGTTCAT
GGCTTCGAAGAGAATCTTGAAGGAGCTCAAGGATCTTCAGAAAGATCCTC
CCACCTCTTGCAGTGCTGGTCCTGTGGCTGAAGACATGTTTCATTGGCAA
GCAACCATAATGGGCCCCCCAGATAGTCCTTATGCAGGAGGTGTATTTCT
AGTTTCAATCCATTTCCCTCCTGATTATCCATTCAAACCACCTAAGGTCG
CGTTTAGGACCAAGGTTTTTCACCCAAATATTAACAGCAATGGCAGTATA
TGTCTCGACATACTAAAAGAGCAGTGGAGTCCTGCCCTCACTATATCTAA
GGTATTGCTCTCAATTTGTTCATTGTTGACGGACCCAAACCCAGATGACC
CTTTGGTGCCAGAAATAGCTCACATGTACAAGACAGACAAGGCTAAGTAT
GAATCAACTGCTAGGAGCTGGACCCAAAAGTATGCCATGGGCTAAGTATG
AAATCATCTAGGACATAGTCTTTCATCACATAATATTTATGTATAAAATG
AAGTGTGATATGCTCGTCTTCCGTCTTTGTTTTTGCCTTTTGGAAATGAT
AATTGAAGATGGTGTTCATGCACTGTCTTCCATCAAAACAAGATTGATGT
TGTATTGTAGCTTGCTTGTGTTGACATTGATCTTGTAAGATCAGTGGTTT
ATGACTTAATGTTCTTGGGTGCACGCATTTGTTTACCATGTATCTCAAAC
AGTTCTGTTTAAATTACTGTTTGCTTTAAANAAAAA
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